Wall clock time and date at job start Sat Apr 11 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48505 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 299.99913 * 3 2 1 6 6 H 1.48502 * 109.47342 * 59.99996 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21673 * 120.00212 * 359.72109 * 13 12 11 15 15 C 1.46833 * 119.99617 * 179.72433 * 13 12 11 16 16 C 1.38008 * 126.68299 * 359.68600 * 15 13 12 17 17 N 1.34583 * 108.88102 * 179.82961 * 16 15 13 18 18 H 0.96999 * 124.98641 * 180.17665 * 17 16 15 19 19 N 1.40009 * 110.02017 * 0.44488 * 17 16 15 20 20 C 1.36615 * 108.26216 * 359.72877 * 19 17 16 21 21 N 1.32089 * 122.59662 * 180.02562 * 20 19 17 22 22 C 1.33885 * 121.96948 * 359.92472 * 21 20 19 23 23 O 1.21972 * 120.78217 * 180.02562 * 22 21 20 24 24 C 1.47515 * 118.43577 * 0.06458 * 22 21 20 25 25 C 1.39262 * 121.87078 * 180.02562 * 24 22 21 26 26 C 1.37840 * 119.48609 * 179.97438 * 25 24 22 27 27 C 1.38730 * 120.46218 * 359.97438 * 26 25 24 28 28 C 1.37939 * 120.65398 * 359.97438 * 27 26 25 29 29 C 1.38396 * 131.53896 * 179.68236 * 19 17 16 30 30 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 32 32 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 33 33 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 34 34 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 35 35 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 36 36 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 37 37 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 38 38 H 1.07999 * 125.55717 * 359.97438 * 16 15 13 39 39 H 1.08005 * 120.25497 * 359.97438 * 25 24 22 40 40 H 1.08010 * 119.76760 * 179.97438 * 26 25 24 41 41 H 1.08002 * 119.67475 * 180.02562 * 27 26 25 42 42 H 1.07995 * 120.15930 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7870 -7.5936 -0.0087 15 6 2.9375 -8.4872 -0.0150 16 6 4.3145 -8.3945 -0.0217 17 7 4.8345 -9.6358 -0.0225 18 1 5.7824 -9.8417 -0.0243 19 7 3.8065 -10.5862 -0.0265 20 6 2.6114 -9.9242 -0.0222 21 7 1.4497 -10.5528 -0.0239 22 6 1.3668 -11.8891 -0.0316 23 8 0.2822 -12.4472 -0.0336 24 6 2.6179 -12.6705 -0.0368 25 6 2.6151 -14.0631 -0.0454 26 6 3.8136 -14.7440 -0.0505 27 6 5.0158 -14.0517 -0.0476 28 6 5.0331 -12.6724 -0.0402 29 6 3.8358 -11.9698 -0.0344 30 1 -0.4851 0.8400 0.0004 31 1 0.6248 -2.5563 -0.8919 32 1 0.6241 -2.5575 0.8881 33 1 2.8714 -3.6047 0.8890 34 1 2.8727 -3.6038 -0.8910 35 1 0.8541 -5.0447 -0.8923 36 1 0.8534 -5.0450 0.8877 37 1 3.3862 -5.9232 -0.0026 38 1 4.8821 -7.4757 -0.0235 39 1 1.6811 -14.6054 -0.0480 40 1 3.8167 -15.8241 -0.0567 41 1 5.9474 -14.5980 -0.0521 42 1 5.9736 -12.1416 -0.0384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264221569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:39 Heat of formation + Delta-G solvation = 60.316620 kcal Electronic energy + Delta-G solvation = -27370.828130 eV Core-core repulsion = 23318.416878 eV Total energy + Delta-G solvation = -4052.411252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.89072 -40.21299 -39.03316 -38.32336 -36.07113 -35.31144 -33.85729 -33.26858 -31.67272 -31.42536 -30.58373 -30.07544 -26.82926 -24.83500 -24.60173 -23.98714 -22.79753 -22.42429 -20.68581 -20.53362 -19.55177 -19.23464 -17.97560 -16.96343 -16.91595 -16.68904 -16.54036 -16.27767 -15.38149 -15.18233 -15.17995 -14.78877 -14.66337 -14.63681 -14.45541 -13.78610 -13.73996 -13.46712 -13.33813 -12.81568 -12.28977 -12.09388 -12.00523 -11.81667 -11.71031 -11.19061 -10.95680 -10.87675 -10.73317 -10.57957 -9.92868 -9.86502 -9.77098 -9.41623 -9.25624 -9.20029 -9.10386 -8.74571 -8.37506 -8.24568 -6.01650 -4.04997 0.00135 0.19502 0.29273 0.79165 1.31348 2.57155 2.68712 3.24664 3.29269 3.35664 3.36819 3.39307 3.55074 3.70089 3.76698 3.86624 4.03688 4.27241 4.34793 4.39859 4.43842 4.56540 4.65729 4.93780 5.08613 5.12154 5.26140 5.34128 5.45997 5.65659 5.74639 5.79531 5.81225 5.93654 6.03676 6.18693 6.49697 6.50353 6.61531 6.84635 7.01117 7.59292 7.64638 7.73482 7.77507 7.97358 8.03156 8.37323 8.48596 9.02119 9.59198 11.09560 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.001819 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.030958 B =15385.551116 C =16302.790008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.120 4.120 11 C 0.119 3.881 12 N -0.726 5.726 13 C 0.585 3.415 14 O -0.509 6.509 15 C -0.256 4.256 16 C 0.206 3.794 17 N -0.464 5.464 18 H 0.451 0.549 19 N -0.347 5.347 20 C 0.488 3.512 21 N -0.563 5.563 22 C 0.534 3.466 23 O -0.490 6.490 24 C -0.187 4.187 25 C -0.024 4.024 26 C -0.144 4.144 27 C -0.059 4.059 28 C -0.165 4.165 29 C 0.189 3.811 30 H 0.261 0.739 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.391 0.609 38 H 0.224 0.776 39 H 0.150 0.850 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.919 -28.235 -0.107 35.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.158 4.158 11 C -0.003 4.003 12 N -0.377 5.377 13 C 0.369 3.631 14 O -0.383 6.383 15 C -0.273 4.273 16 C 0.065 3.935 17 N -0.179 5.179 18 H 0.298 0.702 19 N -0.138 5.138 20 C 0.232 3.768 21 N -0.308 5.308 22 C 0.320 3.680 23 O -0.365 6.365 24 C -0.197 4.197 25 C -0.043 4.043 26 C -0.163 4.163 27 C -0.078 4.078 28 C -0.186 4.186 29 C 0.090 3.910 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.224 0.776 38 H 0.240 0.760 39 H 0.168 0.832 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.630 -28.631 -0.102 34.159 hybrid contribution 2.392 0.553 -0.012 2.455 sum 21.023 -28.078 -0.114 35.076 Atomic orbital electron populations 1.69972 1.06038 1.26584 1.50496 1.25036 0.94846 0.99291 0.95342 0.86543 0.79962 0.83880 0.77601 1.19827 1.21038 1.21032 1.21229 0.92961 0.90952 1.50921 0.92632 1.19046 0.93918 0.90815 0.97815 1.21882 0.99772 0.93380 1.00728 1.21662 0.91734 0.84519 1.02398 1.45939 1.10306 1.05349 1.76154 1.16651 0.87285 0.81373 0.77770 1.90930 1.15253 1.83999 1.48122 1.20308 0.91962 0.90404 1.24647 1.23253 0.93916 0.87111 0.89200 1.43497 1.03912 0.98991 1.71492 0.70199 1.45139 1.01637 1.01628 1.65356 1.21592 0.78468 0.91832 0.84915 1.69093 1.17616 1.11183 1.32879 1.18772 0.87831 0.84443 0.76962 1.90816 1.29492 1.70654 1.45588 1.21270 0.93484 0.96112 1.08829 1.21237 0.99641 0.91513 0.91894 1.21309 0.91776 1.00993 1.02227 1.21173 0.98984 0.92822 0.94825 1.20565 0.95201 0.95153 1.07653 1.17839 0.95721 0.77129 1.00286 0.92959 0.96173 0.96175 0.92754 0.92758 0.91520 0.91501 0.77563 0.75976 0.83238 0.84416 0.84424 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.12 -2.16 5.27 -26.73 -0.14 -2.30 16 11 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 12 N -0.73 -8.98 5.54 -61.57 -0.34 -9.33 16 13 C 0.58 8.56 7.79 -12.78 -0.10 8.46 16 14 O -0.51 -10.42 16.85 5.21 0.09 -10.33 16 15 C -0.26 -2.71 6.31 -102.80 -0.65 -3.36 16 16 C 0.21 0.75 11.45 -16.43 -0.19 0.57 16 17 N -0.46 -1.48 7.02 30.90 0.22 -1.26 16 18 H 0.45 -0.59 8.62 -182.67 -1.57 -2.16 16 19 N -0.35 -3.00 3.92 -8.40 -0.03 -3.03 16 20 C 0.49 6.45 7.97 -154.19 -1.23 5.22 16 21 N -0.56 -9.96 10.32 -10.96 -0.11 -10.07 16 22 C 0.53 8.95 7.95 -12.88 -0.10 8.85 16 23 O -0.49 -9.66 17.46 4.94 0.09 -9.58 16 24 C -0.19 -2.19 5.88 -104.88 -0.62 -2.81 16 25 C -0.02 -0.21 9.67 -39.35 -0.38 -0.59 16 26 C -0.14 -0.78 10.02 -39.55 -0.40 -1.18 16 27 C -0.06 -0.25 10.02 -39.51 -0.40 -0.64 16 28 C -0.16 -0.83 9.87 -39.47 -0.39 -1.22 16 29 C 0.19 1.66 6.66 -83.83 -0.56 1.10 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.39 3.04 7.38 -40.82 -0.30 2.74 16 38 H 0.22 -0.41 7.43 -52.49 -0.39 -0.80 16 39 H 0.15 1.27 7.81 -52.48 -0.41 0.86 16 40 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 41 H 0.14 0.16 8.06 -52.49 -0.42 -0.26 16 42 H 0.13 0.21 7.71 -52.49 -0.40 -0.19 16 LS Contribution 369.30 15.07 5.57 5.57 Total: -1.00 -43.24 369.30 -10.54 -53.78 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: -6.00 Total: -7.48 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -5.72 Total: 1.47 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.47 Total: -49.44 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.17 Total: -19.91 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -43.24 -10.54 -53.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264221569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.096 kcal (2) G-P(sol) polarization free energy of solvation -43.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds