Wall clock time and date at job start Sat Apr 11 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99517 * 2 1 4 4 O 1.20824 * 120.00326 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00007 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47265 * 179.97438 * 5 3 2 7 7 C 1.36530 * 120.00237 * 263.92718 * 6 5 3 8 8 H 1.07999 * 120.00480 * 202.23803 * 7 6 5 9 9 C 1.39257 * 119.99717 * 22.23758 * 7 6 5 10 10 N 1.31231 * 120.00165 * 8.62554 * 9 7 6 11 11 Si 1.86802 * 120.00252 * 188.62556 * 9 7 6 12 12 H 1.48497 * 109.46997 * 59.99548 * 11 9 7 13 13 H 1.48495 * 109.47640 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47067 * 300.00203 * 11 9 7 15 15 C 1.34777 * 120.00202 * 83.92813 * 6 5 3 16 16 O 1.21765 * 119.99919 * 359.97438 * 15 6 5 17 17 C 1.46318 * 120.00273 * 179.97438 * 15 6 5 18 18 C 1.35103 * 119.99997 * 186.85292 * 17 15 6 19 19 C 1.46889 * 120.00112 * 9.88198 * 18 17 15 20 20 C 1.39598 * 121.43756 * 47.50821 * 19 18 17 21 21 C 1.38883 * 119.43248 * 179.69169 * 20 19 18 22 22 N 1.30975 * 122.61776 * 0.65690 * 21 20 19 23 23 C 1.33563 * 122.47913 * 359.64297 * 22 21 20 24 24 C 1.40644 * 121.17640 * 180.02562 * 23 22 21 25 25 C 1.36129 * 119.70824 * 179.97438 * 24 23 22 26 26 C 1.39285 * 121.09206 * 359.96161 * 25 24 23 27 27 C 1.36387 * 120.79631 * 359.97438 * 26 25 24 28 28 C 1.39823 * 119.56883 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.46480 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47151 * 300.00144 * 1 2 3 31 31 H 1.09004 * 109.47047 * 60.00455 * 1 2 3 32 32 H 1.08998 * 109.47157 * 59.99501 * 5 3 2 33 33 H 1.09002 * 109.46953 * 299.99348 * 5 3 2 34 34 H 0.97009 * 120.00311 * 180.02562 * 10 9 7 35 35 H 1.07996 * 119.99925 * 6.86269 * 17 15 6 36 36 H 1.07996 * 119.99785 * 189.87537 * 18 17 15 37 37 H 1.08001 * 120.28677 * 359.97438 * 20 19 18 38 38 H 1.08000 * 118.68897 * 180.29408 * 21 20 19 39 39 H 1.07997 * 120.14445 * 359.96283 * 24 23 22 40 40 H 1.08000 * 119.45432 * 179.97438 * 25 24 23 41 41 H 1.07993 * 119.60044 * 180.02562 * 26 25 24 42 42 H 1.07993 * 120.21460 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.2946 3.2988 -1.1771 8 1 4.9247 4.1759 -1.1747 9 6 3.8013 2.7991 -2.3797 10 7 2.9038 1.8417 -2.3736 11 14 4.4172 3.4915 -4.0016 12 1 5.8844 3.2858 -4.1024 13 1 3.7409 2.7958 -5.1257 14 1 4.1156 4.9442 -4.0661 15 6 4.0546 3.3614 1.1594 16 8 3.7750 2.8096 2.2082 17 6 4.4699 4.7644 1.1589 18 6 4.6772 5.4079 2.3287 19 6 4.6993 4.6529 3.5884 20 6 5.4405 3.4772 3.7197 21 6 5.4368 2.7999 4.9321 22 7 4.7508 3.2120 5.9690 23 6 4.0066 4.3207 5.9419 24 6 3.2810 4.7384 7.0720 25 6 2.5324 5.8738 7.0114 26 6 2.4717 6.6339 5.8458 27 6 3.1632 6.2598 4.7314 28 6 3.9418 5.0988 4.7598 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7808 0.8892 34 1 2.5605 1.4934 -3.2114 35 1 4.6107 5.2856 0.2236 36 1 4.8266 6.4775 2.3374 37 1 6.0155 3.1000 2.8869 38 1 6.0182 1.8942 5.0218 39 1 3.3175 4.1608 7.9838 40 1 1.9766 6.1905 7.8815 41 1 1.8704 7.5307 5.8246 42 1 3.1096 6.8564 3.8328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255504427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:33 Heat of formation + Delta-G solvation = -18.109661 kcal Electronic energy + Delta-G solvation = -29425.531381 eV Core-core repulsion = 25337.426559 eV Total energy + Delta-G solvation = -4088.104822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.25176 -39.52430 -38.44653 -36.68770 -35.68444 -34.81749 -33.97394 -31.77858 -31.18734 -30.14733 -29.35718 -28.44897 -26.42911 -25.13541 -24.04795 -23.22004 -22.47759 -20.94273 -19.87119 -19.09216 -17.90875 -17.13672 -16.86325 -16.64090 -16.46445 -15.63714 -15.45676 -15.26219 -14.67964 -14.44384 -14.34869 -13.95912 -13.90305 -13.62408 -13.39495 -13.27672 -12.83915 -12.60563 -12.51643 -12.30247 -11.99464 -11.62493 -11.44668 -11.40586 -11.31365 -11.30868 -11.05272 -10.91021 -10.73584 -10.56970 -10.14980 -9.86606 -9.67659 -9.13722 -9.09036 -8.85759 -8.71149 -8.31562 -8.04309 -7.42047 -6.67618 -4.18619 0.59371 1.27697 1.72463 2.59021 3.01820 3.06345 3.08232 3.33476 3.55744 3.65958 3.93595 4.25411 4.48187 4.57109 4.67565 4.89788 4.92379 5.04225 5.08460 5.19151 5.45935 5.50041 5.66388 5.66767 5.70251 5.75435 5.87191 5.90475 5.96566 6.09951 6.18748 6.29859 6.36470 6.37019 6.41568 6.55975 6.61191 6.66019 6.73035 6.95215 6.99760 7.13040 7.21412 7.37279 7.49452 8.06048 8.38676 8.78497 9.05825 9.20209 9.64142 10.37205 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013079 B = 0.003699 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.339093 B = 7567.101420 C = 8466.719330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.489 3.511 4 O -0.503 6.503 5 C 0.156 3.844 6 N -0.408 5.408 7 C -0.331 4.331 8 H 0.106 0.894 9 C 0.039 3.961 10 N -0.868 5.868 11 Si 0.935 3.065 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.271 1.271 15 C 0.474 3.526 16 O -0.591 6.591 17 C -0.122 4.122 18 C -0.109 4.109 19 C 0.027 3.973 20 C -0.105 4.105 21 C 0.138 3.862 22 N -0.495 5.495 23 C 0.123 3.877 24 C -0.096 4.096 25 C -0.114 4.114 26 C -0.131 4.131 27 C -0.089 4.089 28 C -0.090 4.090 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.278 0.722 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 3.477 6.987 8.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.331 3.669 4 O -0.388 6.388 5 C 0.030 3.970 6 N -0.123 5.123 7 C -0.459 4.459 8 H 0.124 0.876 9 C -0.167 4.167 10 N -0.505 5.505 11 Si 0.760 3.240 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.196 1.196 15 C 0.266 3.734 16 O -0.478 6.478 17 C -0.144 4.144 18 C -0.130 4.130 19 C 0.019 3.981 20 C -0.125 4.125 21 C -0.033 4.033 22 N -0.204 5.204 23 C 0.002 3.998 24 C -0.114 4.114 25 C -0.134 4.134 26 C -0.149 4.149 27 C -0.108 4.108 28 C -0.092 4.092 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.167 0.833 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.905 2.926 8.119 8.838 hybrid contribution -0.397 0.789 -2.156 2.330 sum 1.508 3.715 5.962 7.185 Atomic orbital electron populations 1.22931 0.78671 1.01841 1.01597 1.86449 1.21685 1.35435 1.85686 1.23801 0.92166 0.80546 0.70416 1.90520 1.66531 1.36413 1.45369 1.20540 0.87402 0.85331 1.03723 1.43331 1.54604 1.08052 1.06361 1.19704 1.29906 1.13382 0.82875 0.87619 1.25420 0.94486 0.96422 1.00380 1.69593 1.25655 1.26481 1.28805 0.85860 0.78917 0.79198 0.79982 1.19488 1.20677 1.19592 1.18207 0.84231 0.86892 0.84025 1.90772 1.56195 1.69973 1.30879 1.23353 0.97249 0.95807 0.97942 1.21849 1.02237 0.98353 0.90588 1.20184 0.92725 0.93790 0.91425 1.22066 0.99321 0.93469 0.97638 1.22528 0.94538 0.98010 0.88235 1.67545 1.07978 1.13821 1.31096 1.18676 0.96640 0.91637 0.92829 1.20730 0.96718 0.96717 0.97258 1.20750 0.99255 0.95259 0.98125 1.20827 1.00457 1.00343 0.93276 1.20844 0.95986 0.95479 0.98446 1.19772 0.99084 0.96524 0.93851 0.89549 0.93168 0.92676 0.85388 0.90109 0.91148 0.84705 0.85248 0.85312 0.83297 0.85366 0.85994 0.86100 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.37 -8.12 10.57 -39.24 -0.41 -8.53 16 3 C 0.49 12.01 6.03 36.01 0.22 12.23 16 4 O -0.50 -13.95 15.74 -18.75 -0.30 -14.24 16 5 C 0.16 3.60 5.13 -5.19 -0.03 3.57 16 6 N -0.41 -9.69 2.16 -117.73 -0.25 -9.94 16 7 C -0.33 -7.72 9.02 -15.08 -0.14 -7.86 16 8 H 0.11 2.25 6.10 -52.49 -0.32 1.93 16 9 C 0.04 0.91 5.14 -17.43 -0.09 0.82 16 10 N -0.87 -21.35 8.76 55.51 0.49 -20.86 16 11 Si 0.93 18.12 29.56 -169.99 -5.03 13.09 16 12 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 13 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 15 C 0.47 10.91 6.59 -13.01 -0.09 10.82 16 16 O -0.59 -14.54 11.99 5.13 0.06 -14.48 16 17 C -0.12 -2.34 9.20 -37.45 -0.34 -2.68 16 18 C -0.11 -1.84 8.87 -37.20 -0.33 -2.17 16 19 C 0.03 0.50 4.60 -102.58 -0.47 0.03 16 20 C -0.10 -1.88 6.82 -38.84 -0.26 -2.15 16 21 C 0.14 2.36 11.09 -17.68 -0.20 2.17 16 22 N -0.50 -9.09 10.26 -11.13 -0.11 -9.20 16 23 C 0.12 2.22 6.62 -84.90 -0.56 1.66 16 24 C -0.10 -1.44 9.99 -39.43 -0.39 -1.83 16 25 C -0.11 -1.47 9.94 -39.95 -0.40 -1.87 16 26 C -0.13 -1.73 9.97 -39.86 -0.40 -2.13 16 27 C -0.09 -1.36 9.48 -39.66 -0.38 -1.74 16 28 C -0.09 -1.62 5.90 -104.69 -0.62 -2.24 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.05 1.00 8.13 -51.93 -0.42 0.57 16 32 H 0.13 2.93 6.36 -51.93 -0.33 2.60 16 33 H 0.08 1.75 7.61 -51.93 -0.40 1.36 16 34 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 35 H 0.14 2.37 6.32 -52.49 -0.33 2.04 16 36 H 0.13 1.71 7.92 -52.49 -0.42 1.29 16 37 H 0.13 2.24 7.42 -52.49 -0.39 1.85 16 38 H 0.15 2.07 8.06 -52.49 -0.42 1.64 16 39 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.13 1.71 7.27 -52.49 -0.38 1.33 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -31.83 359.25 -8.21 -40.04 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.66 Total: 10.22 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -3.41 Total: 8.49 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.12 Total: -40.01 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -0.65 Total: -37.25 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.83 -8.21 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255504427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.929 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds