Wall clock time and date at job start Sat Apr 11 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99517 * 2 1 4 4 O 1.20824 * 120.00326 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00007 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47265 * 179.97438 * 5 3 2 7 7 C 1.36530 * 120.00237 * 263.92718 * 6 5 3 8 8 H 1.07999 * 120.00480 * 202.23803 * 7 6 5 9 9 C 1.39257 * 119.99717 * 22.23758 * 7 6 5 10 10 N 1.31231 * 120.00165 * 8.62554 * 9 7 6 11 11 Si 1.86802 * 120.00252 * 188.62556 * 9 7 6 12 12 H 1.48497 * 109.46997 * 59.99548 * 11 9 7 13 13 H 1.48495 * 109.47640 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47067 * 300.00203 * 11 9 7 15 15 C 1.34777 * 120.00202 * 83.92813 * 6 5 3 16 16 O 1.21765 * 119.99919 * 359.97438 * 15 6 5 17 17 C 1.46318 * 120.00273 * 179.97438 * 15 6 5 18 18 C 1.35103 * 119.99997 * 186.85292 * 17 15 6 19 19 C 1.46889 * 120.00112 * 9.88198 * 18 17 15 20 20 C 1.39598 * 121.43756 * 47.50821 * 19 18 17 21 21 C 1.38883 * 119.43248 * 179.69169 * 20 19 18 22 22 N 1.30975 * 122.61776 * 0.65690 * 21 20 19 23 23 C 1.33563 * 122.47913 * 359.64297 * 22 21 20 24 24 C 1.40644 * 121.17640 * 180.02562 * 23 22 21 25 25 C 1.36129 * 119.70824 * 179.97438 * 24 23 22 26 26 C 1.39285 * 121.09206 * 359.96161 * 25 24 23 27 27 C 1.36387 * 120.79631 * 359.97438 * 26 25 24 28 28 C 1.39823 * 119.56883 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.46480 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47151 * 300.00144 * 1 2 3 31 31 H 1.09004 * 109.47047 * 60.00455 * 1 2 3 32 32 H 1.08998 * 109.47157 * 59.99501 * 5 3 2 33 33 H 1.09002 * 109.46953 * 299.99348 * 5 3 2 34 34 H 0.97009 * 120.00311 * 180.02562 * 10 9 7 35 35 H 1.07996 * 119.99925 * 6.86269 * 17 15 6 36 36 H 1.07996 * 119.99785 * 189.87537 * 18 17 15 37 37 H 1.08001 * 120.28677 * 359.97438 * 20 19 18 38 38 H 1.08000 * 118.68897 * 180.29408 * 21 20 19 39 39 H 1.07997 * 120.14445 * 359.96283 * 24 23 22 40 40 H 1.08000 * 119.45432 * 179.97438 * 25 24 23 41 41 H 1.07993 * 119.60044 * 180.02562 * 26 25 24 42 42 H 1.07993 * 120.21460 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.2946 3.2988 -1.1771 8 1 4.9247 4.1759 -1.1747 9 6 3.8013 2.7991 -2.3797 10 7 2.9038 1.8417 -2.3736 11 14 4.4172 3.4915 -4.0016 12 1 5.8844 3.2858 -4.1024 13 1 3.7409 2.7958 -5.1257 14 1 4.1156 4.9442 -4.0661 15 6 4.0546 3.3614 1.1594 16 8 3.7750 2.8096 2.2082 17 6 4.4699 4.7644 1.1589 18 6 4.6772 5.4079 2.3287 19 6 4.6993 4.6529 3.5884 20 6 5.4405 3.4772 3.7197 21 6 5.4368 2.7999 4.9321 22 7 4.7508 3.2120 5.9690 23 6 4.0066 4.3207 5.9419 24 6 3.2810 4.7384 7.0720 25 6 2.5324 5.8738 7.0114 26 6 2.4717 6.6339 5.8458 27 6 3.1632 6.2598 4.7314 28 6 3.9418 5.0988 4.7598 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7808 0.8892 34 1 2.5605 1.4934 -3.2114 35 1 4.6107 5.2856 0.2236 36 1 4.8266 6.4775 2.3374 37 1 6.0155 3.1000 2.8869 38 1 6.0182 1.8942 5.0218 39 1 3.3175 4.1608 7.9838 40 1 1.9766 6.1905 7.8815 41 1 1.8704 7.5307 5.8246 42 1 3.1096 6.8564 3.8328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255504427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:32 Heat of formation + Delta-G solvation = -35.409713 kcal Electronic energy + Delta-G solvation = -29426.281568 eV Core-core repulsion = 25337.426559 eV Total energy + Delta-G solvation = -4088.855008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59945 -41.25000 -40.15420 -37.93256 -37.36671 -36.62865 -35.45156 -33.53633 -32.52284 -31.36267 -30.75249 -30.01183 -27.98736 -26.83260 -25.43369 -24.47115 -23.80156 -22.46606 -21.57179 -20.69797 -19.21300 -18.58786 -18.49687 -18.29364 -17.93255 -17.31746 -17.07095 -16.86376 -16.24676 -15.93372 -15.72440 -15.33595 -15.19203 -14.97276 -14.86570 -14.63319 -14.29137 -14.25928 -14.03606 -13.77197 -13.50293 -13.16932 -13.07125 -12.89088 -12.64095 -12.56483 -12.44528 -12.40934 -12.21894 -12.12998 -11.63054 -11.59881 -11.42499 -10.95890 -10.49649 -10.32865 -10.14223 -9.88982 -9.50859 -8.76730 -8.40112 -5.98836 -0.68507 0.03656 0.39007 1.25349 1.48726 1.51444 1.58760 1.73362 1.94443 2.15362 2.31085 2.57194 2.91416 3.18543 3.22058 3.46978 3.64523 3.82648 3.93035 4.06372 4.18848 4.27283 4.30479 4.33590 4.36140 4.36920 4.50429 4.54766 4.61068 4.66430 4.66883 4.77702 4.86336 5.08731 5.15882 5.20865 5.25910 5.39836 5.43174 5.52443 5.60662 5.65644 5.72383 5.73949 6.03072 6.30261 7.03107 7.06969 7.20243 7.46987 7.89732 8.64744 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013079 B = 0.003699 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.339093 B = 7567.101420 C = 8466.719330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.491 3.509 4 O -0.543 6.543 5 C 0.156 3.844 6 N -0.424 5.424 7 C -0.347 4.347 8 H 0.122 0.878 9 C -0.005 4.005 10 N -0.900 5.900 11 Si 1.001 2.999 12 H -0.258 1.258 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.470 3.530 16 O -0.615 6.615 17 C -0.154 4.154 18 C -0.071 4.071 19 C 0.000 4.000 20 C -0.115 4.115 21 C 0.124 3.876 22 N -0.509 5.509 23 C 0.091 3.909 24 C -0.112 4.112 25 C -0.102 4.102 26 C -0.119 4.119 27 C -0.110 4.110 28 C -0.110 4.110 29 H 0.134 0.866 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.126 0.874 33 H 0.086 0.914 34 H 0.273 0.727 35 H 0.150 0.850 36 H 0.172 0.828 37 H 0.125 0.875 38 H 0.173 0.827 39 H 0.141 0.859 40 H 0.162 0.838 41 H 0.159 0.841 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 5.460 7.888 9.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.334 3.666 4 O -0.431 6.431 5 C 0.030 3.970 6 N -0.140 5.140 7 C -0.474 4.474 8 H 0.139 0.861 9 C -0.206 4.206 10 N -0.539 5.539 11 Si 0.824 3.176 12 H -0.182 1.182 13 H -0.215 1.215 14 H -0.193 1.193 15 C 0.263 3.737 16 O -0.504 6.504 17 C -0.175 4.175 18 C -0.091 4.091 19 C -0.008 4.008 20 C -0.135 4.135 21 C -0.047 4.047 22 N -0.219 5.219 23 C -0.029 4.029 24 C -0.131 4.131 25 C -0.121 4.121 26 C -0.136 4.136 27 C -0.128 4.128 28 C -0.112 4.112 29 H 0.152 0.848 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.168 0.832 36 H 0.189 0.811 37 H 0.143 0.857 38 H 0.190 0.810 39 H 0.159 0.841 40 H 0.180 0.820 41 H 0.176 0.824 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.567 4.907 9.039 10.403 hybrid contribution -0.380 0.212 -2.149 2.192 sum 1.187 5.118 6.890 8.665 Atomic orbital electron populations 1.23271 0.76326 1.04830 1.01024 1.86424 1.24010 1.33987 1.85062 1.24060 0.92676 0.80635 0.69236 1.90477 1.67439 1.37743 1.47450 1.20538 0.86886 0.85911 1.03635 1.43501 1.55442 1.08220 1.06883 1.20124 1.30279 1.14087 0.82948 0.86055 1.26270 0.94430 0.96642 1.03300 1.69705 1.27147 1.28032 1.28983 0.84850 0.78751 0.78258 0.75692 1.18219 1.21494 1.19281 1.18862 0.83206 0.88232 0.83408 1.90747 1.57035 1.70982 1.31604 1.23276 1.00693 0.94000 0.99518 1.22297 0.97687 1.00004 0.89119 1.20521 0.93513 0.94374 0.92412 1.22137 0.99815 0.93680 0.97879 1.22903 0.94912 0.98860 0.87993 1.67575 1.08379 1.14409 1.31488 1.19195 0.97564 0.91979 0.94173 1.21024 0.97114 0.97991 0.96961 1.21245 0.97746 0.93741 0.99376 1.21330 0.99021 1.00995 0.92281 1.21124 0.96460 0.95105 1.00143 1.20028 0.99845 0.97719 0.93599 0.84767 0.93466 0.93550 0.85657 0.89652 0.91656 0.83245 0.81081 0.85707 0.81013 0.84117 0.82001 0.82358 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.36 10.56 113.37 1.20 2.56 16 2 O -0.38 -16.60 10.57 -51.36 -0.54 -17.15 16 3 C 0.49 24.83 6.03 71.24 0.43 25.26 16 4 O -0.54 -31.03 15.74 21.97 0.35 -30.68 16 5 C 0.16 7.50 5.13 85.64 0.44 7.93 16 6 N -0.42 -20.68 2.16 -644.57 -1.39 -22.07 16 7 C -0.35 -16.37 9.02 84.21 0.76 -15.62 16 8 H 0.12 5.13 6.10 -2.91 -0.02 5.11 16 9 C 0.00 -0.22 5.14 85.03 0.44 0.22 16 10 N -0.90 -45.40 8.76 21.71 0.19 -45.21 16 11 Si 1.00 37.17 29.56 68.60 2.03 39.19 16 12 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 13 H -0.29 -10.97 7.11 99.48 0.71 -10.26 16 14 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 15 C 0.47 22.04 6.59 86.34 0.57 22.61 16 16 O -0.61 -31.12 11.99 -4.56 -0.05 -31.18 16 17 C -0.15 -5.83 9.20 23.65 0.22 -5.62 16 18 C -0.07 -2.29 8.87 23.81 0.21 -2.07 16 19 C 0.00 0.02 4.60 -18.54 -0.09 -0.07 16 20 C -0.11 -4.22 6.82 22.75 0.16 -4.07 16 21 C 0.12 4.36 11.09 84.98 0.94 5.30 16 22 N -0.51 -18.87 10.26 -189.12 -1.94 -20.81 16 23 C 0.09 3.26 6.62 40.31 0.27 3.53 16 24 C -0.11 -3.19 9.99 22.37 0.22 -2.96 16 25 C -0.10 -2.25 9.94 22.03 0.22 -2.03 16 26 C -0.12 -2.67 9.97 22.09 0.22 -2.45 16 27 C -0.11 -3.10 9.48 22.22 0.21 -2.89 16 28 C -0.11 -3.86 5.90 -19.91 -0.12 -3.97 16 29 H 0.13 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 31 H 0.05 1.69 8.13 -2.38 -0.02 1.67 16 32 H 0.13 6.00 6.36 -2.39 -0.02 5.99 16 33 H 0.09 3.89 7.61 -2.39 -0.02 3.87 16 34 H 0.27 13.31 8.31 -92.70 -0.77 12.54 16 35 H 0.15 5.12 6.32 -2.91 -0.02 5.10 16 36 H 0.17 3.97 7.92 -2.91 -0.02 3.95 16 37 H 0.12 4.53 7.42 -2.91 -0.02 4.51 16 38 H 0.17 4.89 8.06 -2.91 -0.02 4.86 16 39 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.14 3.40 7.27 -2.91 -0.02 3.38 16 Total: -1.00 -71.76 359.25 5.99 -65.77 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: 1.06 Total: 36.48 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 6.29 Total: 25.67 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -3.14 Total: -88.10 kcal Atomic # 8 Polarization: -78.76 SS G_CDS: -0.25 Total: -79.01 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.19 kcal Total: -71.76 5.99 -65.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255504427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.359 kcal (2) G-P(sol) polarization free energy of solvation -71.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds