Wall clock time and date at job start Sat Apr 11 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 119.99851 * 2 1 4 4 H 1.48498 * 109.47413 * 270.00223 * 3 2 1 5 5 H 1.48503 * 109.46957 * 30.00231 * 3 2 1 6 6 H 1.48503 * 109.47119 * 149.99961 * 3 2 1 7 7 C 1.38792 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00304 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00223 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00295 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47110 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99774 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99683 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99637 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46850 * 184.85891 * 14 13 11 16 16 H 1.08991 * 110.46265 * 52.21920 * 15 14 13 17 17 C 1.54382 * 110.40945 * 289.79965 * 15 14 13 18 18 C 1.54263 * 105.06230 * 217.36967 * 17 15 14 19 19 C 1.54378 * 105.05802 * 0.02562 * 18 17 15 20 20 N 1.48561 * 104.59646 * 23.85289 * 19 18 17 21 21 C 1.46900 * 110.99987 * 200.95813 * 20 19 18 22 22 C 1.52998 * 109.47532 * 279.97504 * 21 20 19 23 23 C 1.52999 * 109.47501 * 180.02562 * 22 21 20 24 24 F 1.39889 * 109.47359 * 59.99802 * 23 22 21 25 25 F 1.39899 * 109.47220 * 180.02562 * 23 22 21 26 26 F 1.39900 * 109.46764 * 299.99884 * 23 22 21 27 27 H 0.96998 * 119.99669 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47122 * 59.99969 * 10 9 7 29 29 H 1.08997 * 109.47201 * 299.99787 * 10 9 7 30 30 H 0.97001 * 120.00077 * 0.02562 * 13 11 10 31 31 H 1.08996 * 109.47564 * 64.85960 * 14 13 11 32 32 H 1.08997 * 109.47324 * 304.85621 * 14 13 11 33 33 H 1.08992 * 110.32355 * 336.27108 * 17 15 14 34 34 H 1.09006 * 110.31869 * 98.37244 * 17 15 14 35 35 H 1.08991 * 110.32010 * 118.89731 * 18 17 15 36 36 H 1.09002 * 110.32225 * 241.00808 * 18 17 15 37 37 H 1.09008 * 110.41387 * 265.07464 * 19 18 17 38 38 H 1.09005 * 110.41304 * 142.62922 * 19 18 17 39 39 H 1.08998 * 109.47512 * 39.97538 * 21 20 19 40 40 H 1.09006 * 109.47353 * 159.97235 * 21 20 19 41 41 H 1.09007 * 109.46713 * 300.00292 * 22 21 20 42 42 H 1.09006 * 109.47020 * 59.99528 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0014 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9845 -0.0025 11 6 5.5732 -3.2324 -0.0026 12 8 6.3441 -2.2961 -0.0014 13 7 6.0458 -4.4946 -0.0030 14 6 7.4908 -4.7356 -0.0026 15 6 7.7574 -6.2372 -0.1254 16 1 7.2194 -6.6512 -0.9780 17 6 7.3492 -6.9645 1.1738 18 6 8.4129 -8.0645 1.3687 19 6 9.3748 -7.9090 0.1712 20 7 9.2149 -6.4952 -0.2562 21 6 9.6592 -6.3114 -1.6443 22 6 11.1849 -6.2031 -1.6814 23 6 11.6476 -6.0110 -3.1271 24 9 11.0843 -4.8402 -3.6454 25 9 13.0427 -5.9125 -3.1610 26 9 11.2390 -7.1055 -3.8967 27 1 -0.4849 0.8401 0.0004 28 1 3.6434 -3.4309 -0.8926 29 1 3.6442 -3.4321 0.8873 30 1 5.4292 -5.2434 -0.0036 31 1 7.9207 -4.3652 0.9280 32 1 7.9462 -4.2157 -0.8454 33 1 7.3621 -6.2720 2.0153 34 1 6.3594 -7.4079 1.0643 35 1 8.9479 -7.9119 2.3059 36 1 7.9458 -9.0493 1.3560 37 1 9.0900 -8.5845 -0.6355 38 1 10.4024 -8.0982 0.4819 39 1 9.3409 -7.1643 -2.2437 40 1 9.2202 -5.3992 -2.0486 41 1 11.5032 -5.3500 -1.0820 42 1 11.6238 -7.1152 -1.2771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753097736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:11 Heat of formation + Delta-G solvation = -197.343218 kcal Electronic energy + Delta-G solvation = -26940.967261 eV Core-core repulsion = 22438.677500 eV Total energy + Delta-G solvation = -4502.289761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.47566 -47.98427 -47.94094 -40.08210 -38.92790 -35.04267 -34.19736 -32.44175 -31.02201 -30.56512 -28.81387 -25.82206 -25.61352 -24.80130 -22.77807 -21.38773 -20.76592 -20.37424 -18.92088 -18.78942 -17.99171 -17.67495 -16.67428 -16.49068 -16.10044 -15.50681 -15.29784 -15.23675 -14.96044 -14.86319 -14.59517 -14.37628 -14.25425 -14.10451 -14.08499 -13.95880 -13.72094 -13.34363 -13.05008 -12.91120 -12.81640 -12.78402 -12.24700 -11.98027 -11.85828 -11.71668 -11.49390 -11.27158 -11.21516 -11.00687 -10.92767 -10.60887 -9.86087 -9.55518 -9.13335 -9.03133 -8.97535 -8.50357 -6.92167 -6.29280 -4.01054 2.30698 2.71240 2.96707 3.06890 3.32920 3.37394 3.50828 3.53577 3.62380 3.64967 3.87299 4.09275 4.17208 4.33151 4.39683 4.46656 4.58866 4.69493 4.73988 4.82850 4.84050 4.98602 5.09193 5.09857 5.18576 5.27505 5.28419 5.34100 5.48131 5.60417 5.66694 5.74115 5.78369 5.79043 5.99931 6.26723 6.34709 6.53857 7.57310 7.93788 8.41026 8.47532 9.16987 10.79912 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.002188 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.964697 B =12796.595698 C =14128.942329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.517 6.517 13 N -0.737 5.737 14 C 0.136 3.864 15 C 0.053 3.947 16 H 0.063 0.937 17 C -0.123 4.123 18 C -0.124 4.124 19 C 0.030 3.970 20 N -0.500 5.500 21 C 0.037 3.963 22 C -0.159 4.159 23 C 0.453 3.547 24 F -0.180 7.180 25 F -0.184 7.184 26 F -0.186 7.186 27 H 0.271 0.729 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.398 0.602 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.712 -21.215 -1.312 31.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.317 3.683 12 O -0.391 6.391 13 N -0.392 5.392 14 C 0.011 3.989 15 C -0.056 4.056 16 H 0.081 0.919 17 C -0.161 4.161 18 C -0.162 4.162 19 C -0.098 4.098 20 N -0.224 5.224 21 C -0.092 4.092 22 C -0.198 4.198 23 C 0.398 3.602 24 F -0.162 7.162 25 F -0.166 7.166 26 F -0.168 7.168 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.232 0.768 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.139 0.861 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 24.174 -19.165 -1.023 30.866 hybrid contribution -1.429 -1.250 -0.891 2.097 sum 22.745 -20.415 -1.914 30.623 Atomic orbital electron populations 1.69941 1.05916 1.27770 1.48087 1.24717 0.94461 0.98990 0.93179 0.86732 0.81904 0.83252 0.79949 1.19206 1.19950 1.15889 1.22314 0.88280 0.97525 1.58769 0.89394 1.84809 1.09254 1.00029 1.97421 1.23275 0.93956 1.04420 1.05790 1.20262 0.90586 0.82173 0.75275 1.90711 1.58770 1.42142 1.47520 1.45878 1.07263 1.08118 1.77916 1.21114 0.81332 0.93318 1.03137 1.22850 0.88430 0.95850 0.98432 0.91879 1.22412 0.98766 0.97692 0.97201 1.22282 0.96488 0.98851 0.98554 1.23228 1.00849 0.88312 0.97378 1.65095 1.15520 1.21823 1.19938 1.22256 0.93059 1.03277 0.90574 1.22778 0.98856 1.07940 0.90192 1.20570 0.75155 0.73883 0.90582 1.93219 1.84826 1.49162 1.88979 1.93197 1.30348 1.95941 1.97094 1.93185 1.90232 1.54752 1.78602 0.91942 0.88535 0.88441 0.76802 0.90738 0.91340 0.90144 0.90804 0.90692 0.91089 0.93322 0.89722 0.92703 0.89038 0.86149 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.51 13.97 55.49 0.78 -25.73 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.77 27.74 -169.99 -4.71 17.06 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.23 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.34 6.16 36.01 0.22 -2.12 16 11 C 0.53 9.18 7.85 -10.98 -0.09 9.09 16 12 O -0.52 -11.05 15.86 5.56 0.09 -10.97 16 13 N -0.74 -8.78 5.45 -60.29 -0.33 -9.11 16 14 C 0.14 1.44 5.26 -4.04 -0.02 1.42 16 15 C 0.05 0.39 2.29 -66.05 -0.15 0.24 16 16 H 0.06 0.45 8.00 -51.93 -0.42 0.03 16 17 C -0.12 -0.78 6.34 -25.35 -0.16 -0.94 16 18 C -0.12 -0.65 7.00 -25.35 -0.18 -0.82 16 19 C 0.03 0.16 6.11 -2.18 -0.01 0.15 16 20 N -0.50 -3.44 4.99 -222.11 -1.11 -4.55 16 21 C 0.04 0.24 4.57 -3.82 -0.02 0.23 16 22 C -0.16 -0.88 5.43 -26.73 -0.15 -1.03 16 23 C 0.45 3.39 3.16 37.16 0.12 3.51 16 24 F -0.18 -1.69 16.80 2.25 0.04 -1.66 16 25 F -0.18 -1.53 17.32 2.25 0.04 -1.49 16 26 F -0.19 -1.53 16.80 2.25 0.04 -1.49 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 29 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.40 3.58 8.38 -40.82 -0.34 3.23 16 31 H 0.07 0.88 7.96 -51.93 -0.41 0.47 16 32 H 0.07 0.82 7.17 -51.93 -0.37 0.45 16 33 H 0.08 0.60 7.73 -51.93 -0.40 0.20 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.24 7.68 -51.92 -0.40 -0.16 16 38 H 0.08 0.38 8.01 -51.93 -0.42 -0.04 16 39 H 0.05 0.34 7.30 -51.93 -0.38 -0.04 16 40 H 0.09 0.71 6.68 -51.93 -0.35 0.36 16 41 H 0.12 0.65 8.14 -51.92 -0.42 0.22 16 42 H 0.11 0.43 7.77 -51.93 -0.40 0.03 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -33.95 370.01 -7.81 -41.76 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.00 Total: -1.62 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.22 Total: -2.22 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: -0.66 Total: -39.39 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.11 Total: -4.63 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.95 -7.81 -41.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753097736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.581 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds