Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99638 * 2 1 4 4 H 1.48502 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47200 * 299.99812 * 3 2 1 6 6 H 1.48504 * 109.47035 * 60.00319 * 3 2 1 7 7 C 1.37879 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99604 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00265 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47320 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47320 * 179.97438 * 10 9 7 12 12 N 1.31126 * 126.55484 * 90.01431 * 11 10 9 13 13 C 1.34492 * 105.61910 * 179.97438 * 12 11 10 14 14 C 1.50703 * 126.29014 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47227 * 270.05374 * 14 13 12 16 16 N 1.46506 * 109.46937 * 179.97438 * 15 14 13 17 17 C 1.35851 * 119.69593 * 269.72151 * 16 15 14 18 18 N 1.29838 * 123.36204 * 179.72683 * 17 16 15 19 19 C 1.35658 * 121.61798 * 0.55811 * 18 17 16 20 20 C 1.39639 * 121.64611 * 179.73325 * 19 18 17 21 21 C 1.37662 * 119.68442 * 180.02562 * 20 19 18 22 22 C 1.38884 * 120.82188 * 359.97438 * 21 20 19 23 23 C 1.37758 * 120.56937 * 359.97438 * 22 21 20 24 24 C 1.39342 * 119.51861 * 0.02562 * 23 22 21 25 25 C 1.35342 * 119.69513 * 90.00346 * 16 15 14 26 26 O 1.21732 * 121.29924 * 359.97438 * 25 16 15 27 27 N 1.29948 * 107.42516 * 0.02562 * 13 12 11 28 28 O 1.21303 * 110.24669 * 359.97438 * 27 13 12 29 29 H 0.96993 * 119.99993 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47345 * 59.99406 * 9 7 2 31 31 H 1.08999 * 109.47183 * 299.99698 * 9 7 2 32 32 H 1.08995 * 109.46779 * 59.99714 * 10 9 7 33 33 H 1.08999 * 109.46926 * 300.00075 * 10 9 7 34 34 H 1.09002 * 109.46770 * 30.05485 * 14 13 12 35 35 H 1.08999 * 109.47188 * 150.05087 * 14 13 12 36 36 H 1.08998 * 109.46899 * 299.99608 * 15 14 13 37 37 H 1.08999 * 109.47270 * 59.99764 * 15 14 13 38 38 H 1.07997 * 118.32340 * 0.02562 * 17 16 15 39 39 H 1.08003 * 120.15765 * 0.02562 * 20 19 18 40 40 H 1.08000 * 119.59009 * 180.02562 * 21 20 19 41 41 H 1.08004 * 119.71918 * 179.97438 * 22 21 20 42 42 H 1.08005 * 120.24489 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4920 -4.9671 0.0012 12 7 1.1014 -5.6439 -1.0518 13 6 0.4739 -6.7319 -0.5707 14 6 -0.1600 -7.8294 -1.3860 15 6 -1.6236 -7.4793 -1.6622 16 7 -2.2396 -8.5461 -2.4553 17 6 -2.2079 -8.4801 -3.8118 18 7 -2.7261 -9.3870 -4.5830 19 6 -3.3555 -10.4766 -4.0762 20 6 -3.9178 -11.4496 -4.9051 21 6 -4.5478 -12.5391 -4.3473 22 6 -4.6313 -12.6841 -2.9686 23 6 -4.0834 -11.7383 -2.1302 24 6 -3.4413 -10.6278 -2.6745 25 6 -2.8399 -9.5853 -1.8297 26 8 -2.8797 -9.6547 -0.6150 27 7 0.5136 -6.6623 0.7263 28 8 1.0943 -5.6561 1.0751 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 2.8720 -3.6043 0.8905 33 1 2.8720 -3.6043 -0.8894 34 1 0.3731 -7.9343 -2.3309 35 1 -0.1089 -8.7679 -0.8340 36 1 -2.1566 -7.3745 -0.7172 37 1 -1.6747 -6.5408 -2.2142 38 1 -1.7228 -7.6322 -4.2724 39 1 -3.8588 -11.3477 -5.9787 40 1 -4.9818 -13.2909 -4.9899 41 1 -5.1300 -13.5459 -2.5501 42 1 -4.1510 -11.8565 -1.0587 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291081594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = 53.307403 kcal Electronic energy + Delta-G solvation = -27289.092144 eV Core-core repulsion = 23236.376950 eV Total energy + Delta-G solvation = -4052.715194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.62672 -42.74625 -39.71847 -38.71539 -37.42632 -36.53180 -35.64884 -34.44650 -32.81069 -32.18609 -31.31059 -30.99829 -27.73554 -26.86414 -25.84407 -24.89095 -24.34009 -23.41141 -23.00026 -21.85839 -19.98140 -19.79048 -19.25616 -18.63018 -18.44409 -18.13364 -17.25209 -16.66152 -16.48344 -16.12767 -16.02327 -15.98620 -15.39826 -15.20596 -14.97050 -14.87362 -14.71764 -14.46040 -14.39177 -14.24802 -13.61669 -13.36619 -13.24835 -12.98192 -12.85169 -12.78308 -12.69649 -12.52440 -12.40633 -12.11044 -11.90071 -11.85396 -11.48240 -11.30266 -11.20223 -11.06490 -10.78522 -10.55579 -10.20655 -9.16614 -8.18948 -6.30115 -0.52504 -0.25692 0.09146 1.01635 1.06348 1.29686 1.46663 1.48117 1.60375 1.72972 1.85787 2.44593 2.58740 2.89642 2.94724 3.00737 3.17044 3.17932 3.62611 3.64519 3.65712 3.73180 3.97884 4.01094 4.18957 4.23355 4.29294 4.37567 4.45164 4.53810 4.55769 4.60948 4.74896 4.87815 4.89233 4.98769 5.03708 5.10512 5.23564 5.37659 5.46805 5.47908 5.56600 5.78407 5.80092 6.15693 6.45278 6.76994 6.86073 7.10015 7.40047 8.93434 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.001870 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.851713 B =14972.005158 C =15563.767535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.254 1.254 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.033 3.967 10 C -0.015 4.015 11 C 0.211 3.789 12 N -0.497 5.497 13 C 0.171 3.829 14 C -0.029 4.029 15 C 0.108 3.892 16 N -0.540 5.540 17 C 0.381 3.619 18 N -0.535 5.535 19 C 0.134 3.866 20 C -0.118 4.118 21 C -0.063 4.063 22 C -0.132 4.132 23 C -0.061 4.061 24 C -0.222 4.222 25 C 0.535 3.465 26 O -0.547 6.547 27 N -0.409 5.409 28 O 0.062 5.938 29 H 0.263 0.737 30 H -0.001 1.001 31 H -0.004 1.004 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.130 0.870 38 H 0.244 0.756 39 H 0.156 0.844 40 H 0.172 0.828 41 H 0.162 0.838 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 -24.307 -11.414 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.178 1.178 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.574 4.574 8 H 0.096 0.904 9 C -0.005 4.005 10 C -0.054 4.054 11 C -0.008 4.008 12 N -0.231 5.231 13 C -0.103 4.103 14 C -0.069 4.069 15 C -0.016 4.016 16 N -0.261 5.261 17 C 0.095 3.905 18 N -0.254 5.254 19 C 0.025 3.975 20 C -0.137 4.137 21 C -0.082 4.082 22 C -0.151 4.151 23 C -0.080 4.080 24 C -0.227 4.227 25 C 0.329 3.671 26 O -0.424 6.424 27 N -0.121 5.121 28 O 0.007 5.993 29 H 0.072 0.928 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.148 0.852 38 H 0.260 0.740 39 H 0.173 0.827 40 H 0.189 0.811 41 H 0.179 0.821 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.472 -25.060 -11.409 28.285 hybrid contribution 0.078 1.211 1.444 1.887 sum -6.394 -23.848 -9.965 26.626 Atomic orbital electron populations 1.70110 1.07982 1.27802 1.51536 1.25967 0.95659 1.03483 0.94693 0.85358 0.79450 0.78635 0.77351 1.17796 1.20859 1.21000 1.21603 0.94189 0.91011 1.50593 0.90379 1.18956 0.93992 0.91764 0.95802 1.20541 0.96756 0.81655 1.06440 1.29578 0.94230 0.97132 0.79904 1.71929 1.16745 1.05393 1.29021 1.25871 0.99342 0.96801 0.88270 1.20226 0.94290 0.92257 1.00129 1.21823 0.91722 0.90072 0.97967 1.46642 1.48761 1.21976 1.08769 1.25703 0.89543 0.97414 0.77868 1.68734 1.17396 1.04174 1.35088 1.19169 0.95148 0.93448 0.89763 1.21213 0.98596 0.93022 1.00865 1.21766 0.94385 0.96691 0.95315 1.21577 1.00173 0.99654 0.93648 1.21191 0.93948 0.91830 1.01064 1.20700 1.08844 0.99160 0.94033 1.18893 0.78139 0.82202 0.87817 1.90868 1.59697 1.77389 1.14460 1.74625 1.16464 1.04347 1.16661 1.85290 1.52434 1.25090 1.36461 0.92831 0.98243 0.98553 0.86877 0.86414 0.85187 0.89346 0.90155 0.85179 0.73988 0.82659 0.81100 0.82052 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.49 13.29 21.45 0.28 -54.20 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 41.64 29.54 68.60 2.03 43.66 16 4 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.54 -27.54 9.11 25.60 0.23 -27.31 16 8 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.03 1.59 4.95 29.85 0.15 1.74 16 10 C -0.02 -0.53 5.78 29.85 0.17 -0.36 16 11 C 0.21 7.44 7.77 88.38 0.69 8.13 16 12 N -0.50 -16.66 11.55 -303.21 -3.50 -20.16 16 13 C 0.17 5.26 7.47 138.46 1.03 6.29 16 14 C -0.03 -0.65 6.17 29.85 0.18 -0.47 16 15 C 0.11 2.24 5.35 86.38 0.46 2.71 16 16 N -0.54 -10.90 2.61 -647.84 -1.69 -12.59 16 17 C 0.38 5.80 11.41 180.19 2.06 7.85 16 18 N -0.53 -9.95 10.37 -191.93 -1.99 -11.94 16 19 C 0.13 2.66 6.63 39.63 0.26 2.92 16 20 C -0.12 -1.66 10.03 22.47 0.23 -1.44 16 21 C -0.06 -0.62 10.00 22.29 0.22 -0.39 16 22 C -0.13 -1.59 10.02 22.31 0.22 -1.36 16 23 C -0.06 -1.16 9.68 22.42 0.22 -0.95 16 24 C -0.22 -5.06 5.89 -19.96 -0.12 -5.18 16 25 C 0.53 14.06 7.66 86.46 0.66 14.73 16 26 O -0.55 -18.11 16.32 -4.45 -0.07 -18.18 16 27 N -0.41 -14.48 12.16 -60.31 -0.73 -15.22 16 28 O 0.06 2.24 11.31 74.83 0.85 3.09 16 29 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.11 3.51 8.14 -2.39 -0.02 3.50 16 33 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 34 H 0.13 2.13 8.14 -2.39 -0.02 2.12 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.08 2.12 7.46 -2.39 -0.02 2.10 16 37 H 0.13 2.14 7.99 -2.39 -0.02 2.12 16 38 H 0.24 1.51 7.98 -2.91 -0.02 1.49 16 39 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 41 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 42 H 0.13 2.55 7.83 -2.91 -0.02 2.53 16 Total: -1.00 -74.12 372.17 3.36 -70.76 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.06 Total: 7.42 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 7.13 Total: 7.36 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -7.63 Total: -114.11 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.77 Total: -15.09 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -74.12 3.36 -70.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291081594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.063 kcal (2) G-P(sol) polarization free energy of solvation -74.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds