Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99941 * 2 1 4 4 C 1.52998 * 109.46754 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47368 * 65.00388 * 4 3 2 6 6 C 1.46500 * 119.99754 * 269.99817 * 5 4 3 7 7 C 1.50698 * 109.47351 * 269.99922 * 6 5 4 8 8 H 1.08010 * 119.99741 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00523 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99779 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00192 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47571 * 89.99489 * 11 9 7 13 13 H 1.48503 * 109.46831 * 209.99758 * 11 9 7 14 14 H 1.48498 * 109.47193 * 329.99271 * 11 9 7 15 15 C 1.34775 * 120.00497 * 89.99540 * 5 4 3 16 16 O 1.21593 * 120.00101 * 180.02562 * 15 5 4 17 17 N 1.34781 * 119.99662 * 0.02562 * 15 5 4 18 18 C 1.40104 * 119.99809 * 184.45179 * 17 15 5 19 19 C 1.38444 * 120.00531 * 325.31466 * 18 17 15 20 20 C 1.39641 * 119.80087 * 179.97438 * 19 18 17 21 21 C 1.47608 * 120.09260 * 179.97438 * 20 19 18 22 22 O 1.21484 * 120.00190 * 359.97438 * 21 20 19 23 23 O 1.34731 * 119.99867 * 179.97438 * 21 20 19 24 24 C 1.39714 * 119.80934 * 359.97438 * 20 19 18 25 25 C 1.37886 * 120.00058 * 0.02562 * 24 20 19 26 26 C 1.38508 * 120.20821 * 0.02562 * 25 24 20 27 27 F 1.35100 * 119.90788 * 180.27671 * 26 25 24 28 28 H 1.09003 * 109.47587 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47096 * 299.99765 * 1 2 3 30 30 H 1.09003 * 109.47508 * 59.99891 * 1 2 3 31 31 H 1.09000 * 109.46999 * 60.00336 * 3 2 1 32 32 H 1.09001 * 109.47051 * 300.00250 * 3 2 1 33 33 H 1.08994 * 109.47513 * 304.99945 * 4 3 2 34 34 H 1.09002 * 109.46749 * 185.00024 * 4 3 2 35 35 H 1.09002 * 109.47550 * 29.99770 * 6 5 4 36 36 H 1.08997 * 109.47297 * 149.99724 * 6 5 4 37 37 H 0.97001 * 120.00412 * 180.02562 * 10 9 7 38 38 H 0.96994 * 119.99889 * 4.44748 * 17 15 5 39 39 H 1.08003 * 120.09843 * 359.95242 * 19 18 17 40 40 H 0.96699 * 117.00196 * 179.97438 * 23 21 20 41 41 H 1.07991 * 119.99357 * 180.02562 * 24 20 19 42 42 H 1.08001 * 119.89048 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3428 7 6 5.5009 -1.2979 -0.9450 8 1 6.2198 -0.5459 -0.6545 9 6 5.8605 -2.6289 -0.9528 10 7 4.9854 -3.5444 -1.3069 11 14 7.5904 -3.1319 -0.4589 12 1 7.6339 -3.3850 1.0036 13 1 7.9731 -4.3683 -1.1869 14 1 8.5394 -2.0422 -0.8011 15 6 4.2615 1.3337 -2.3218 16 8 4.6264 0.8188 -3.3612 17 7 4.1428 2.6737 -2.2388 18 6 4.3492 3.4669 -3.3751 19 6 5.2980 3.0985 -4.3136 20 6 5.4999 3.8920 -5.4448 21 6 6.5102 3.5056 -6.4491 22 8 7.1678 2.4963 -6.2921 23 8 6.7030 4.2723 -7.5401 24 6 4.7429 5.0526 -5.6231 25 6 3.8000 5.4120 -4.6833 26 6 3.6002 4.6258 -3.5606 27 9 2.6709 4.9806 -2.6465 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1764 0.0889 35 1 3.3852 -1.3630 -0.6734 36 1 3.9119 -1.2114 -2.3669 37 1 5.2382 -4.4809 -1.3121 38 1 3.9143 3.0888 -1.3925 39 1 5.8805 2.2003 -4.1710 40 1 7.3759 3.9788 -8.1696 41 1 4.8962 5.6683 -6.4970 42 1 3.2161 6.3098 -4.8228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316065364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = -164.223907 kcal Electronic energy + Delta-G solvation = -29959.500621 eV Core-core repulsion = 25434.290585 eV Total energy + Delta-G solvation = -4525.210036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.13834 -40.66769 -39.97222 -38.41810 -37.54798 -36.13208 -35.11644 -34.58918 -32.59320 -31.08699 -29.82557 -29.66676 -26.93666 -25.97425 -24.79315 -23.69599 -22.80206 -22.33222 -21.35920 -19.60755 -18.55231 -18.08881 -17.51000 -17.30088 -16.54935 -16.45549 -16.22629 -15.95528 -15.64295 -15.56547 -15.56042 -14.92977 -14.75789 -14.30758 -14.16514 -13.91461 -13.79273 -13.39675 -13.28551 -12.80841 -12.63191 -12.31605 -12.13364 -11.98467 -11.73191 -11.63422 -11.58090 -11.24870 -10.91275 -10.86425 -10.70757 -10.42911 -10.38836 -10.09390 -9.61834 -9.48716 -9.36869 -9.03934 -8.35087 -8.26282 -7.66295 -5.96072 -4.00322 0.40754 1.08406 2.35267 2.77011 3.03204 3.35489 3.42167 3.43439 3.47475 3.76631 3.94591 4.00260 4.24320 4.49338 4.52870 4.84462 4.88806 5.07074 5.22770 5.29982 5.36850 5.37909 5.42703 5.49926 5.51796 5.54532 5.63116 5.83470 5.83559 6.00110 6.13685 6.17552 6.33070 6.38912 6.69549 6.85746 7.35807 7.48323 7.55263 7.65033 7.82158 8.01114 8.31196 8.50040 8.97028 9.14231 9.63748 11.11873 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008781 B = 0.004195 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.083180 B = 6672.338844 C = 9279.881056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.110 3.890 5 N -0.593 5.593 6 C 0.263 3.737 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.696 3.304 16 O -0.561 6.561 17 N -0.694 5.694 18 C 0.142 3.858 19 C -0.032 4.032 20 C -0.120 4.120 21 C 0.526 3.474 22 O -0.497 6.497 23 O -0.516 6.516 24 C -0.060 4.060 25 C -0.149 4.149 26 C 0.095 3.905 27 F -0.133 7.133 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.405 0.595 39 H 0.172 0.828 40 H 0.414 0.586 41 H 0.147 0.853 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.835 20.639 -3.494 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.036 4.036 4 C -0.015 4.015 5 N -0.327 5.327 6 C 0.145 3.855 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.398 3.602 16 O -0.436 6.436 17 N -0.345 5.345 18 C 0.044 3.956 19 C -0.052 4.052 20 C -0.122 4.122 21 C 0.369 3.631 22 O -0.385 6.385 23 O -0.328 6.328 24 C -0.080 4.080 25 C -0.168 4.168 26 C 0.072 3.928 27 F -0.112 7.112 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.242 0.758 39 H 0.190 0.810 40 H 0.273 0.727 41 H 0.164 0.836 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.653 19.578 -3.827 20.734 hybrid contribution 0.764 0.003 0.546 0.939 sum -4.889 19.580 -3.281 20.446 Atomic orbital electron populations 1.22707 0.81903 1.02682 0.99145 1.88098 1.18830 1.26638 1.95143 1.23110 0.95112 0.85699 0.99667 1.21497 0.91417 0.98513 0.90027 1.47575 1.67020 1.09573 1.08520 1.19330 0.96860 0.70169 0.99176 1.21466 0.97428 0.92254 1.45528 0.92612 1.24893 0.97346 0.96381 0.95309 1.69939 1.34336 1.00990 1.47895 0.86530 0.84716 0.78110 0.78243 1.20738 1.21149 1.19960 1.15977 0.79353 0.79670 0.85214 1.90925 1.52186 1.71696 1.28814 1.42929 1.75013 1.06031 1.10520 1.17315 0.95868 0.91427 0.90957 1.21567 0.93798 0.99270 0.90587 1.18914 0.99545 0.98123 0.95610 1.20704 0.81569 0.80521 0.80302 1.90982 1.46130 1.25202 1.76140 1.84521 1.60074 1.54674 1.33519 1.21189 0.93286 0.94889 0.98610 1.20866 1.01352 1.01250 0.93332 1.17792 0.89409 0.96286 0.89268 1.91489 1.62934 1.91609 1.65133 0.89661 0.94636 0.94588 0.92880 0.93722 0.88240 0.90831 0.93253 0.94014 0.92811 0.75794 0.81027 0.72735 0.83569 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.27 9.53 -35.23 -0.34 -6.61 16 3 C 0.04 0.59 6.28 37.16 0.23 0.83 16 4 C 0.11 1.74 5.62 -4.04 -0.02 1.71 16 5 N -0.59 -12.53 2.42 -180.81 -0.44 -12.97 16 6 C 0.26 6.98 4.98 -5.19 -0.03 6.95 16 7 C -0.53 -15.11 9.39 -34.44 -0.32 -15.44 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 11 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.70 14.64 8.12 -86.92 -0.71 13.93 16 16 O -0.56 -14.19 13.34 5.28 0.07 -14.12 16 17 N -0.69 -11.06 5.10 -14.20 -0.07 -11.14 16 18 C 0.14 2.13 6.31 -83.63 -0.53 1.61 16 19 C -0.03 -0.52 8.24 -38.98 -0.32 -0.84 16 20 C -0.12 -1.61 5.87 -105.00 -0.62 -2.22 16 21 C 0.53 7.14 8.27 34.55 0.29 7.42 16 22 O -0.50 -8.85 17.13 -19.25 -0.33 -9.18 16 23 O -0.52 -4.67 12.67 -40.58 -0.51 -5.18 16 24 C -0.06 -0.60 9.61 -39.16 -0.38 -0.98 16 25 C -0.15 -1.42 10.00 -39.61 -0.40 -1.82 16 26 C 0.10 1.15 7.31 -39.11 -0.29 0.86 16 27 F -0.13 -1.54 16.94 2.25 0.04 -1.50 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 1.66 8.07 -51.93 -0.42 1.24 16 34 H 0.07 0.88 6.30 -51.93 -0.33 0.56 16 35 H 0.05 1.36 7.12 -51.93 -0.37 0.99 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.40 5.18 6.35 -40.82 -0.26 4.92 16 39 H 0.17 3.49 5.78 -52.48 -0.30 3.19 16 40 H 0.41 1.97 9.11 45.56 0.42 2.39 16 41 H 0.15 1.06 7.60 -52.49 -0.40 0.66 16 42 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -37.24 370.38 -6.48 -43.72 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.13 Total: 5.07 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: -2.07 Total: 15.28 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.23 Total: -50.37 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -1.11 Total: -35.09 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.24 -6.48 -43.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316065364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.503 kcal (2) G-P(sol) polarization free energy of solvation -37.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds