Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35995 * 117.00123 * 2 1 4 4 C 1.38677 * 119.96562 * 0.02562 * 3 2 1 5 5 C 1.38484 * 119.99130 * 180.02562 * 4 3 2 6 6 O 1.35995 * 120.03940 * 179.97438 * 5 4 3 7 7 C 1.42902 * 116.99953 * 0.02562 * 6 5 4 8 8 C 1.39366 * 119.92305 * 359.97438 * 5 4 3 9 9 N 1.39997 * 120.03413 * 179.97438 * 8 5 4 10 10 C 1.34779 * 119.99751 * 155.45250 * 9 8 5 11 11 O 1.21400 * 120.00433 * 354.46536 * 10 9 8 12 12 C 1.49318 * 119.99702 * 174.47254 * 10 9 8 13 13 O 1.21358 * 120.00088 * 359.97438 * 12 10 9 14 14 N 1.34775 * 119.99789 * 179.97438 * 12 10 9 15 15 C 1.46496 * 120.00021 * 179.97438 * 14 12 10 16 16 H 1.09002 * 109.47039 * 35.00395 * 15 14 12 17 17 C 1.52998 * 109.47259 * 274.99986 * 15 14 12 18 18 C 1.50701 * 109.47168 * 155.00041 * 15 14 12 19 19 H 1.08001 * 120.00242 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00299 * 179.97438 * 18 15 14 21 21 N 1.31517 * 119.99937 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00147 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46922 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47018 * 299.99818 * 22 20 18 25 25 H 1.48491 * 109.47211 * 60.00249 * 22 20 18 26 26 C 1.38792 * 119.93208 * 0.25926 * 8 5 4 27 27 C 1.38292 * 120.00454 * 359.46669 * 26 8 5 28 28 F 1.35105 * 119.96168 * 180.29703 * 27 26 8 29 29 H 1.09003 * 109.47443 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47162 * 299.99526 * 1 2 3 31 31 H 1.08999 * 109.47463 * 59.99742 * 1 2 3 32 32 H 1.07996 * 120.00384 * 359.97438 * 4 3 2 33 33 H 1.09002 * 109.46895 * 300.00008 * 7 6 5 34 34 H 1.08999 * 109.47534 * 59.99487 * 7 6 5 35 35 H 1.09001 * 109.47476 * 180.02562 * 7 6 5 36 36 H 0.96997 * 120.00360 * 335.44917 * 9 8 5 37 37 H 0.97006 * 120.00080 * 0.02562 * 14 12 10 38 38 H 1.08989 * 109.47504 * 300.00406 * 17 15 14 39 39 H 1.09007 * 109.46838 * 60.00424 * 17 15 14 40 40 H 1.09001 * 109.46954 * 179.97438 * 17 15 14 41 41 H 0.96995 * 120.00396 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.00066 * 179.72096 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2904 2.3743 0.0005 5 6 1.9186 3.6085 0.0000 6 8 1.1782 4.7492 0.0000 7 6 -0.2430 4.6002 0.0011 8 6 3.3104 3.6801 -0.0005 9 7 3.9479 4.9266 -0.0016 10 6 5.2001 5.0434 0.4828 11 8 5.7379 4.0919 1.0113 12 6 5.9261 6.3433 0.3696 13 8 5.3888 7.2944 -0.1590 14 7 7.1782 6.4603 0.8544 15 6 7.8907 7.7354 0.7429 16 1 7.1832 8.5576 0.8502 17 6 8.5698 7.8222 -0.6254 18 6 8.9331 7.8249 1.8275 19 1 9.0532 7.0130 2.5295 20 6 9.7343 8.9429 1.9232 21 7 9.5885 9.9315 1.0681 22 14 11.0268 9.0536 3.2672 23 1 11.7491 10.3463 3.1542 24 1 10.3682 8.9696 4.5955 25 1 11.9904 7.9333 3.1208 26 6 4.0639 2.5146 -0.0060 27 6 3.4336 1.2836 0.0003 28 9 4.1679 0.1496 0.0011 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2120 2.3172 0.0005 33 1 -0.5514 4.0508 -0.8884 34 1 -0.5502 4.0517 0.8915 35 1 -0.7116 5.5844 0.0006 36 1 3.4883 5.7061 -0.3510 37 1 7.6079 5.6999 1.2766 38 1 9.2772 7.0001 -0.7328 39 1 7.8158 7.7575 -1.4099 40 1 9.0995 8.7712 -0.7085 41 1 10.1519 10.7182 1.1355 42 1 5.1425 2.5688 -0.0110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275963792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -150.006827 kcal Electronic energy + Delta-G solvation = -29187.934773 eV Core-core repulsion = 24663.341236 eV Total energy + Delta-G solvation = -4524.593537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.82698 -41.27737 -40.16704 -39.18894 -38.31322 -36.80007 -35.24832 -34.35006 -32.41828 -30.40649 -29.85956 -29.12109 -28.42995 -26.89979 -25.34768 -24.74735 -22.99893 -22.40775 -20.84341 -19.71422 -19.30843 -18.78713 -17.90459 -17.47453 -16.92320 -16.63126 -16.33771 -16.02616 -15.91913 -15.49943 -15.30747 -15.21701 -15.15165 -15.01570 -14.55003 -14.24069 -13.78979 -13.61549 -13.29220 -13.14966 -12.80557 -12.48624 -12.37699 -12.01175 -11.97241 -11.90492 -11.79688 -11.26246 -11.20359 -11.08809 -10.99863 -10.79587 -10.37616 -10.27375 -10.12085 -9.17697 -9.12243 -8.90894 -8.62452 -8.14782 -7.78837 -6.17339 -4.27027 0.75948 0.84051 1.81661 2.52121 2.75210 2.82337 3.19466 3.25971 3.30572 3.33012 3.68322 3.90379 4.09927 4.27601 4.33705 4.42171 4.61365 4.69484 4.73978 4.78014 4.89628 5.02156 5.08063 5.10730 5.15741 5.31885 5.38929 5.55532 5.63774 6.05685 6.38239 6.68512 6.71707 6.84039 6.96719 7.01747 7.07435 7.20634 7.39078 7.61345 7.75991 7.86985 8.04751 8.42074 8.59895 8.84185 9.39942 10.88642 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.002368 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.323432 B =11819.627054 C =12663.090021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.114 3.886 4 C -0.251 4.251 5 C 0.132 3.868 6 O -0.308 6.308 7 C 0.027 3.973 8 C 0.121 3.879 9 N -0.636 5.636 10 C 0.507 3.493 11 O -0.506 6.506 12 C 0.496 3.504 13 O -0.533 6.533 14 N -0.667 5.667 15 C 0.262 3.738 16 H 0.055 0.945 17 C -0.149 4.149 18 C -0.537 4.537 19 H 0.064 0.936 20 C 0.068 3.932 21 N -0.883 5.883 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.095 4.095 27 C 0.059 3.941 28 F -0.128 7.128 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.148 0.852 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.429 0.571 37 H 0.403 0.597 38 H 0.030 0.970 39 H 0.017 0.983 40 H 0.095 0.905 41 H 0.266 0.734 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.343 -15.646 -3.775 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.067 3.933 4 C -0.271 4.271 5 C 0.084 3.916 6 O -0.221 6.221 7 C -0.067 4.067 8 C 0.025 3.975 9 N -0.282 5.282 10 C 0.290 3.710 11 O -0.380 6.380 12 C 0.274 3.726 13 O -0.411 6.411 14 N -0.316 5.316 15 C 0.161 3.839 16 H 0.072 0.928 17 C -0.207 4.207 18 C -0.575 4.575 19 H 0.082 0.918 20 C -0.136 4.136 21 N -0.521 5.521 22 Si 0.732 3.268 23 H -0.211 1.211 24 H -0.201 1.201 25 H -0.200 1.200 26 C -0.115 4.115 27 C 0.039 3.961 28 F -0.107 7.107 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.166 0.834 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.268 0.732 37 H 0.237 0.763 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.113 0.887 41 H 0.076 0.924 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -21.003 -15.386 -3.820 26.314 hybrid contribution 0.200 -0.137 0.739 0.778 sum -20.802 -15.523 -3.081 26.138 Atomic orbital electron populations 1.23119 0.78090 1.04354 1.01379 1.86169 1.21584 1.25505 1.88614 1.18665 0.90510 0.85011 0.99106 1.20881 1.00634 0.90373 1.15238 1.18364 0.89100 0.85601 0.98538 1.86104 1.19477 1.27980 1.88525 1.23125 0.77872 1.04434 1.01317 1.16644 0.87514 0.85947 1.07384 1.43026 1.15270 1.09684 1.60264 1.21023 0.81781 0.90357 0.77790 1.90697 1.66679 1.39975 1.40632 1.19568 0.83948 0.87127 0.81911 1.90739 1.67370 1.38957 1.44066 1.46507 1.12862 1.17461 1.54756 1.18985 0.91180 0.79328 0.94391 0.92754 1.22103 0.99083 1.03396 0.96160 1.21153 1.18336 1.04217 1.13830 0.91765 1.24876 0.97220 0.95202 0.96286 1.69879 1.39451 1.07078 1.35643 0.86445 0.81137 0.77409 0.81776 1.21102 1.20093 1.20028 1.21124 1.02803 0.88022 0.99598 1.16538 0.85504 0.82849 1.11244 1.91509 1.76556 1.48164 1.94461 0.87834 0.92486 0.92496 0.83435 0.92495 0.92482 0.87633 0.73193 0.76266 0.95054 0.96434 0.88701 0.92388 0.80820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.14 10.36 -19.72 -0.20 -3.34 16 3 C 0.11 1.29 6.69 -39.17 -0.26 1.02 16 4 C -0.25 -2.34 8.02 -39.33 -0.32 -2.66 16 5 C 0.13 1.46 6.70 -39.07 -0.26 1.20 16 6 O -0.31 -3.06 9.90 -19.72 -0.20 -3.26 16 7 C 0.03 0.15 9.81 101.05 0.99 1.14 16 8 C 0.12 1.61 6.45 -83.50 -0.54 1.08 16 9 N -0.64 -9.16 5.27 -10.16 -0.05 -9.21 16 10 C 0.51 8.61 7.69 -11.65 -0.09 8.52 16 11 O -0.51 -9.02 13.64 5.45 0.07 -8.95 16 12 C 0.50 9.88 7.85 -11.65 -0.09 9.79 16 13 O -0.53 -11.69 16.15 5.49 0.09 -11.60 16 14 N -0.67 -14.17 5.06 -55.41 -0.28 -14.45 16 15 C 0.26 6.54 2.56 -69.09 -0.18 6.36 16 16 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 17 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 18 C -0.54 -14.10 8.73 -34.44 -0.30 -14.40 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 21 N -0.88 -24.34 11.32 55.43 0.63 -23.71 16 22 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C -0.09 -1.31 8.69 -39.36 -0.34 -1.65 16 27 C 0.06 0.79 7.30 -39.31 -0.29 0.50 16 28 F -0.13 -1.83 17.10 2.25 0.04 -1.79 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 32 H 0.15 0.89 4.52 -52.49 -0.24 0.65 16 33 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 34 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 35 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.43 5.80 7.81 -40.82 -0.32 5.48 16 37 H 0.40 7.95 8.01 -40.82 -0.33 7.62 16 38 H 0.03 0.71 8.14 -51.94 -0.42 0.29 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 41 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.17 2.59 5.78 -52.49 -0.30 2.29 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -31.14 363.55 -4.60 -35.74 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -4.72 Total: 9.12 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -0.43 Total: 10.47 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.29 Total: -47.37 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.24 Total: -27.15 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.14 -4.60 -35.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275963792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.269 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds