Wall clock time and date at job start Sat Apr 11 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 120.00333 * 2 1 4 4 O 1.21590 * 119.99341 * 0.02562 * 3 2 1 5 5 C 1.47581 * 120.00187 * 179.97438 * 3 2 1 6 6 C 1.39756 * 120.07155 * 180.02562 * 5 3 2 7 7 C 1.37656 * 119.92839 * 180.02562 * 6 5 3 8 8 C 1.39157 * 120.07079 * 0.02564 * 7 6 5 9 9 N 1.39345 * 119.92657 * 179.97438 * 8 7 6 10 10 C 1.34767 * 120.00068 * 144.83003 * 9 8 7 11 11 O 1.21590 * 120.00489 * 4.50033 * 10 9 8 12 12 C 1.47496 * 120.00282 * 184.49480 * 10 9 8 13 13 C 1.39690 * 120.19422 * 359.97438 * 12 10 9 14 14 C 1.37823 * 119.91470 * 180.02562 * 13 12 10 15 15 C 1.38577 * 120.32725 * 0.02562 * 14 13 12 16 16 C 1.38024 * 120.40580 * 359.97438 * 15 14 13 17 17 C 1.38835 * 120.07647 * 359.97438 * 16 15 14 18 18 O 1.35512 * 120.16554 * 180.02562 * 17 16 15 19 19 C 1.34813 * 117.00107 * 354.65112 * 18 17 16 20 20 H 1.08005 * 119.99745 * 5.03818 * 19 18 17 21 21 C 1.38696 * 120.00084 * 185.03798 * 19 18 17 22 22 N 1.31517 * 120.00114 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99934 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47244 * 90.00049 * 23 21 19 25 25 H 1.48502 * 109.46752 * 209.99436 * 23 21 19 26 26 H 1.48497 * 109.47146 * 329.99891 * 23 21 19 27 27 C 1.39158 * 120.14487 * 0.23019 * 8 7 6 28 28 C 1.37655 * 120.06863 * 359.48867 * 27 8 7 29 29 H 1.08994 * 109.47076 * 59.99985 * 1 2 3 30 30 H 1.08997 * 109.46808 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46859 * 299.99862 * 1 2 3 32 32 H 0.96999 * 119.99638 * 180.02562 * 2 1 3 33 33 H 1.08002 * 120.03566 * 0.02562 * 6 5 3 34 34 H 1.08003 * 119.96147 * 179.97438 * 7 6 5 35 35 H 0.97006 * 119.99981 * 324.83187 * 9 8 7 36 36 H 1.07997 * 120.04800 * 0.02562 * 13 12 10 37 37 H 1.08003 * 119.83774 * 180.29518 * 14 13 12 38 38 H 1.08003 * 119.79860 * 179.97438 * 15 14 13 39 39 H 1.07997 * 119.96522 * 179.97438 * 16 15 14 40 40 H 0.97002 * 120.00208 * 180.02562 * 22 21 19 41 41 H 1.07991 * 119.96025 * 179.72376 * 27 8 7 42 42 H 1.07997 * 120.03631 * 180.22958 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 6 3.6148 1.1671 0.0006 6 6 4.3151 2.3765 0.0011 7 6 5.6917 2.3731 0.0011 8 6 6.3859 1.1670 0.0000 9 7 7.7794 1.1670 -0.0005 10 6 8.4535 0.2125 0.6709 11 8 7.8486 -0.6949 1.2086 12 6 9.9251 0.2685 0.7533 13 6 10.6242 1.3087 0.1366 14 6 11.9993 1.3551 0.2168 15 6 12.6935 0.3738 0.9065 16 6 12.0162 -0.6601 1.5208 17 6 10.6309 -0.7227 1.4515 18 8 9.9641 -1.7366 2.0545 19 6 10.7084 -2.7130 2.6113 20 1 11.7845 -2.6241 2.6361 21 6 10.0923 -3.8317 3.1523 22 7 8.7819 -3.9397 3.1226 23 14 11.1238 -5.1850 3.9232 24 1 11.3158 -4.8990 5.3677 25 1 10.4291 -6.4879 3.7647 26 1 12.4462 -5.2438 3.2502 27 6 5.6916 -0.0390 -0.0059 28 6 4.3151 -0.0424 -0.0001 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9500 -0.8401 -0.0004 33 1 3.7769 3.3129 0.0015 34 1 6.2334 3.3074 0.0011 35 1 8.2642 1.8541 -0.4841 36 1 10.0880 2.0757 -0.4024 37 1 12.5383 2.1625 -0.2564 38 1 13.7711 0.4182 0.9636 39 1 12.5643 -1.4213 2.0561 40 1 8.3510 -4.7219 3.5013 41 1 6.2334 -0.9731 -0.0112 42 1 3.7768 -0.9786 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194110496.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:17 Heat of formation + Delta-G solvation = -56.332286 kcal Electronic energy + Delta-G solvation = -27954.880234 eV Core-core repulsion = 23865.117955 eV Total energy + Delta-G solvation = -4089.762279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.85305 -41.06719 -40.30564 -38.84908 -38.04531 -35.87149 -35.66779 -34.33199 -32.55570 -32.05736 -30.79197 -30.56310 -27.79831 -27.33776 -25.34066 -24.01927 -23.83599 -22.99875 -21.70725 -21.31820 -19.91256 -19.53765 -19.24847 -18.28809 -17.94834 -17.14402 -16.44038 -16.33823 -16.24721 -16.13737 -15.95736 -15.91295 -15.51924 -15.37733 -15.08720 -14.90849 -14.48875 -14.34579 -14.25923 -14.12557 -13.60356 -13.54873 -13.54508 -13.11762 -13.01403 -12.70128 -12.54493 -12.38971 -12.28930 -12.13307 -11.49287 -11.35666 -11.17789 -10.83677 -10.65356 -10.22733 -10.03053 -9.89490 -9.22997 -9.02739 -8.45678 -6.15953 -0.32776 0.12498 0.36263 0.71735 1.33125 1.43671 1.51210 1.67477 1.98179 2.10245 2.15148 2.22651 2.81307 2.88917 3.20455 3.42811 3.69430 3.74080 3.91700 3.92350 4.05667 4.25098 4.27666 4.38323 4.44763 4.49719 4.53011 4.61063 4.64507 4.90213 4.93204 4.97132 5.06107 5.10241 5.13995 5.27366 5.27741 5.35672 5.43222 5.46996 5.59325 5.69163 5.90538 5.94886 6.14841 6.43667 6.48552 6.94065 7.12184 7.27823 7.77105 8.74132 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.002931 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.750079 B = 9552.201227 C =11899.064991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.725 5.725 3 C 0.561 3.439 4 O -0.579 6.579 5 C -0.174 4.174 6 C -0.041 4.041 7 C -0.146 4.146 8 C 0.174 3.826 9 N -0.660 5.660 10 C 0.549 3.451 11 O -0.536 6.536 12 C -0.246 4.246 13 C -0.028 4.028 14 C -0.200 4.200 15 C -0.037 4.037 16 C -0.258 4.258 17 C 0.152 3.848 18 O -0.185 6.185 19 C -0.427 4.427 20 H 0.107 0.893 21 C -0.018 4.018 22 N -0.901 5.901 23 Si 1.018 2.982 24 H -0.263 1.263 25 H -0.273 1.273 26 H -0.249 1.249 27 C -0.155 4.155 28 C -0.058 4.058 29 H 0.057 0.943 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.414 0.586 33 H 0.149 0.851 34 H 0.168 0.832 35 H 0.426 0.574 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.153 0.847 39 H 0.124 0.876 40 H 0.271 0.729 41 H 0.114 0.886 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 10.805 -9.385 14.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.376 5.376 3 C 0.350 3.650 4 O -0.460 6.460 5 C -0.178 4.178 6 C -0.061 4.061 7 C -0.167 4.167 8 C 0.078 3.922 9 N -0.308 5.308 10 C 0.341 3.659 11 O -0.412 6.412 12 C -0.251 4.251 13 C -0.046 4.046 14 C -0.219 4.219 15 C -0.055 4.055 16 C -0.277 4.277 17 C 0.097 3.903 18 O -0.087 6.087 19 C -0.503 4.503 20 H 0.124 0.876 21 C -0.218 4.218 22 N -0.536 5.536 23 Si 0.837 3.163 24 H -0.188 1.188 25 H -0.197 1.197 26 H -0.172 1.172 27 C -0.176 4.176 28 C -0.077 4.077 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.071 0.929 32 H 0.251 0.749 33 H 0.167 0.833 34 H 0.185 0.815 35 H 0.267 0.733 36 H 0.181 0.819 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.141 0.859 40 H 0.080 0.920 41 H 0.132 0.868 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.854 10.646 -8.880 14.689 hybrid contribution 0.664 -1.253 0.479 1.496 sum -4.191 9.394 -8.401 13.281 Atomic orbital electron populations 1.21732 0.77976 1.04421 1.01849 1.45765 1.08881 1.08486 1.74495 1.18331 0.87388 0.83919 0.75368 1.90728 1.70632 1.32422 1.52248 1.19905 0.92480 0.94837 1.10538 1.21202 0.93292 0.97854 0.93720 1.21116 0.93948 0.96909 1.04681 1.18201 0.83170 0.94479 0.96322 1.43193 1.04182 1.31410 1.52032 1.18660 0.88216 0.81253 0.77726 1.90944 1.69965 1.34488 1.45849 1.19099 0.91296 1.02033 1.12681 1.21343 0.95202 0.94031 0.94047 1.21188 0.93530 1.01866 1.05268 1.21465 1.00989 0.91213 0.91851 1.21309 0.92725 1.04111 1.09565 1.20044 0.92121 0.88441 0.89702 1.84153 1.35272 1.28500 1.60809 1.22010 0.92108 0.98011 1.38153 0.87610 1.26678 0.97455 1.00300 0.97388 1.70294 1.10554 1.29783 1.42975 0.84604 0.77731 0.75443 0.78494 1.18830 1.19733 1.17206 1.21256 0.94903 0.98147 1.03294 1.21256 0.93134 0.97839 0.95516 0.92429 0.87167 0.92869 0.74919 0.83300 0.81484 0.73304 0.81888 0.81759 0.82886 0.85871 0.92000 0.86817 0.83528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.70 127.77 1.37 2.64 16 2 N -0.72 -14.29 5.66 -487.73 -2.76 -17.05 16 3 C 0.56 15.00 7.76 86.71 0.67 15.68 16 4 O -0.58 -18.87 16.34 -4.00 -0.07 -18.94 16 5 C -0.17 -4.63 5.88 -20.08 -0.12 -4.75 16 6 C -0.04 -1.02 9.58 22.50 0.22 -0.80 16 7 C -0.15 -3.40 9.94 22.35 0.22 -3.18 16 8 C 0.17 5.26 6.29 38.39 0.24 5.50 16 9 N -0.66 -19.67 5.26 -306.39 -1.61 -21.28 16 10 C 0.55 23.22 7.60 86.69 0.66 23.88 16 11 O -0.54 -29.27 12.60 16.90 0.21 -29.06 16 12 C -0.25 -9.95 5.89 -19.99 -0.12 -10.07 16 13 C -0.03 -0.76 9.53 22.52 0.21 -0.55 16 14 C -0.20 -4.85 10.02 22.25 0.22 -4.63 16 15 C -0.04 -1.07 10.03 22.30 0.22 -0.85 16 16 C -0.26 -10.45 9.16 22.36 0.20 -10.25 16 17 C 0.15 7.45 6.66 22.91 0.15 7.61 16 18 O -0.19 -11.26 7.84 0.95 0.01 -11.25 16 19 C -0.43 -24.91 9.49 67.93 0.64 -24.27 16 20 H 0.11 5.54 5.20 -2.91 -0.02 5.52 16 21 C -0.02 -1.05 5.49 84.85 0.47 -0.59 16 22 N -0.90 -56.79 13.67 21.62 0.30 -56.50 16 23 Si 1.02 42.86 29.55 68.60 2.03 44.88 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 27 C -0.16 -5.31 8.66 22.35 0.19 -5.11 16 28 C -0.06 -1.61 9.53 22.50 0.21 -1.39 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.41 6.34 6.85 -92.71 -0.63 5.71 16 33 H 0.15 3.31 7.64 -2.91 -0.02 3.28 16 34 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.43 8.48 6.86 -92.70 -0.64 7.84 16 36 H 0.16 2.72 6.41 -2.91 -0.02 2.70 16 37 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 39 H 0.12 5.10 5.64 -2.91 -0.02 5.08 16 40 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 41 H 0.11 4.77 6.23 -2.92 -0.02 4.75 16 42 H 0.15 3.20 6.39 -2.91 -0.02 3.18 16 Total: -1.00 -89.16 362.59 3.63 -85.53 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.16 Total: 34.79 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 5.68 Total: -11.12 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -4.08 Total: -94.83 kcal Atomic # 8 Polarization: -59.41 SS G_CDS: 0.15 Total: -59.25 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -89.16 3.63 -85.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194110496.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.196 kcal (2) G-P(sol) polarization free energy of solvation -89.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds