Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48505 * 109.46823 * 89.99600 * 3 2 1 5 5 H 1.48499 * 109.47133 * 209.99778 * 3 2 1 6 6 H 1.48498 * 109.46927 * 329.99689 * 3 2 1 7 7 C 1.37877 * 120.00437 * 180.27387 * 2 1 3 8 8 H 1.08004 * 119.99614 * 359.72492 * 7 2 1 9 9 C 1.50698 * 120.00146 * 179.72881 * 7 2 1 10 10 N 1.46503 * 109.46742 * 179.97438 * 9 7 2 11 11 C 1.34986 * 125.97147 * 124.71963 * 10 9 7 12 12 C 1.35215 * 107.87860 * 179.89408 * 11 10 9 13 13 C 1.40463 * 107.86459 * 0.35842 * 12 11 10 14 14 N 1.39929 * 125.97975 * 179.73548 * 13 12 11 15 15 C 1.34774 * 119.99954 * 0.02562 * 14 13 12 16 16 O 1.21388 * 120.00110 * 0.02562 * 15 14 13 17 17 C 1.49257 * 119.99840 * 179.97438 * 15 14 13 18 18 O 1.21382 * 120.00174 * 354.93824 * 17 15 14 19 19 N 1.34778 * 119.99940 * 174.93315 * 17 15 14 20 20 C 1.46535 * 124.95728 * 5.09865 * 19 17 15 21 21 C 1.53750 * 105.18952 * 179.97438 * 20 19 17 22 22 C 1.51217 * 104.54859 * 0.02562 * 21 20 19 23 23 C 1.38164 * 130.98950 * 180.02562 * 22 21 20 24 24 C 1.38248 * 120.14675 * 179.15077 * 23 22 21 25 25 C 1.38306 * 119.83634 * 0.78654 * 24 23 22 26 26 C 1.37816 * 120.23398 * 359.50250 * 25 24 23 27 27 C 1.38618 * 108.53804 * 359.75431 * 22 21 20 28 28 N 1.31273 * 108.04022 * 359.77959 * 13 12 11 29 29 H 0.96994 * 120.00054 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47360 * 299.99714 * 9 7 2 31 31 H 1.09003 * 109.47427 * 60.00293 * 9 7 2 32 32 H 1.07999 * 126.06329 * 0.03118 * 11 10 9 33 33 H 1.07992 * 126.06936 * 180.11953 * 12 11 10 34 34 H 0.97002 * 120.00195 * 180.02562 * 14 13 12 35 35 H 1.08997 * 110.29968 * 298.90239 * 20 19 17 36 36 H 1.09001 * 110.30204 * 60.94937 * 20 19 17 37 37 H 1.09000 * 110.42256 * 118.76760 * 21 20 19 38 38 H 1.08999 * 110.41939 * 241.23185 * 21 20 19 39 39 H 1.08003 * 119.92605 * 359.97438 * 23 22 21 40 40 H 1.08005 * 120.07942 * 180.30930 * 24 23 22 41 41 H 1.08009 * 119.88064 * 179.52348 * 25 24 23 42 42 H 1.08006 * 119.86242 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0046 -1.1940 -0.0057 8 1 1.4646 -2.1293 -0.0057 9 6 3.5116 -1.1939 -0.0119 10 7 3.9999 -2.5751 -0.0166 11 6 4.8471 -3.1135 -0.9191 12 6 5.0533 -4.4050 -0.5760 13 6 4.2966 -4.6706 0.5772 14 7 4.2278 -5.8948 1.2515 15 6 4.9303 -6.9529 0.8006 16 8 5.6232 -6.8438 -0.1902 17 6 4.8572 -8.2585 1.5201 18 8 4.2396 -8.3439 2.5615 19 7 5.4770 -9.3428 1.0134 20 6 6.3366 -9.3405 -0.1734 21 6 6.7975 -10.7978 -0.3398 22 6 6.1402 -11.5371 0.8040 23 6 6.1873 -12.8689 1.1683 24 6 5.5014 -13.3078 2.2855 25 6 4.7538 -12.4131 3.0294 26 6 4.6988 -11.0847 2.6667 27 6 5.3979 -10.6312 1.5455 28 7 3.6646 -3.5695 0.9113 29 1 -0.4850 0.8400 -0.0004 30 1 3.8713 -0.6780 -0.9021 31 1 3.8786 -0.6822 0.8779 32 1 5.2847 -2.6026 -1.7640 33 1 5.6844 -5.1087 -1.0982 34 1 3.6744 -5.9819 2.0434 35 1 5.7718 -9.0202 -1.0488 36 1 7.1946 -8.6865 -0.0176 37 1 6.4579 -11.1973 -1.2954 38 1 7.8827 -10.8646 -0.2627 39 1 6.7721 -13.5663 0.5868 40 1 5.5430 -14.3483 2.5722 41 1 4.2113 -12.7567 3.8980 42 1 4.1134 -10.3911 3.2522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192702912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = 69.083300 kcal Electronic energy + Delta-G solvation = -27773.751730 eV Core-core repulsion = 23721.720630 eV Total energy + Delta-G solvation = -4052.031100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.80574 -40.84482 -39.74073 -38.41526 -36.88011 -35.06437 -33.36518 -32.73546 -31.39676 -30.45338 -29.57803 -29.37449 -27.55732 -25.84174 -23.54122 -23.42560 -22.40880 -21.76248 -21.13407 -20.14586 -19.63550 -17.98693 -17.48196 -17.09250 -16.91302 -16.62991 -16.16862 -16.01484 -15.52373 -15.45098 -14.90026 -14.61468 -14.46751 -14.16485 -13.97628 -13.63119 -13.29420 -13.14344 -12.98603 -12.71262 -12.63844 -12.49607 -12.35011 -12.26277 -12.04938 -11.61046 -11.29333 -11.13623 -10.92117 -10.66520 -10.58305 -10.21414 -10.06504 -9.69303 -9.59580 -9.13877 -8.80632 -8.37154 -8.19923 -7.71858 -6.27018 -4.30191 0.60593 1.03686 1.37247 1.74707 2.49925 2.80270 2.86033 3.13417 3.17904 3.21507 3.44635 3.48744 3.54080 4.06010 4.13647 4.19234 4.23177 4.65275 4.73207 4.74596 4.87520 4.99934 5.06643 5.20418 5.26007 5.36466 5.42849 5.52621 5.55046 5.65433 5.77050 5.93435 6.05591 6.06516 6.18739 6.22528 6.27349 6.35497 6.54865 6.64323 6.74704 7.04586 7.10645 7.22330 7.42737 7.68201 7.78001 8.26698 8.39736 8.81978 9.27114 10.85526 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029968 B = 0.002018 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.114447 B =13874.699657 C =14524.194948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.314 5.314 11 C 0.055 3.945 12 C -0.281 4.281 13 C 0.253 3.747 14 N -0.596 5.596 15 C 0.519 3.481 16 O -0.492 6.492 17 C 0.523 3.477 18 O -0.493 6.493 19 N -0.528 5.528 20 C 0.106 3.894 21 C -0.090 4.090 22 C -0.130 4.130 23 C -0.082 4.082 24 C -0.138 4.138 25 C -0.096 4.096 26 C -0.127 4.127 27 C 0.140 3.860 28 N -0.285 5.285 29 H 0.269 0.731 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.172 0.828 33 H 0.163 0.837 34 H 0.425 0.575 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.734 -24.138 0.142 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.095 5.095 11 C -0.095 4.095 12 C -0.312 4.312 13 C 0.000 4.000 14 N -0.244 5.244 15 C 0.298 3.702 16 O -0.365 6.365 17 C 0.307 3.693 18 O -0.366 6.366 19 N -0.252 5.252 20 C -0.015 4.015 21 C -0.128 4.128 22 C -0.132 4.132 23 C -0.100 4.100 24 C -0.157 4.157 25 C -0.114 4.114 26 C -0.148 4.148 27 C 0.046 3.954 28 N -0.116 5.116 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.189 0.811 33 H 0.181 0.819 34 H 0.262 0.738 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.839 -23.122 0.819 27.486 hybrid contribution 0.445 0.649 -0.158 0.803 sum 15.284 -22.473 0.661 27.186 Atomic orbital electron populations 1.69868 1.06160 1.27372 1.48860 1.24838 0.94887 0.98827 0.94197 0.86886 0.80193 0.83789 0.79037 1.19667 1.18962 1.20548 1.21090 0.87667 0.95776 1.53001 0.89602 1.20118 0.97595 0.72687 0.98404 1.48722 1.32411 1.10246 1.18161 1.22581 0.95822 0.94553 0.96516 1.21524 1.11465 0.96988 1.01271 1.18980 0.99846 0.86195 0.94964 1.41925 1.45712 1.06723 1.30023 1.19494 0.81364 0.84249 0.85055 1.90705 1.38377 1.83108 1.24312 1.19879 0.79853 0.84381 0.85169 1.90773 1.39870 1.84294 1.21682 1.45471 1.45734 1.05582 1.28392 1.22399 0.94667 0.97346 0.87064 1.21237 1.01354 0.92631 0.97541 1.20068 1.01097 0.93689 0.98388 1.20383 0.99365 0.93334 0.96946 1.21082 0.98849 0.99883 0.95858 1.20962 0.98472 0.92338 0.99648 1.21025 1.00801 0.96703 0.96225 1.18362 0.98231 0.83378 0.95478 1.77482 1.22951 0.95388 1.15805 0.92106 0.92689 0.94270 0.81071 0.81924 0.73778 0.88443 0.88695 0.88800 0.88831 0.85565 0.85525 0.85300 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 19.85 27.47 -169.99 -4.67 15.18 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.93 9.79 -34.44 -0.34 -15.26 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 C 0.23 5.31 5.33 -5.19 -0.03 5.29 16 10 N -0.31 -6.84 3.67 -62.56 -0.23 -7.07 16 11 C 0.05 0.99 11.43 -17.24 -0.20 0.79 16 12 C -0.28 -5.04 9.60 -39.82 -0.38 -5.42 16 13 C 0.25 4.88 8.10 -154.55 -1.25 3.62 16 14 N -0.60 -9.52 5.43 -11.61 -0.06 -9.58 16 15 C 0.52 7.45 7.81 -11.68 -0.09 7.36 16 16 O -0.49 -7.20 11.19 5.46 0.06 -7.14 16 17 C 0.52 6.98 7.84 -11.68 -0.09 6.88 16 18 O -0.49 -7.26 14.66 5.47 0.08 -7.18 16 19 N -0.53 -6.07 3.12 -113.46 -0.35 -6.42 16 20 C 0.11 0.93 5.67 -3.63 -0.02 0.91 16 21 C -0.09 -0.59 6.94 -27.24 -0.19 -0.78 16 22 C -0.13 -1.13 6.23 -104.26 -0.65 -1.78 16 23 C -0.08 -0.59 10.04 -39.61 -0.40 -0.99 16 24 C -0.14 -0.99 10.06 -39.55 -0.40 -1.38 16 25 C -0.10 -0.80 10.02 -39.71 -0.40 -1.20 16 26 C -0.13 -1.38 9.46 -39.19 -0.37 -1.75 16 27 C 0.14 1.55 6.62 -83.63 -0.55 1.00 16 28 N -0.29 -6.40 12.42 31.41 0.39 -6.01 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.06 1.15 7.12 -51.93 -0.37 0.78 16 31 H 0.04 0.89 7.57 -51.93 -0.39 0.49 16 32 H 0.17 2.38 8.06 -52.49 -0.42 1.95 16 33 H 0.16 2.67 5.91 -52.49 -0.31 2.36 16 34 H 0.42 6.28 8.30 -40.82 -0.34 5.94 16 35 H 0.10 0.85 7.49 -51.93 -0.39 0.47 16 36 H 0.09 0.79 7.76 -51.93 -0.40 0.39 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 41 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.14 1.67 6.29 -52.48 -0.33 1.34 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -33.25 358.42 -8.72 -41.97 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.66 Total: 7.09 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -5.45 Total: -0.69 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.52 Total: -54.64 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.14 Total: -14.32 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.67 Total: 15.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.25 -8.72 -41.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192702912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.057 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds