Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48504 * 109.46846 * 269.99748 * 3 2 1 5 5 H 1.48495 * 109.47448 * 29.99811 * 3 2 1 6 6 H 1.48497 * 109.47015 * 150.00185 * 3 2 1 7 7 C 1.38797 * 119.99623 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99937 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00321 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00050 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46992 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00226 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99910 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00037 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47164 * 185.20999 * 14 13 11 16 16 H 1.09001 * 110.01037 * 304.04253 * 15 14 13 17 17 C 1.54310 * 109.89331 * 65.15706 * 15 14 13 18 18 C 1.55143 * 103.02184 * 141.68676 * 17 15 14 19 19 C 1.54900 * 101.65355 * 324.35338 * 18 17 15 20 20 N 1.47445 * 109.89009 * 182.93015 * 15 14 13 21 21 C 1.46902 * 110.99820 * 3.84865 * 20 15 14 22 22 C 1.53004 * 109.46903 * 174.51849 * 21 20 15 23 23 C 1.53006 * 109.46985 * 180.02562 * 22 21 20 24 24 F 1.39897 * 109.47203 * 59.99769 * 23 22 21 25 25 F 1.39903 * 109.47073 * 180.02562 * 23 22 21 26 26 F 1.39899 * 109.47096 * 300.00001 * 23 22 21 27 27 H 0.97004 * 120.00251 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47263 * 59.99645 * 10 9 7 29 29 H 1.09006 * 109.46977 * 299.99966 * 10 9 7 30 30 H 0.97001 * 120.00050 * 359.97438 * 13 11 10 31 31 H 1.09000 * 109.47412 * 65.20543 * 14 13 11 32 32 H 1.09003 * 109.47017 * 305.20608 * 14 13 11 33 33 H 1.08994 * 110.71238 * 260.07775 * 17 15 14 34 34 H 1.09007 * 110.70617 * 23.13572 * 17 15 14 35 35 H 1.08997 * 110.99094 * 206.25475 * 18 17 15 36 36 H 1.09006 * 110.98585 * 82.44261 * 18 17 15 37 37 H 1.09006 * 110.37146 * 278.23855 * 19 18 17 38 38 H 1.08997 * 110.37436 * 155.89994 * 19 18 17 39 39 H 1.09000 * 109.47475 * 294.51773 * 21 20 15 40 40 H 1.09005 * 109.47332 * 54.51851 * 21 20 15 41 41 H 1.08996 * 109.47165 * 299.99295 * 22 21 20 42 42 H 1.08994 * 109.47425 * 60.00564 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9872 -5.3028 0.0017 12 8 0.7909 -5.5023 0.0009 13 7 2.8439 -6.3432 0.0033 14 6 2.3302 -7.7151 0.0034 15 6 3.4965 -8.6964 0.1363 16 1 4.2217 -8.5236 -0.6589 17 6 4.1743 -8.5233 1.5117 18 6 4.5214 -9.9802 1.9163 19 6 3.3131 -10.7608 1.3415 20 7 2.9967 -10.0818 0.0669 21 6 1.5522 -10.1077 -0.1989 22 6 1.0963 -11.5544 -0.3993 23 6 -0.4081 -11.5813 -0.6768 24 9 -0.6825 -10.8416 -1.8320 25 9 -0.8251 -12.9042 -0.8594 26 9 -1.0925 -11.0228 0.4081 27 1 -0.4851 0.8401 0.0004 28 1 3.1237 -3.7310 0.8925 29 1 3.1250 -3.7318 -0.8875 30 1 3.8007 -6.1836 0.0043 31 1 1.8002 -7.9048 -0.9300 32 1 1.6469 -7.8471 0.8424 33 1 5.0791 -7.9221 1.4226 34 1 3.4848 -8.0756 2.2275 35 1 4.5727 -10.0828 3.0002 36 1 5.4524 -10.3035 1.4505 37 1 2.4646 -10.7025 2.0233 38 1 3.5846 -11.8008 1.1604 39 1 1.0193 -9.6727 0.6466 40 1 1.3379 -9.5312 -1.0989 41 1 1.6291 -11.9894 -1.2449 42 1 1.3104 -12.1308 0.5006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753097737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -191.055466 kcal Electronic energy + Delta-G solvation = -27296.674481 eV Core-core repulsion = 22794.657377 eV Total energy + Delta-G solvation = -4502.017104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.36740 -47.88251 -47.82570 -40.36616 -38.82670 -34.80041 -34.21576 -32.43907 -31.13170 -30.30518 -28.71945 -25.58945 -25.56368 -24.94259 -22.97897 -21.51350 -20.41693 -20.06949 -18.81002 -18.63963 -17.87402 -17.78085 -16.62677 -16.43531 -16.06477 -15.47307 -15.34932 -15.25930 -14.81385 -14.75110 -14.54608 -14.26782 -14.15968 -14.02364 -13.98213 -13.97780 -13.50830 -13.37774 -13.17639 -12.83531 -12.55720 -12.45585 -12.20791 -11.93049 -11.71871 -11.60900 -11.51910 -11.14986 -11.09109 -11.06988 -11.03501 -10.77469 -9.83302 -9.48515 -9.08357 -8.97171 -8.80697 -8.24970 -6.51397 -6.22635 -3.93447 2.40658 2.94716 3.05744 3.21540 3.22129 3.28411 3.33788 3.60830 3.65111 3.73123 3.88088 4.15279 4.19385 4.22359 4.36422 4.52220 4.59181 4.73810 4.89053 4.98102 4.98832 5.12501 5.12911 5.18424 5.21785 5.34712 5.42561 5.45922 5.54433 5.58592 5.66091 5.73602 5.86567 5.91598 6.11360 6.36259 6.45324 6.58385 7.58367 7.64181 8.34103 8.56680 9.22608 10.84791 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.002267 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.671734 B =12345.735973 C =13750.073101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.736 5.736 14 C 0.103 3.897 15 C 0.064 3.936 16 H 0.098 0.902 17 C -0.141 4.141 18 C -0.128 4.128 19 C 0.033 3.967 20 N -0.513 5.513 21 C 0.034 3.966 22 C -0.162 4.162 23 C 0.453 3.547 24 F -0.180 7.180 25 F -0.186 7.186 26 F -0.183 7.183 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.346 -26.709 1.639 28.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.391 5.391 14 C -0.022 4.022 15 C -0.045 4.045 16 H 0.116 0.884 17 C -0.179 4.179 18 C -0.166 4.166 19 C -0.094 4.094 20 N -0.237 5.237 21 C -0.094 4.094 22 C -0.201 4.201 23 C 0.398 3.602 24 F -0.162 7.162 25 F -0.167 7.167 26 F -0.164 7.164 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.137 0.863 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.361 -27.207 1.219 28.211 hybrid contribution 1.710 1.712 0.588 2.490 sum 9.070 -25.495 1.808 27.121 Atomic orbital electron populations 1.70019 1.05957 1.27477 1.46815 1.24999 0.95034 0.99051 0.94537 0.86161 0.79388 0.81549 0.78360 1.20254 1.20750 1.19706 1.22861 0.94893 0.91632 1.58992 0.90923 1.85424 1.04878 0.96341 1.96719 1.23524 1.06603 0.95276 1.04940 1.20335 0.86509 0.86286 0.75109 1.90711 1.15373 1.85575 1.47330 1.45903 1.09979 1.05117 1.78125 1.21976 0.96122 0.81528 1.02593 1.22675 0.96368 0.86734 0.98681 0.88442 1.22918 1.01352 0.97417 0.96211 1.22681 0.98356 0.94581 1.00979 1.23208 0.97634 0.99131 0.89442 1.63764 1.12928 1.13804 1.33226 1.22419 0.89322 0.94209 1.03493 1.22845 0.88570 1.01375 1.07313 1.20533 0.91890 0.73395 0.74368 1.93216 1.95178 1.77196 1.50584 1.93190 1.92154 1.36164 1.95221 1.93211 1.82662 1.85385 1.55150 0.92165 0.89223 0.89169 0.76776 0.91001 0.91301 0.90188 0.90685 0.90546 0.90418 0.93043 0.89765 0.92373 0.88355 0.86349 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 11 C 0.53 9.70 7.85 -10.98 -0.09 9.62 16 12 O -0.52 -11.65 15.86 5.56 0.09 -11.56 16 13 N -0.74 -9.26 5.33 -60.30 -0.32 -9.58 16 14 C 0.10 1.13 3.75 -4.05 -0.02 1.12 16 15 C 0.06 0.50 3.50 -66.73 -0.23 0.27 16 16 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 17 C -0.14 -0.97 6.12 -24.91 -0.15 -1.12 16 18 C -0.13 -0.72 7.08 -24.59 -0.17 -0.90 16 19 C 0.03 0.20 5.56 -2.30 -0.01 0.19 16 20 N -0.51 -3.77 5.20 -223.35 -1.16 -4.93 16 21 C 0.03 0.27 3.43 -3.82 -0.01 0.25 16 22 C -0.16 -1.01 5.24 -26.73 -0.14 -1.15 16 23 C 0.45 3.94 3.16 37.16 0.12 4.05 16 24 F -0.18 -1.88 16.80 2.25 0.04 -1.84 16 25 F -0.19 -1.68 17.32 2.25 0.04 -1.64 16 26 F -0.18 -1.89 16.80 2.25 0.04 -1.85 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 29 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 30 H 0.40 3.79 8.35 -40.82 -0.34 3.45 16 31 H 0.07 0.86 6.25 -51.93 -0.32 0.54 16 32 H 0.07 0.86 6.97 -51.93 -0.36 0.50 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.62 7.80 -51.93 -0.40 0.22 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.32 7.70 -51.93 -0.40 -0.08 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.52 6.44 -51.93 -0.33 0.18 16 40 H 0.10 0.87 5.94 -51.93 -0.31 0.57 16 41 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.11 0.51 7.34 -51.93 -0.38 0.13 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -34.42 366.84 -8.33 -42.74 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.78 Total: -0.52 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -0.29 Total: -3.39 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: -0.75 Total: -39.94 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.11 Total: -5.33 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.42 -8.33 -42.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753097737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.313 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds