Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35993 * 117.00274 * 2 1 4 4 C 1.38680 * 119.96559 * 359.97438 * 3 2 1 5 5 C 1.38482 * 119.99296 * 180.26017 * 4 3 2 6 6 O 1.35986 * 120.04217 * 179.70136 * 5 4 3 7 7 C 1.42897 * 116.99846 * 359.97438 * 6 5 4 8 8 C 1.39376 * 119.91852 * 359.42517 * 5 4 3 9 9 N 1.40003 * 120.03454 * 180.31790 * 8 5 4 10 10 C 1.34770 * 119.99585 * 145.57763 * 9 8 5 11 11 O 1.21402 * 120.00568 * 4.47543 * 10 9 8 12 12 C 1.49315 * 119.99873 * 184.47739 * 10 9 8 13 13 O 1.21366 * 119.99689 * 0.02562 * 12 10 9 14 14 N 1.34771 * 120.00320 * 179.97438 * 12 10 9 15 15 C 1.46501 * 120.00350 * 179.97438 * 14 12 10 16 16 C 1.52991 * 109.47393 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47289 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00143 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00296 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99620 * 0.02562 * 19 17 16 21 21 Si 1.86789 * 120.00010 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47431 * 60.00083 * 21 19 17 23 23 H 1.48503 * 109.47222 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47306 * 299.99920 * 21 19 17 25 25 C 1.38801 * 119.93228 * 0.57602 * 8 5 4 26 26 C 1.38293 * 120.00407 * 359.72409 * 25 8 5 27 27 F 1.35098 * 119.95611 * 180.02562 * 26 25 8 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47149 * 300.00992 * 1 2 3 30 30 H 1.09001 * 109.46661 * 60.00115 * 1 2 3 31 31 H 1.07998 * 120.00691 * 359.97438 * 4 3 2 32 32 H 1.09004 * 109.47277 * 179.97438 * 7 6 5 33 33 H 1.08996 * 109.47596 * 300.00368 * 7 6 5 34 34 H 1.09002 * 109.47355 * 59.99904 * 7 6 5 35 35 H 0.96997 * 119.99868 * 325.58140 * 9 8 5 36 36 H 0.97001 * 120.00340 * 0.02562 * 14 12 10 37 37 H 1.09002 * 109.47189 * 300.00940 * 15 14 12 38 38 H 1.09004 * 109.46744 * 60.00313 * 15 14 12 39 39 H 1.09002 * 109.47343 * 300.00384 * 16 15 14 40 40 H 1.08996 * 109.47489 * 59.99945 * 16 15 14 41 41 H 0.97001 * 119.99802 * 179.97438 * 20 19 17 42 42 H 1.07995 * 119.99577 * 179.75017 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2905 2.3743 -0.0005 5 6 1.9187 3.6085 -0.0060 6 8 1.1784 4.7491 -0.0127 7 6 -0.2428 4.6002 -0.0142 8 6 3.3106 3.6801 0.0012 9 7 3.9481 4.9265 0.0024 10 6 5.1086 5.0890 0.6681 11 8 5.6430 4.1366 1.1983 12 6 5.7373 6.4407 0.7535 13 8 5.2029 7.3930 0.2239 14 7 6.8975 6.6034 1.4196 15 6 7.5146 7.9295 1.5029 16 6 8.8129 7.8383 2.3072 17 6 9.4474 9.2025 2.3934 18 1 8.9719 10.0500 1.9221 19 6 10.6344 9.3690 3.0749 20 7 11.2131 8.3371 3.6493 21 14 11.4203 11.0601 3.1824 22 1 10.4860 11.9984 3.8547 23 1 12.6805 10.9716 3.9630 24 1 11.7196 11.5548 1.8145 25 6 4.0640 2.5144 0.0017 26 6 3.4337 1.2835 0.0008 27 9 4.1680 0.1495 0.0019 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2120 2.3173 -0.0014 32 1 -0.7114 5.5844 -0.0192 33 1 -0.5492 4.0470 -0.9020 34 1 -0.5521 4.0555 0.8779 35 1 3.5545 5.6730 -0.4757 36 1 7.3245 5.8424 1.8432 37 1 7.7344 8.2918 0.4986 38 1 6.8291 8.6189 1.9959 39 1 8.5935 7.4758 3.3115 40 1 9.4982 7.1490 1.8139 41 1 12.0484 8.4542 4.1284 42 1 5.1426 2.5687 0.0032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273141945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = -157.203103 kcal Electronic energy + Delta-G solvation = -28563.693478 eV Core-core repulsion = 24038.787887 eV Total energy + Delta-G solvation = -4524.905591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.91684 -41.40278 -40.36556 -39.30390 -38.56774 -36.96131 -35.37282 -34.44477 -32.86549 -30.52474 -30.03672 -29.73784 -28.51568 -27.05677 -25.70486 -24.11496 -22.99408 -22.32263 -21.05199 -20.30185 -19.41020 -18.79595 -17.97172 -17.54334 -16.99555 -16.70702 -16.63876 -16.17156 -16.08970 -15.87321 -15.35071 -15.31179 -15.24094 -14.92878 -14.76630 -14.50592 -14.21618 -13.92078 -13.52429 -13.38049 -13.02438 -12.84675 -12.46194 -12.32582 -12.08334 -12.06708 -11.99172 -11.46654 -11.28400 -11.24798 -11.05432 -10.69209 -10.40739 -10.20784 -9.83259 -9.49900 -9.26092 -9.06551 -8.74349 -8.42453 -7.96896 -6.10383 -4.14264 0.63554 0.73519 1.53117 2.29535 2.65140 2.70572 3.04287 3.30530 3.34885 3.36189 3.37305 3.66071 3.94841 4.18492 4.32448 4.38988 4.53005 4.61034 4.62559 4.65910 4.69444 4.85449 4.95792 5.01750 5.18038 5.26382 5.27840 5.44893 5.55034 5.92464 6.14867 6.21512 6.24261 6.53756 6.58644 6.65881 6.84301 6.93828 7.42197 7.56591 7.56676 7.80260 7.86315 8.16262 8.29016 8.91008 9.50588 11.00992 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022170 B = 0.001995 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.661592 B =14031.385178 C =15066.480531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.122 3.878 4 C -0.256 4.256 5 C 0.140 3.860 6 O -0.306 6.306 7 C 0.026 3.974 8 C 0.110 3.890 9 N -0.636 5.636 10 C 0.509 3.491 11 O -0.502 6.502 12 C 0.502 3.498 13 O -0.528 6.528 14 N -0.683 5.683 15 C 0.118 3.882 16 C 0.011 3.989 17 C -0.524 4.524 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.081 4.081 26 C 0.055 3.945 27 F -0.127 7.127 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.149 0.851 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.428 0.572 36 H 0.411 0.589 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.025 0.975 40 H 0.026 0.974 41 H 0.263 0.737 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.400 -15.176 -9.127 31.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.075 3.925 4 C -0.276 4.276 5 C 0.092 3.908 6 O -0.219 6.219 7 C -0.069 4.069 8 C 0.015 3.985 9 N -0.283 5.283 10 C 0.291 3.709 11 O -0.376 6.376 12 C 0.281 3.719 13 O -0.406 6.406 14 N -0.334 5.334 15 C -0.003 4.003 16 C -0.027 4.027 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.102 4.102 26 C 0.035 3.965 27 F -0.106 7.106 28 H 0.123 0.877 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.167 0.833 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.267 0.733 36 H 0.247 0.753 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -26.013 -15.177 -8.978 31.427 hybrid contribution 0.060 0.622 0.146 0.642 sum -25.954 -14.555 -8.832 31.039 Atomic orbital electron populations 1.23143 0.77930 1.04485 1.01438 1.86180 1.21718 1.25439 1.88409 1.18697 0.90530 0.85062 0.98205 1.20911 1.00739 0.90384 1.15539 1.18460 0.89218 0.85588 0.97506 1.86121 1.19520 1.27944 1.88331 1.23144 0.77811 1.04509 1.01394 1.16550 0.87379 0.85722 1.08821 1.42905 1.23047 1.11478 1.50914 1.20689 0.81342 0.90397 0.78447 1.90766 1.61271 1.41302 1.44249 1.19650 0.82997 0.87894 0.81398 1.90759 1.62600 1.40960 1.46244 1.46234 1.21494 1.14308 1.51329 1.21974 0.96476 0.80283 1.01568 1.19357 0.89664 0.98473 0.95165 1.20966 1.06977 0.93793 1.34572 0.92199 1.25006 0.96991 0.97097 0.95197 1.69950 1.18406 1.29911 1.34741 0.86547 0.78545 0.84038 0.78237 1.20112 1.21235 1.20106 1.21011 1.02408 0.88127 0.98664 1.16531 0.85554 0.82878 1.11569 1.91516 1.76498 1.48119 1.94468 0.87725 0.92406 0.92427 0.83348 0.87581 0.92428 0.92415 0.73316 0.75267 0.91702 0.91728 0.95628 0.95601 0.92697 0.81300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.87 10.36 -19.72 -0.20 -3.07 16 3 C 0.12 1.25 6.69 -39.17 -0.26 0.99 16 4 C -0.26 -2.12 8.02 -39.33 -0.32 -2.43 16 5 C 0.14 1.38 6.70 -39.07 -0.26 1.12 16 6 O -0.31 -2.70 10.04 -19.70 -0.20 -2.90 16 7 C 0.03 0.12 9.81 101.05 0.99 1.11 16 8 C 0.11 1.30 6.32 -83.49 -0.53 0.78 16 9 N -0.64 -7.90 5.18 -10.16 -0.05 -7.95 16 10 C 0.51 7.51 7.73 -11.65 -0.09 7.42 16 11 O -0.50 -8.08 13.89 5.45 0.08 -8.01 16 12 C 0.50 8.39 7.88 -11.65 -0.09 8.30 16 13 O -0.53 -9.72 16.48 5.48 0.09 -9.63 16 14 N -0.68 -12.08 5.55 -60.78 -0.34 -12.42 16 15 C 0.12 2.42 5.61 -4.05 -0.02 2.40 16 16 C 0.01 0.27 5.09 -27.89 -0.14 0.12 16 17 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 21 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.08 -1.01 8.67 -39.35 -0.34 -1.35 16 26 C 0.06 0.67 7.30 -39.31 -0.29 0.38 16 27 F -0.13 -1.70 17.10 2.25 0.04 -1.66 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 30 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 31 H 0.15 0.75 4.52 -52.49 -0.24 0.51 16 32 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 34 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 35 H 0.43 4.83 8.03 -40.82 -0.33 4.51 16 36 H 0.41 6.90 7.94 -40.82 -0.32 6.58 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.17 2.23 6.19 -52.49 -0.32 1.91 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -32.73 369.18 -4.96 -37.69 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.88 Total: 4.56 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -0.77 Total: 6.90 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.35 Total: -45.61 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.24 Total: -23.61 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.73 -4.96 -37.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273141945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.516 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds