Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35995 * 117.00123 * 2 1 4 4 C 1.38677 * 119.96562 * 0.02562 * 3 2 1 5 5 C 1.38484 * 119.99130 * 180.02562 * 4 3 2 6 6 O 1.35995 * 120.03940 * 179.97438 * 5 4 3 7 7 C 1.42902 * 116.99953 * 0.02562 * 6 5 4 8 8 C 1.39366 * 119.92305 * 359.97438 * 5 4 3 9 9 N 1.39997 * 120.03413 * 179.97438 * 8 5 4 10 10 C 1.34779 * 119.99751 * 155.45250 * 9 8 5 11 11 O 1.21400 * 120.00433 * 354.46536 * 10 9 8 12 12 C 1.49318 * 119.99702 * 174.47254 * 10 9 8 13 13 O 1.21358 * 120.00088 * 359.97438 * 12 10 9 14 14 N 1.34775 * 119.99789 * 179.97438 * 12 10 9 15 15 C 1.46496 * 120.00021 * 179.97438 * 14 12 10 16 16 H 1.09002 * 109.47039 * 35.00395 * 15 14 12 17 17 C 1.52998 * 109.47259 * 274.99986 * 15 14 12 18 18 C 1.50701 * 109.47168 * 155.00041 * 15 14 12 19 19 H 1.08001 * 120.00242 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00299 * 179.97438 * 18 15 14 21 21 N 1.31517 * 119.99937 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00147 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46922 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47018 * 299.99818 * 22 20 18 25 25 H 1.48491 * 109.47211 * 60.00249 * 22 20 18 26 26 C 1.38792 * 119.93208 * 0.25926 * 8 5 4 27 27 C 1.38292 * 120.00454 * 359.46669 * 26 8 5 28 28 F 1.35105 * 119.96168 * 180.29703 * 27 26 8 29 29 H 1.09003 * 109.47443 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47162 * 299.99526 * 1 2 3 31 31 H 1.08999 * 109.47463 * 59.99742 * 1 2 3 32 32 H 1.07996 * 120.00384 * 359.97438 * 4 3 2 33 33 H 1.09002 * 109.46895 * 300.00008 * 7 6 5 34 34 H 1.08999 * 109.47534 * 59.99487 * 7 6 5 35 35 H 1.09001 * 109.47476 * 180.02562 * 7 6 5 36 36 H 0.96997 * 120.00360 * 335.44917 * 9 8 5 37 37 H 0.97006 * 120.00080 * 0.02562 * 14 12 10 38 38 H 1.08989 * 109.47504 * 300.00406 * 17 15 14 39 39 H 1.09007 * 109.46838 * 60.00424 * 17 15 14 40 40 H 1.09001 * 109.46954 * 179.97438 * 17 15 14 41 41 H 0.96995 * 120.00396 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.00066 * 179.72096 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2904 2.3743 0.0005 5 6 1.9186 3.6085 0.0000 6 8 1.1782 4.7492 0.0000 7 6 -0.2430 4.6002 0.0011 8 6 3.3104 3.6801 -0.0005 9 7 3.9479 4.9266 -0.0016 10 6 5.2001 5.0434 0.4828 11 8 5.7379 4.0919 1.0113 12 6 5.9261 6.3433 0.3696 13 8 5.3888 7.2944 -0.1590 14 7 7.1782 6.4603 0.8544 15 6 7.8907 7.7354 0.7429 16 1 7.1832 8.5576 0.8502 17 6 8.5698 7.8222 -0.6254 18 6 8.9331 7.8249 1.8275 19 1 9.0532 7.0130 2.5295 20 6 9.7343 8.9429 1.9232 21 7 9.5885 9.9315 1.0681 22 14 11.0268 9.0536 3.2672 23 1 11.7491 10.3463 3.1542 24 1 10.3682 8.9696 4.5955 25 1 11.9904 7.9333 3.1208 26 6 4.0639 2.5146 -0.0060 27 6 3.4336 1.2836 0.0003 28 9 4.1679 0.1496 0.0011 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2120 2.3172 0.0005 33 1 -0.5514 4.0508 -0.8884 34 1 -0.5502 4.0517 0.8915 35 1 -0.7116 5.5844 0.0006 36 1 3.4883 5.7061 -0.3510 37 1 7.6079 5.6999 1.2766 38 1 9.2772 7.0001 -0.7328 39 1 7.8158 7.7575 -1.4099 40 1 9.0995 8.7712 -0.7085 41 1 10.1519 10.7182 1.1355 42 1 5.1425 2.5688 -0.0110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275963792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -173.042516 kcal Electronic energy + Delta-G solvation = -29188.933675 eV Core-core repulsion = 24663.341236 eV Total energy + Delta-G solvation = -4525.592439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.84697 -42.36176 -41.32801 -40.02904 -39.70858 -37.79571 -36.98839 -35.60678 -34.32536 -31.34068 -31.09209 -30.59944 -28.93718 -27.59205 -27.35984 -26.08376 -23.98827 -23.47786 -22.41619 -21.30498 -20.41776 -19.87686 -19.01645 -18.52660 -18.02124 -17.79163 -17.50261 -17.36905 -16.98582 -16.88329 -16.56059 -16.35700 -16.07030 -15.86524 -15.76635 -15.55803 -15.05791 -15.00818 -14.50950 -14.42180 -14.04947 -13.75703 -13.57945 -13.27774 -13.06642 -12.90464 -12.78618 -12.60217 -12.56288 -12.45836 -12.42179 -12.28524 -12.13607 -12.06037 -11.16811 -11.06169 -10.68599 -10.59123 -9.99226 -9.83312 -8.73950 -8.19637 -6.36897 -0.26900 -0.06335 0.47191 1.20958 1.46903 1.47981 1.56130 2.01971 2.07213 2.11806 2.38687 2.39048 2.64259 3.10951 3.14469 3.40642 3.51015 3.69955 3.97339 4.24084 4.34540 4.39141 4.41912 4.42480 4.45373 4.68247 4.69039 4.70478 4.78125 4.83888 4.89048 4.98275 5.01967 5.30253 5.39615 5.43070 5.59312 5.74611 5.92016 6.01062 6.03740 6.24838 6.48312 6.64407 6.74393 7.05601 7.35062 8.86296 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.002368 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.323432 B =11819.627054 C =12663.090021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.324 6.324 3 C 0.128 3.872 4 C -0.238 4.238 5 C 0.148 3.852 6 O -0.323 6.323 7 C 0.012 3.988 8 C 0.090 3.910 9 N -0.620 5.620 10 C 0.516 3.484 11 O -0.517 6.517 12 C 0.498 3.502 13 O -0.555 6.555 14 N -0.669 5.669 15 C 0.268 3.732 16 H 0.016 0.984 17 C -0.137 4.137 18 C -0.553 4.553 19 H 0.070 0.930 20 C 0.020 3.980 21 N -0.912 5.912 22 Si 0.972 3.028 23 H -0.283 1.283 24 H -0.272 1.272 25 H -0.267 1.267 26 C -0.100 4.100 27 C 0.030 3.970 28 F -0.141 7.141 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.188 0.812 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.433 0.567 37 H 0.411 0.589 38 H 0.040 0.960 39 H 0.021 0.979 40 H 0.074 0.926 41 H 0.268 0.732 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.739 -16.930 -3.306 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.238 6.238 3 C 0.080 3.920 4 C -0.257 4.257 5 C 0.099 3.901 6 O -0.236 6.236 7 C -0.081 4.081 8 C -0.005 4.005 9 N -0.267 5.267 10 C 0.298 3.702 11 O -0.393 6.393 12 C 0.278 3.722 13 O -0.435 6.435 14 N -0.319 5.319 15 C 0.166 3.834 16 H 0.034 0.966 17 C -0.195 4.195 18 C -0.591 4.591 19 H 0.088 0.912 20 C -0.181 4.181 21 N -0.550 5.550 22 Si 0.796 3.204 23 H -0.208 1.208 24 H -0.197 1.197 25 H -0.192 1.192 26 C -0.121 4.121 27 C 0.010 3.990 28 F -0.120 7.120 29 H 0.140 0.860 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.205 0.795 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.273 0.727 37 H 0.247 0.753 38 H 0.059 0.941 39 H 0.040 0.960 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -23.458 -16.708 -3.361 28.996 hybrid contribution 0.682 0.204 0.543 0.896 sum -22.776 -16.504 -2.818 28.268 Atomic orbital electron populations 1.23548 0.75288 1.06359 1.03089 1.86170 1.24485 1.25014 1.88093 1.18717 0.89843 0.86169 0.97271 1.21184 1.02335 0.88697 1.13510 1.18370 0.88297 0.86717 0.96672 1.86113 1.21887 1.27628 1.87991 1.23539 0.75257 1.06220 1.03104 1.16751 0.88713 0.84845 1.10166 1.42811 1.14142 1.10553 1.59170 1.20245 0.82624 0.88694 0.78594 1.90707 1.67222 1.39709 1.41653 1.20008 0.83444 0.88090 0.80703 1.90717 1.67755 1.40229 1.44754 1.46264 1.13527 1.16554 1.55537 1.18630 0.90353 0.79787 0.94624 0.96593 1.21933 0.99041 1.02561 0.96014 1.21456 1.18691 1.04644 1.14331 0.91174 1.25722 0.99173 0.94792 0.98392 1.70007 1.40310 1.07548 1.37105 0.85402 0.78550 0.77549 0.78882 1.20816 1.19695 1.19159 1.20934 1.02104 0.88808 1.00223 1.16710 0.86676 0.82230 1.13407 1.91463 1.77086 1.48688 1.94789 0.85979 0.90804 0.90573 0.79480 0.90423 0.90824 0.86154 0.72734 0.75346 0.94136 0.96032 0.90734 0.92291 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -5.87 10.36 -93.49 -0.97 -6.84 16 3 C 0.13 2.63 6.69 22.54 0.15 2.78 16 4 C -0.24 -3.66 8.02 22.43 0.18 -3.48 16 5 C 0.15 2.97 6.70 22.60 0.15 3.12 16 6 O -0.32 -5.58 9.90 -93.49 -0.93 -6.50 16 7 C 0.01 0.09 9.81 113.37 1.11 1.20 16 8 C 0.09 2.37 6.45 38.24 0.25 2.61 16 9 N -0.62 -17.93 5.27 -304.41 -1.61 -19.53 16 10 C 0.52 17.86 7.69 87.23 0.67 18.53 16 11 O -0.52 -18.90 13.64 -3.40 -0.05 -18.94 16 12 C 0.50 20.31 7.85 87.23 0.68 20.99 16 13 O -0.55 -25.00 16.15 -3.27 -0.05 -25.05 16 14 N -0.67 -29.14 5.06 -447.58 -2.27 -31.40 16 15 C 0.27 13.78 2.56 44.25 0.11 13.89 16 16 H 0.02 0.95 7.58 -2.39 -0.02 0.93 16 17 C -0.14 -6.78 9.26 71.98 0.67 -6.11 16 18 C -0.55 -29.39 8.73 25.60 0.22 -29.16 16 19 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 20 C 0.02 1.07 5.30 84.65 0.45 1.52 16 21 N -0.91 -51.10 11.32 21.45 0.24 -50.85 16 22 Si 0.97 42.02 29.54 68.60 2.03 44.05 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 C -0.10 -2.81 8.69 22.42 0.19 -2.62 16 27 C 0.03 0.80 7.30 22.44 0.16 0.97 16 28 F -0.14 -4.14 17.10 44.97 0.77 -3.38 16 29 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.27 7.66 -2.39 -0.02 0.25 16 31 H 0.08 0.24 7.66 -2.39 -0.02 0.22 16 32 H 0.19 1.27 4.52 -2.91 -0.01 1.26 16 33 H 0.08 0.25 7.66 -2.39 -0.02 0.24 16 34 H 0.07 0.30 7.66 -2.39 -0.02 0.29 16 35 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.43 11.66 7.81 -92.71 -0.72 10.93 16 37 H 0.41 16.51 8.01 -92.70 -0.74 15.77 16 38 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.07 4.01 6.07 -2.39 -0.01 3.99 16 41 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 42 H 0.16 4.89 5.78 -2.91 -0.02 4.87 16 Total: -1.00 -69.11 363.55 2.94 -66.17 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -0.35 Total: 26.87 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: 6.12 Total: 25.42 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -3.63 Total: -101.79 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -1.99 Total: -57.34 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.77 Total: -3.38 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -69.11 2.94 -66.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275963792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.874 kcal (2) G-P(sol) polarization free energy of solvation -69.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds