Wall clock time and date at job start Sat Apr 11 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00437 * 2 1 4 4 C 1.52991 * 109.47491 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47357 * 65.00296 * 4 3 2 6 6 C 1.46505 * 119.99550 * 270.00505 * 5 4 3 7 7 C 1.50704 * 109.46611 * 269.99164 * 6 5 4 8 8 H 1.08000 * 120.00374 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99895 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00106 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 119.99752 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47180 * 90.00094 * 11 9 7 13 13 H 1.48506 * 109.46667 * 209.99959 * 11 9 7 14 14 H 1.48496 * 109.47273 * 329.99436 * 11 9 7 15 15 C 1.34771 * 120.00305 * 89.99285 * 5 4 3 16 16 O 1.21581 * 120.00083 * 0.02562 * 15 5 4 17 17 N 1.34779 * 120.00128 * 180.02562 * 15 5 4 18 18 C 1.39409 * 120.00181 * 184.52517 * 17 15 5 19 19 C 1.39240 * 119.89505 * 325.07657 * 18 17 15 20 20 C 1.36556 * 120.27560 * 180.27720 * 19 18 17 21 21 C 1.39877 * 120.07130 * 359.45105 * 20 19 18 22 22 C 1.47290 * 120.10474 * 180.25618 * 21 20 19 23 23 O 1.21528 * 120.00052 * 179.97438 * 22 21 20 24 24 O 1.34773 * 119.99476 * 359.97438 * 22 21 20 25 25 C 1.40084 * 119.79355 * 0.27546 * 21 20 19 26 26 F 1.35102 * 120.13692 * 180.02562 * 25 21 20 27 27 C 1.38041 * 119.72488 * 359.97438 * 25 21 20 28 28 H 1.09000 * 109.47142 * 59.99338 * 1 2 3 29 29 H 1.08996 * 109.47565 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46863 * 300.00200 * 1 2 3 31 31 H 1.09000 * 109.47365 * 59.99803 * 3 2 1 32 32 H 1.09002 * 109.46982 * 300.00063 * 3 2 1 33 33 H 1.08995 * 109.47248 * 305.00133 * 4 3 2 34 34 H 1.09001 * 109.47400 * 185.00102 * 4 3 2 35 35 H 1.08992 * 109.47800 * 29.99460 * 6 5 4 36 36 H 1.09000 * 109.46761 * 149.99965 * 6 5 4 37 37 H 0.97005 * 119.99975 * 179.97438 * 10 9 7 38 38 H 0.96997 * 120.00111 * 4.52801 * 17 15 5 39 39 H 1.07993 * 119.86247 * 0.02566 * 19 18 17 40 40 H 1.07996 * 119.95923 * 179.72892 * 20 19 18 41 41 H 0.96705 * 116.99649 * 180.02562 * 24 22 21 42 42 H 1.08004 * 120.03705 * 179.97438 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3428 7 6 5.5009 -1.2979 -0.9450 8 1 6.2195 -0.5461 -0.6539 9 6 5.8605 -2.6289 -0.9528 10 7 7.0787 -2.9829 -0.6062 11 14 4.6177 -3.9292 -1.4571 12 1 4.7033 -4.1539 -2.9225 13 1 4.9119 -5.1980 -0.7437 14 1 3.2501 -3.4695 -1.1058 15 6 4.2614 1.3337 -2.3218 16 8 4.1542 2.5425 -2.2470 17 7 4.6659 0.7631 -3.4739 18 6 5.0518 1.5617 -4.5495 19 6 4.4077 2.7745 -4.7796 20 6 4.7756 3.5602 -5.8341 21 6 5.8109 3.1546 -6.6827 22 6 6.2121 4.0042 -7.8170 23 8 7.1122 3.6502 -8.5528 24 8 5.5809 5.1741 -8.0389 25 6 6.4648 1.9377 -6.4506 26 9 7.4661 1.5394 -7.2656 27 6 6.0826 1.1476 -5.3851 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1764 0.0889 35 1 3.3852 -1.3630 -0.6735 36 1 3.9119 -1.2114 -2.3669 37 1 7.3316 -3.9194 -0.6113 38 1 4.6885 -0.2033 -3.5547 39 1 3.6111 3.0932 -4.1237 40 1 4.2696 4.4978 -6.0104 41 1 5.8790 5.6971 -8.7957 42 1 6.5830 0.2082 -5.2018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317883966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:26 Heat of formation + Delta-G solvation = -166.107107 kcal Electronic energy + Delta-G solvation = -29655.441670 eV Core-core repulsion = 25130.149972 eV Total energy + Delta-G solvation = -4525.291697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.88871 -40.68562 -40.09209 -38.53048 -37.57534 -36.12870 -35.29460 -34.65837 -32.67717 -30.99384 -30.49716 -29.47699 -27.72225 -26.16066 -24.61579 -23.04764 -22.71811 -22.68088 -21.38798 -19.60618 -18.40042 -18.11738 -17.47176 -17.24234 -17.15772 -16.28453 -16.14045 -16.00596 -15.88077 -15.46452 -15.24245 -15.16141 -14.72232 -14.52670 -14.29877 -14.27424 -13.68150 -13.53348 -13.11794 -12.70943 -12.65402 -12.42130 -12.34844 -12.06825 -11.83895 -11.69571 -11.66703 -11.53451 -11.12743 -10.96719 -10.73183 -10.62744 -10.38134 -10.26932 -9.74701 -9.68398 -9.51596 -8.92817 -8.79953 -8.32212 -7.84116 -6.28560 -4.31991 0.51747 1.19870 2.42128 2.81969 2.92958 3.11791 3.22929 3.24466 3.37239 3.75327 3.96063 4.08196 4.20488 4.28195 4.65605 4.98710 5.01655 5.08571 5.15051 5.22047 5.30915 5.39075 5.47724 5.48583 5.53473 5.67644 5.80271 5.88358 5.95162 6.13978 6.17912 6.23921 6.29878 6.35585 6.46695 6.65547 6.91397 6.97855 7.24489 7.34035 7.42914 7.79590 8.09732 8.35113 8.75510 8.86058 9.29772 10.83665 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.003458 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.227505 B = 8096.011062 C = 9942.569844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.045 3.955 4 C 0.138 3.862 5 N -0.591 5.591 6 C 0.211 3.789 7 C -0.548 4.548 8 H 0.079 0.921 9 C 0.079 3.921 10 N -0.887 5.887 11 Si 0.867 3.133 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.260 1.260 15 C 0.710 3.290 16 O -0.596 6.596 17 N -0.677 5.677 18 C 0.258 3.742 19 C -0.154 4.154 20 C -0.014 4.014 21 C -0.206 4.206 22 C 0.531 3.469 23 O -0.512 6.512 24 O -0.513 6.513 25 C 0.192 3.808 26 F -0.115 7.115 27 C -0.207 4.207 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.016 0.984 37 H 0.267 0.733 38 H 0.421 0.579 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.412 0.588 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.605 10.541 -6.955 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.032 4.032 4 C 0.014 3.986 5 N -0.323 5.323 6 C 0.090 3.910 7 C -0.587 4.587 8 H 0.097 0.903 9 C -0.126 4.126 10 N -0.524 5.524 11 Si 0.693 3.307 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.184 1.184 15 C 0.413 3.587 16 O -0.477 6.477 17 N -0.324 5.324 18 C 0.157 3.843 19 C -0.174 4.174 20 C -0.033 4.033 21 C -0.209 4.209 22 C 0.376 3.624 23 O -0.401 6.401 24 O -0.325 6.325 25 C 0.171 3.829 26 F -0.093 7.093 27 C -0.229 4.229 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.261 0.739 39 H 0.174 0.826 40 H 0.164 0.836 41 H 0.271 0.729 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.321 10.624 -6.605 16.218 hybrid contribution -0.199 -0.997 -0.825 1.309 sum -10.519 9.627 -7.430 16.079 Atomic orbital electron populations 1.22688 0.81985 1.02372 0.99411 1.88009 1.18842 1.27763 1.95276 1.23092 0.95188 0.84821 1.00147 1.21328 0.90854 0.99909 0.86470 1.47057 1.67010 1.08379 1.09836 1.19829 0.98757 0.75481 0.96898 1.21406 0.95809 0.93840 1.47619 0.90319 1.24871 0.95056 0.98284 0.94363 1.69886 1.18091 1.17644 1.46764 0.86977 0.82575 0.81886 0.79221 1.19924 1.20788 1.18390 1.15745 0.77812 0.84950 0.80207 1.90831 1.61051 1.12178 1.83599 1.42867 1.67540 1.10942 1.11057 1.17561 0.89954 0.91043 0.85700 1.21189 1.02789 0.94772 0.98695 1.20902 0.92527 0.98778 0.91073 1.18914 1.05151 0.96371 1.00474 1.20530 0.78920 0.79369 0.83588 1.90947 1.29437 1.72451 1.47263 1.84560 1.62144 1.32840 1.52941 1.17222 0.85627 0.91505 0.88571 1.91595 1.57142 1.90101 1.70446 1.20868 1.00079 1.04037 0.97884 0.94555 0.89972 0.94468 0.92762 0.93160 0.88890 0.88790 0.92765 0.96629 0.92256 0.73858 0.82563 0.83572 0.72944 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.81 9.53 -35.23 -0.34 -6.14 16 3 C 0.05 0.63 6.28 37.15 0.23 0.86 16 4 C 0.14 2.24 5.81 -4.05 -0.02 2.22 16 5 N -0.59 -11.09 2.42 -180.81 -0.44 -11.52 16 6 C 0.21 4.39 3.85 -5.19 -0.02 4.37 16 7 C -0.55 -13.73 9.94 -34.44 -0.34 -14.08 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 9 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -25.06 13.96 55.43 0.77 -24.29 16 11 Si 0.87 19.05 27.47 -169.99 -4.67 14.39 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 15 C 0.71 13.20 8.12 -86.92 -0.71 12.49 16 16 O -0.60 -11.52 13.32 5.29 0.07 -11.45 16 17 N -0.68 -11.39 5.19 -14.23 -0.07 -11.46 16 18 C 0.26 3.94 6.30 -83.76 -0.53 3.42 16 19 C -0.15 -2.16 8.62 -39.82 -0.34 -2.50 16 20 C -0.01 -0.17 9.55 -39.58 -0.38 -0.55 16 21 C -0.21 -2.82 5.88 -104.91 -0.62 -3.43 16 22 C 0.53 7.00 8.26 34.41 0.28 7.29 16 23 O -0.51 -8.27 16.12 -19.29 -0.31 -8.58 16 24 O -0.51 -4.74 12.67 -40.69 -0.52 -5.25 16 25 C 0.19 2.85 7.28 -38.96 -0.28 2.57 16 26 F -0.11 -1.87 15.55 2.25 0.04 -1.83 16 27 C -0.21 -3.03 9.93 -39.37 -0.39 -3.42 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 34 H 0.09 1.46 7.42 -51.93 -0.39 1.08 16 35 H 0.05 1.17 6.17 -51.93 -0.32 0.85 16 36 H 0.02 0.31 5.72 -51.93 -0.30 0.02 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.42 6.95 6.51 -40.82 -0.27 6.69 16 39 H 0.16 2.28 6.18 -52.49 -0.32 1.96 16 40 H 0.15 1.43 7.60 -52.49 -0.40 1.03 16 41 H 0.41 1.88 9.11 45.56 0.42 2.29 16 42 H 0.15 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -32.16 365.20 -6.18 -38.34 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.12 Total: 9.64 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: -2.10 Total: 12.66 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.26 Total: -47.27 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -1.09 Total: -31.43 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.67 Total: 14.39 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.16 -6.18 -38.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317883966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.767 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds