Wall clock time and date at job start Sat Apr 11 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48505 * 109.46823 * 89.99600 * 3 2 1 5 5 H 1.48499 * 109.47133 * 209.99778 * 3 2 1 6 6 H 1.48498 * 109.46927 * 329.99689 * 3 2 1 7 7 C 1.37877 * 120.00437 * 180.27387 * 2 1 3 8 8 H 1.08004 * 119.99614 * 359.72492 * 7 2 1 9 9 C 1.50698 * 120.00146 * 179.72881 * 7 2 1 10 10 N 1.46503 * 109.46742 * 179.97438 * 9 7 2 11 11 C 1.34986 * 125.97147 * 124.71963 * 10 9 7 12 12 C 1.35215 * 107.87860 * 179.89408 * 11 10 9 13 13 C 1.40463 * 107.86459 * 0.35842 * 12 11 10 14 14 N 1.39929 * 125.97975 * 179.73548 * 13 12 11 15 15 C 1.34774 * 119.99954 * 0.02562 * 14 13 12 16 16 O 1.21388 * 120.00110 * 0.02562 * 15 14 13 17 17 C 1.49257 * 119.99840 * 179.97438 * 15 14 13 18 18 O 1.21382 * 120.00174 * 354.93824 * 17 15 14 19 19 N 1.34778 * 119.99940 * 174.93315 * 17 15 14 20 20 C 1.46535 * 124.95728 * 5.09865 * 19 17 15 21 21 C 1.53750 * 105.18952 * 179.97438 * 20 19 17 22 22 C 1.51217 * 104.54859 * 0.02562 * 21 20 19 23 23 C 1.38164 * 130.98950 * 180.02562 * 22 21 20 24 24 C 1.38248 * 120.14675 * 179.15077 * 23 22 21 25 25 C 1.38306 * 119.83634 * 0.78654 * 24 23 22 26 26 C 1.37816 * 120.23398 * 359.50250 * 25 24 23 27 27 C 1.38618 * 108.53804 * 359.75431 * 22 21 20 28 28 N 1.31273 * 108.04022 * 359.77959 * 13 12 11 29 29 H 0.96994 * 120.00054 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47360 * 299.99714 * 9 7 2 31 31 H 1.09003 * 109.47427 * 60.00293 * 9 7 2 32 32 H 1.07999 * 126.06329 * 0.03118 * 11 10 9 33 33 H 1.07992 * 126.06936 * 180.11953 * 12 11 10 34 34 H 0.97002 * 120.00195 * 180.02562 * 14 13 12 35 35 H 1.08997 * 110.29968 * 298.90239 * 20 19 17 36 36 H 1.09001 * 110.30204 * 60.94937 * 20 19 17 37 37 H 1.09000 * 110.42256 * 118.76760 * 21 20 19 38 38 H 1.08999 * 110.41939 * 241.23185 * 21 20 19 39 39 H 1.08003 * 119.92605 * 359.97438 * 23 22 21 40 40 H 1.08005 * 120.07942 * 180.30930 * 24 23 22 41 41 H 1.08009 * 119.88064 * 179.52348 * 25 24 23 42 42 H 1.08006 * 119.86242 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0046 -1.1940 -0.0057 8 1 1.4646 -2.1293 -0.0057 9 6 3.5116 -1.1939 -0.0119 10 7 3.9999 -2.5751 -0.0166 11 6 4.8471 -3.1135 -0.9191 12 6 5.0533 -4.4050 -0.5760 13 6 4.2966 -4.6706 0.5772 14 7 4.2278 -5.8948 1.2515 15 6 4.9303 -6.9529 0.8006 16 8 5.6232 -6.8438 -0.1902 17 6 4.8572 -8.2585 1.5201 18 8 4.2396 -8.3439 2.5615 19 7 5.4770 -9.3428 1.0134 20 6 6.3366 -9.3405 -0.1734 21 6 6.7975 -10.7978 -0.3398 22 6 6.1402 -11.5371 0.8040 23 6 6.1873 -12.8689 1.1683 24 6 5.5014 -13.3078 2.2855 25 6 4.7538 -12.4131 3.0294 26 6 4.6988 -11.0847 2.6667 27 6 5.3979 -10.6312 1.5455 28 7 3.6646 -3.5695 0.9113 29 1 -0.4850 0.8400 -0.0004 30 1 3.8713 -0.6780 -0.9021 31 1 3.8786 -0.6822 0.8779 32 1 5.2847 -2.6026 -1.7640 33 1 5.6844 -5.1087 -1.0982 34 1 3.6744 -5.9819 2.0434 35 1 5.7718 -9.0202 -1.0488 36 1 7.1946 -8.6865 -0.0176 37 1 6.4579 -11.1973 -1.2954 38 1 7.8827 -10.8646 -0.2627 39 1 6.7721 -13.5663 0.5868 40 1 5.5430 -14.3483 2.5722 41 1 4.2113 -12.7567 3.8980 42 1 4.1134 -10.3911 3.2522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192702912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:14 Heat of formation + Delta-G solvation = 47.564913 kcal Electronic energy + Delta-G solvation = -27774.684837 eV Core-core repulsion = 23721.720630 eV Total energy + Delta-G solvation = -4052.964208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.80035 -42.15009 -40.82228 -39.48006 -37.65989 -36.40444 -35.25548 -33.47056 -33.16962 -31.19724 -31.08935 -30.01758 -29.25601 -27.02638 -24.77105 -24.15644 -23.83730 -22.63684 -22.23797 -21.54671 -20.82097 -19.15564 -18.99731 -18.47854 -18.10382 -17.83949 -17.18859 -16.85709 -16.63981 -16.57117 -16.18826 -15.96386 -15.52396 -15.25125 -14.99377 -14.90648 -14.68142 -14.46213 -13.94094 -13.90055 -13.76351 -13.64773 -13.35225 -13.13260 -13.00365 -12.87473 -12.66695 -12.35220 -12.24106 -11.88565 -11.83736 -11.75160 -11.50693 -11.31823 -10.88949 -10.83479 -9.88658 -9.77475 -9.25611 -8.93859 -8.38291 -6.49251 -0.37381 0.39044 0.49336 0.63224 1.09967 1.35693 1.39793 1.48067 1.62899 1.65535 2.14477 2.26041 2.28426 2.80817 2.90134 2.94425 3.48695 3.56264 3.83804 4.05253 4.09174 4.14417 4.17259 4.30851 4.38615 4.51535 4.57991 4.62336 4.70715 4.78980 4.82119 4.89989 4.91764 4.99690 5.07895 5.13820 5.22463 5.36339 5.46278 5.58193 5.68931 5.78934 5.90983 5.96688 6.01554 6.29942 6.36759 6.55621 6.56784 6.89010 7.13641 8.78772 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029968 B = 0.002018 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.114447 B =13874.699657 C =14524.194948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.225 1.225 6 H -0.279 1.279 7 C -0.549 4.549 8 H 0.025 0.975 9 C 0.238 3.762 10 N -0.339 5.339 11 C 0.067 3.933 12 C -0.286 4.286 13 C 0.258 3.742 14 N -0.601 5.601 15 C 0.525 3.475 16 O -0.490 6.490 17 C 0.521 3.479 18 O -0.518 6.518 19 N -0.524 5.524 20 C 0.097 3.903 21 C -0.081 4.081 22 C -0.127 4.127 23 C -0.081 4.081 24 C -0.129 4.129 25 C -0.104 4.104 26 C -0.150 4.150 27 C 0.100 3.900 28 N -0.344 5.344 29 H 0.272 0.728 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.218 0.782 33 H 0.180 0.820 34 H 0.426 0.574 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.145 0.855 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.312 -25.398 -1.500 31.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.148 1.148 6 H -0.204 1.204 7 C -0.587 4.587 8 H 0.043 0.957 9 C 0.118 3.882 10 N -0.121 5.121 11 C -0.081 4.081 12 C -0.316 4.316 13 C 0.004 3.996 14 N -0.250 5.250 15 C 0.306 3.694 16 O -0.363 6.363 17 C 0.305 3.695 18 O -0.394 6.394 19 N -0.247 5.247 20 C -0.023 4.023 21 C -0.118 4.118 22 C -0.130 4.130 23 C -0.099 4.099 24 C -0.148 4.148 25 C -0.122 4.122 26 C -0.171 4.171 27 C 0.007 3.993 28 N -0.175 5.175 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.235 0.765 33 H 0.198 0.802 34 H 0.264 0.736 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.177 0.823 40 H 0.176 0.824 41 H 0.163 0.837 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 18.466 -24.458 -0.848 30.658 hybrid contribution -0.674 0.733 0.355 1.058 sum 17.792 -23.725 -0.493 29.659 Atomic orbital electron populations 1.70054 1.08667 1.28834 1.50590 1.25967 0.95798 1.03691 0.93208 0.85598 0.80005 0.77058 0.79559 1.19255 1.14779 1.20415 1.21237 0.90601 0.93687 1.53146 0.95688 1.19962 0.94078 0.74171 0.99981 1.48597 1.34087 1.09964 1.19463 1.23355 0.93941 0.94538 0.96301 1.21803 1.11504 0.97489 1.00829 1.19323 0.98754 0.86360 0.95191 1.42038 1.46393 1.06312 1.30235 1.19703 0.80629 0.84224 0.84873 1.90672 1.38147 1.83226 1.24248 1.19605 0.80414 0.84461 0.85022 1.90764 1.41396 1.84558 1.22700 1.45573 1.45038 1.05312 1.28776 1.22640 0.94292 0.99459 0.85908 1.21307 1.02546 0.90352 0.97602 1.20433 1.00185 0.94020 0.98371 1.20822 0.99001 0.93123 0.96974 1.21509 0.97153 1.01036 0.95077 1.21221 0.98938 0.91525 1.00509 1.21064 1.01581 0.97669 0.96758 1.18676 1.00327 0.83535 0.96765 1.77390 1.25400 0.96842 1.17854 0.91891 0.89316 0.93650 0.76549 0.80246 0.73569 0.88610 0.88368 0.86689 0.86461 0.82257 0.82439 0.83709 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 2 C 0.01 0.68 5.47 84.65 0.46 1.15 16 3 Si 0.96 40.33 27.47 68.60 1.88 42.22 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.23 -8.02 6.54 99.48 0.65 -7.37 16 6 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -31.50 9.79 25.60 0.25 -31.25 16 8 H 0.02 1.69 8.06 -2.91 -0.02 1.66 16 9 C 0.24 10.73 5.33 85.63 0.46 11.19 16 10 N -0.34 -14.75 3.67 -351.85 -1.29 -16.04 16 11 C 0.07 2.27 11.43 83.51 0.95 3.23 16 12 C -0.29 -9.94 9.60 22.11 0.21 -9.72 16 13 C 0.26 10.14 8.10 133.40 1.08 11.22 16 14 N -0.60 -20.07 5.43 -308.98 -1.68 -21.75 16 15 C 0.53 15.45 7.81 87.21 0.68 16.13 16 16 O -0.49 -14.10 11.19 -3.37 -0.04 -14.14 16 17 C 0.52 14.55 7.84 87.21 0.68 15.23 16 18 O -0.52 -16.47 14.66 -3.35 -0.05 -16.52 16 19 N -0.52 -12.13 3.12 -631.23 -1.97 -14.10 16 20 C 0.10 1.58 5.67 86.63 0.49 2.07 16 21 C -0.08 -0.82 6.94 30.26 0.21 -0.61 16 22 C -0.13 -1.94 6.23 -19.63 -0.12 -2.06 16 23 C -0.08 -0.89 10.04 22.25 0.22 -0.67 16 24 C -0.13 -1.47 10.06 22.29 0.22 -1.24 16 25 C -0.10 -1.64 10.02 22.19 0.22 -1.42 16 26 C -0.15 -3.38 9.46 22.52 0.21 -3.17 16 27 C 0.10 2.21 6.62 38.34 0.25 2.46 16 28 N -0.34 -16.01 12.42 -54.54 -0.68 -16.69 16 29 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.09 3.40 7.12 -2.39 -0.02 3.39 16 31 H 0.05 1.99 7.57 -2.39 -0.02 1.97 16 32 H 0.22 5.10 8.06 -2.91 -0.02 5.08 16 33 H 0.18 5.56 5.91 -2.91 -0.02 5.54 16 34 H 0.43 13.67 8.30 -92.71 -0.77 12.90 16 35 H 0.10 1.57 7.49 -2.39 -0.02 1.55 16 36 H 0.10 1.51 7.76 -2.39 -0.02 1.49 16 37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 40 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.12 3.09 6.29 -2.91 -0.02 3.07 16 Total: -1.00 -78.48 358.42 3.24 -75.24 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.26 Total: 27.25 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.50 Total: 12.53 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -5.32 Total: -126.58 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.09 Total: -30.66 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 1.88 Total: 42.22 kcal Total: -78.48 3.24 -75.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192702912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.807 kcal (2) G-P(sol) polarization free energy of solvation -78.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds