Wall clock time and date at job start Sat Apr 11 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48505 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 299.99913 * 3 2 1 6 6 H 1.48502 * 109.47342 * 59.99996 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21673 * 120.00212 * 359.72109 * 13 12 11 15 15 C 1.46833 * 119.99617 * 179.72433 * 13 12 11 16 16 C 1.38008 * 126.68299 * 359.68600 * 15 13 12 17 17 N 1.34583 * 108.88102 * 179.82961 * 16 15 13 18 18 H 0.96999 * 124.98641 * 180.17665 * 17 16 15 19 19 N 1.40009 * 110.02017 * 0.44488 * 17 16 15 20 20 C 1.36615 * 108.26216 * 359.72877 * 19 17 16 21 21 N 1.32089 * 122.59662 * 180.02562 * 20 19 17 22 22 C 1.33885 * 121.96948 * 359.92472 * 21 20 19 23 23 O 1.21972 * 120.78217 * 180.02562 * 22 21 20 24 24 C 1.47515 * 118.43577 * 0.06458 * 22 21 20 25 25 C 1.39262 * 121.87078 * 180.02562 * 24 22 21 26 26 C 1.37840 * 119.48609 * 179.97438 * 25 24 22 27 27 C 1.38730 * 120.46218 * 359.97438 * 26 25 24 28 28 C 1.37939 * 120.65398 * 359.97438 * 27 26 25 29 29 C 1.38396 * 131.53896 * 179.68236 * 19 17 16 30 30 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 32 32 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 33 33 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 34 34 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 35 35 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 36 36 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 37 37 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 38 38 H 1.07999 * 125.55717 * 359.97438 * 16 15 13 39 39 H 1.08005 * 120.25497 * 359.97438 * 25 24 22 40 40 H 1.08010 * 119.76760 * 179.97438 * 26 25 24 41 41 H 1.08002 * 119.67475 * 180.02562 * 27 26 25 42 42 H 1.07995 * 120.15930 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7870 -7.5936 -0.0087 15 6 2.9375 -8.4872 -0.0150 16 6 4.3145 -8.3945 -0.0217 17 7 4.8345 -9.6358 -0.0225 18 1 5.7824 -9.8417 -0.0243 19 7 3.8065 -10.5862 -0.0265 20 6 2.6114 -9.9242 -0.0222 21 7 1.4497 -10.5528 -0.0239 22 6 1.3668 -11.8891 -0.0316 23 8 0.2822 -12.4472 -0.0336 24 6 2.6179 -12.6705 -0.0368 25 6 2.6151 -14.0631 -0.0454 26 6 3.8136 -14.7440 -0.0505 27 6 5.0158 -14.0517 -0.0476 28 6 5.0331 -12.6724 -0.0402 29 6 3.8358 -11.9698 -0.0344 30 1 -0.4851 0.8400 0.0004 31 1 0.6248 -2.5563 -0.8919 32 1 0.6241 -2.5575 0.8881 33 1 2.8714 -3.6047 0.8890 34 1 2.8727 -3.6038 -0.8910 35 1 0.8541 -5.0447 -0.8923 36 1 0.8534 -5.0450 0.8877 37 1 3.3862 -5.9232 -0.0026 38 1 4.8821 -7.4757 -0.0235 39 1 1.6811 -14.6054 -0.0480 40 1 3.8167 -15.8241 -0.0567 41 1 5.9474 -14.5980 -0.0521 42 1 5.9736 -12.1416 -0.0384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264221569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:38 Heat of formation + Delta-G solvation = 23.937399 kcal Electronic energy + Delta-G solvation = -27372.405652 eV Core-core repulsion = 23318.416878 eV Total energy + Delta-G solvation = -4053.988773 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.59502 -40.97932 -40.17128 -39.16205 -36.97976 -36.74468 -35.12487 -34.57866 -33.01735 -32.22098 -31.47739 -30.80552 -28.51153 -25.69319 -25.45411 -24.98224 -23.91690 -23.33145 -22.22359 -21.21569 -20.58323 -19.97611 -18.79175 -18.44970 -17.67557 -17.66743 -17.41769 -17.24098 -16.59933 -16.50616 -16.29440 -15.78389 -15.67256 -15.43805 -15.21588 -15.13751 -14.77796 -14.43087 -14.16417 -14.02584 -13.65920 -13.42616 -13.23369 -12.73912 -12.68214 -12.55652 -12.46031 -12.28432 -12.26527 -11.73047 -11.56068 -11.53598 -11.16404 -10.91807 -10.51120 -10.33964 -10.22891 -10.06315 -9.71562 -9.10554 -8.13917 -6.25337 -0.61372 -0.44217 -0.29071 0.26926 0.48533 1.45891 1.46120 1.59028 1.88239 2.01100 2.38121 2.42470 2.48328 2.71668 2.85003 3.08886 3.20372 3.29975 3.51090 3.68538 3.93928 4.02020 4.13434 4.16593 4.22582 4.31588 4.34572 4.42176 4.58275 4.66712 4.76349 4.87004 5.06054 5.13828 5.17588 5.27495 5.29084 5.36786 5.53406 5.62113 5.62882 5.80165 5.91879 6.10997 6.27826 6.57196 6.78532 6.94376 7.10975 7.44362 7.47230 8.98505 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.001819 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.030958 B =15385.551116 C =16302.790008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.968 3.032 4 H -0.252 1.252 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.017 3.983 10 C -0.097 4.097 11 C 0.132 3.868 12 N -0.702 5.702 13 C 0.586 3.414 14 O -0.587 6.587 15 C -0.318 4.318 16 C 0.288 3.712 17 N -0.416 5.416 18 H 0.481 0.519 19 N -0.347 5.347 20 C 0.468 3.532 21 N -0.644 5.644 22 C 0.514 3.486 23 O -0.566 6.566 24 C -0.220 4.220 25 C -0.048 4.048 26 C -0.129 4.129 27 C -0.043 4.043 28 C -0.145 4.145 29 C 0.172 3.828 30 H 0.261 0.739 31 H -0.012 1.012 32 H -0.012 1.012 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.420 0.580 38 H 0.299 0.701 39 H 0.131 0.869 40 H 0.169 0.831 41 H 0.187 0.813 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.799 -28.373 -0.122 41.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.793 3.207 4 H -0.175 1.175 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.572 4.572 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.135 4.135 11 C 0.007 3.993 12 N -0.356 5.356 13 C 0.374 3.626 14 O -0.467 6.467 15 C -0.334 4.334 16 C 0.142 3.858 17 N -0.132 5.132 18 H 0.336 0.664 19 N -0.134 5.134 20 C 0.214 3.786 21 N -0.393 5.393 22 C 0.303 3.697 23 O -0.447 6.447 24 C -0.229 4.229 25 C -0.067 4.067 26 C -0.148 4.148 27 C -0.062 4.062 28 C -0.165 4.165 29 C 0.074 3.926 30 H 0.070 0.930 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.258 0.742 38 H 0.313 0.687 39 H 0.149 0.851 40 H 0.186 0.814 41 H 0.205 0.795 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 27.727 -28.803 -0.117 39.980 hybrid contribution -0.097 0.565 -0.007 0.573 sum 27.630 -28.238 -0.124 39.507 Atomic orbital electron populations 1.70142 1.08138 1.27572 1.52102 1.26080 0.95692 1.03760 0.95062 0.85353 0.79481 0.78603 0.77284 1.17520 1.21022 1.21010 1.21751 0.93984 0.91720 1.49720 0.90784 1.19002 0.94729 0.93495 0.94814 1.21573 0.98222 0.90814 1.02848 1.21190 0.92113 0.85672 1.00279 1.45451 1.11045 1.03571 1.75486 1.17166 0.87021 0.82488 0.75909 1.90898 1.18899 1.85107 1.51770 1.19782 0.94259 0.87816 1.31585 1.24313 0.91053 0.88766 0.81656 1.43814 1.04229 0.97691 1.67426 0.66434 1.44996 1.02208 1.02310 1.63885 1.21718 0.79004 0.93134 0.84711 1.68839 1.21748 1.12407 1.36322 1.19376 0.89109 0.85035 0.76159 1.90711 1.32136 1.71773 1.50090 1.20937 0.92696 0.97053 1.12180 1.21269 1.00946 0.90682 0.93851 1.21711 0.90818 1.02546 0.99706 1.21803 0.99984 0.92725 0.91666 1.21160 0.95018 0.95643 1.04674 1.17997 0.95996 0.77094 1.01498 0.93045 0.99379 0.99385 0.90444 0.90432 0.93942 0.93926 0.74171 0.68664 0.85078 0.81379 0.79535 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.43 13.29 21.45 0.28 -57.14 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 4 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.53 -28.65 9.11 25.60 0.23 -28.41 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.02 0.88 4.97 29.85 0.15 1.03 16 10 C -0.10 -3.35 5.27 30.59 0.16 -3.19 16 11 C 0.13 4.46 5.67 86.38 0.49 4.95 16 12 N -0.70 -16.30 5.54 -466.92 -2.59 -18.89 16 13 C 0.59 17.64 7.79 86.49 0.67 18.32 16 14 O -0.59 -26.66 16.85 -4.26 -0.07 -26.74 16 15 C -0.32 -6.30 6.31 -18.68 -0.12 -6.42 16 16 C 0.29 0.22 11.45 84.22 0.96 1.19 16 17 N -0.42 0.14 7.02 -56.15 -0.39 -0.25 16 18 H 0.48 -5.73 8.62 -213.38 -1.84 -7.57 16 19 N -0.35 -5.14 3.92 -180.48 -0.71 -5.85 16 20 C 0.47 12.94 7.97 136.14 1.08 14.03 16 21 N -0.64 -26.16 10.32 -307.18 -3.17 -29.33 16 22 C 0.51 20.25 7.95 86.83 0.69 20.94 16 23 O -0.57 -26.80 17.46 -5.23 -0.09 -26.89 16 24 C -0.22 -5.63 5.88 -20.03 -0.12 -5.75 16 25 C -0.05 -0.92 9.67 22.42 0.22 -0.70 16 26 C -0.13 -1.04 10.02 22.29 0.22 -0.82 16 27 C -0.04 -0.11 10.02 22.32 0.22 0.12 16 28 C -0.14 -0.61 9.87 22.34 0.22 -0.39 16 29 C 0.17 2.71 6.66 38.80 0.26 2.97 16 30 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 31 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 32 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 35 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.42 4.42 7.38 -92.71 -0.68 3.74 16 38 H 0.30 -4.23 7.43 -2.91 -0.02 -4.25 16 39 H 0.13 2.81 7.81 -2.91 -0.02 2.79 16 40 H 0.17 0.30 8.06 -2.91 -0.02 0.28 16 41 H 0.19 -1.18 8.06 -2.91 -0.02 -1.20 16 42 H 0.18 -1.08 7.71 -2.91 -0.02 -1.10 16 Total: -1.00 -118.03 369.30 -0.32 -118.35 By element: Atomic # 1 Polarization: -14.41 SS G_CDS: -1.42 Total: -15.83 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 5.82 Total: 17.82 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -6.58 Total: -111.46 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -0.16 Total: -53.63 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -118.03 -0.32 -118.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264221569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.286 kcal (2) G-P(sol) polarization free energy of solvation -118.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -118.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds