Wall clock time and date at job start Sat Apr 11 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00437 * 2 1 4 4 C 1.52991 * 109.47491 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47357 * 65.00296 * 4 3 2 6 6 C 1.46505 * 119.99550 * 270.00505 * 5 4 3 7 7 C 1.50704 * 109.46611 * 269.99164 * 6 5 4 8 8 H 1.08000 * 120.00374 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99895 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00106 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 119.99752 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47180 * 90.00094 * 11 9 7 13 13 H 1.48506 * 109.46667 * 209.99959 * 11 9 7 14 14 H 1.48496 * 109.47273 * 329.99436 * 11 9 7 15 15 C 1.34771 * 120.00305 * 89.99285 * 5 4 3 16 16 O 1.21581 * 120.00083 * 0.02562 * 15 5 4 17 17 N 1.34779 * 120.00128 * 180.02562 * 15 5 4 18 18 C 1.39409 * 120.00181 * 184.52517 * 17 15 5 19 19 C 1.39240 * 119.89505 * 325.07657 * 18 17 15 20 20 C 1.36556 * 120.27560 * 180.27720 * 19 18 17 21 21 C 1.39877 * 120.07130 * 359.45105 * 20 19 18 22 22 C 1.47290 * 120.10474 * 180.25618 * 21 20 19 23 23 O 1.21528 * 120.00052 * 179.97438 * 22 21 20 24 24 O 1.34773 * 119.99476 * 359.97438 * 22 21 20 25 25 C 1.40084 * 119.79355 * 0.27546 * 21 20 19 26 26 F 1.35102 * 120.13692 * 180.02562 * 25 21 20 27 27 C 1.38041 * 119.72488 * 359.97438 * 25 21 20 28 28 H 1.09000 * 109.47142 * 59.99338 * 1 2 3 29 29 H 1.08996 * 109.47565 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46863 * 300.00200 * 1 2 3 31 31 H 1.09000 * 109.47365 * 59.99803 * 3 2 1 32 32 H 1.09002 * 109.46982 * 300.00063 * 3 2 1 33 33 H 1.08995 * 109.47248 * 305.00133 * 4 3 2 34 34 H 1.09001 * 109.47400 * 185.00102 * 4 3 2 35 35 H 1.08992 * 109.47800 * 29.99460 * 6 5 4 36 36 H 1.09000 * 109.46761 * 149.99965 * 6 5 4 37 37 H 0.97005 * 119.99975 * 179.97438 * 10 9 7 38 38 H 0.96997 * 120.00111 * 4.52801 * 17 15 5 39 39 H 1.07993 * 119.86247 * 0.02566 * 19 18 17 40 40 H 1.07996 * 119.95923 * 179.72892 * 20 19 18 41 41 H 0.96705 * 116.99649 * 180.02562 * 24 22 21 42 42 H 1.08004 * 120.03705 * 179.97438 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3428 7 6 5.5009 -1.2979 -0.9450 8 1 6.2195 -0.5461 -0.6539 9 6 5.8605 -2.6289 -0.9528 10 7 7.0787 -2.9829 -0.6062 11 14 4.6177 -3.9292 -1.4571 12 1 4.7033 -4.1539 -2.9225 13 1 4.9119 -5.1980 -0.7437 14 1 3.2501 -3.4695 -1.1058 15 6 4.2614 1.3337 -2.3218 16 8 4.1542 2.5425 -2.2470 17 7 4.6659 0.7631 -3.4739 18 6 5.0518 1.5617 -4.5495 19 6 4.4077 2.7745 -4.7796 20 6 4.7756 3.5602 -5.8341 21 6 5.8109 3.1546 -6.6827 22 6 6.2121 4.0042 -7.8170 23 8 7.1122 3.6502 -8.5528 24 8 5.5809 5.1741 -8.0389 25 6 6.4648 1.9377 -6.4506 26 9 7.4661 1.5394 -7.2656 27 6 6.0826 1.1476 -5.3851 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1764 0.0889 35 1 3.3852 -1.3630 -0.6735 36 1 3.9119 -1.2114 -2.3669 37 1 7.3316 -3.9194 -0.6113 38 1 4.6885 -0.2033 -3.5547 39 1 3.6111 3.0932 -4.1237 40 1 4.2696 4.4978 -6.0104 41 1 5.8790 5.6971 -8.7957 42 1 6.5830 0.2082 -5.2018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317883966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:25 Heat of formation + Delta-G solvation = -188.123099 kcal Electronic energy + Delta-G solvation = -29656.396355 eV Core-core repulsion = 25130.149972 eV Total energy + Delta-G solvation = -4526.246382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.10132 -41.97473 -41.17869 -39.71015 -38.67064 -37.06868 -36.78216 -35.95013 -34.58845 -32.16778 -31.69220 -30.83110 -29.29058 -27.13730 -25.77372 -24.45475 -24.16371 -23.87712 -22.49261 -20.96609 -19.62630 -19.16573 -19.08557 -18.80471 -18.31677 -17.46576 -17.36649 -17.12560 -17.00922 -16.71648 -16.51911 -16.28012 -16.07983 -15.88677 -15.58921 -15.39350 -15.15242 -14.59553 -14.44117 -14.30347 -13.96944 -13.68978 -13.59565 -13.42137 -13.12566 -12.76500 -12.72022 -12.67138 -12.58652 -12.50452 -12.06131 -11.92178 -11.76392 -11.69961 -11.55353 -11.11733 -10.78722 -10.54558 -10.06423 -9.67394 -9.23353 -8.29810 -6.37932 -0.60573 0.08048 1.33582 1.39440 1.43396 1.51397 1.54760 1.97705 2.06191 2.34677 2.56751 2.77362 2.95480 3.04307 3.06766 3.56355 3.92045 3.98148 4.07051 4.17608 4.20127 4.31488 4.43487 4.57279 4.57853 4.62530 4.65394 4.78488 4.87921 4.90356 4.94300 5.00483 5.04284 5.09986 5.27846 5.42741 5.52823 5.54386 5.74842 5.93891 6.19738 6.33131 6.66733 6.80332 6.94994 7.27301 7.42439 8.86099 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.003458 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.227505 B = 8096.011062 C = 9942.569844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.056 3.944 4 C 0.132 3.868 5 N -0.597 5.597 6 C 0.225 3.775 7 C -0.542 4.542 8 H 0.031 0.969 9 C 0.022 3.978 10 N -0.940 5.940 11 Si 0.936 3.064 12 H -0.259 1.259 13 H -0.288 1.288 14 H -0.239 1.239 15 C 0.707 3.293 16 O -0.606 6.606 17 N -0.678 5.678 18 C 0.239 3.761 19 C -0.152 4.152 20 C 0.006 3.994 21 C -0.206 4.206 22 C 0.539 3.461 23 O -0.546 6.546 24 O -0.496 6.496 25 C 0.176 3.824 26 F -0.126 7.126 27 C -0.205 4.205 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.035 0.965 37 H 0.268 0.732 38 H 0.420 0.580 39 H 0.155 0.845 40 H 0.179 0.821 41 H 0.435 0.565 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.269 11.572 -7.906 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.022 4.022 4 C 0.009 3.991 5 N -0.330 5.330 6 C 0.103 3.897 7 C -0.581 4.581 8 H 0.049 0.951 9 C -0.177 4.177 10 N -0.580 5.580 11 Si 0.759 3.241 12 H -0.184 1.184 13 H -0.214 1.214 14 H -0.163 1.163 15 C 0.409 3.591 16 O -0.487 6.487 17 N -0.325 5.325 18 C 0.140 3.860 19 C -0.172 4.172 20 C -0.013 4.013 21 C -0.209 4.209 22 C 0.385 3.615 23 O -0.438 6.438 24 O -0.310 6.310 25 C 0.155 3.845 26 F -0.105 7.105 27 C -0.227 4.227 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.260 0.740 39 H 0.172 0.828 40 H 0.197 0.803 41 H 0.298 0.702 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.017 11.719 -7.582 19.085 hybrid contribution 0.659 -1.148 -0.539 1.429 sum -12.358 10.571 -8.121 18.177 Atomic orbital electron populations 1.22874 0.79938 1.03373 1.00696 1.87947 1.21139 1.28388 1.95538 1.22959 0.93060 0.84781 1.01374 1.21483 0.93027 0.99511 0.85119 1.47094 1.67421 1.07639 1.10801 1.19538 0.95695 0.76895 0.97586 1.21546 0.97038 0.92865 1.46634 0.95073 1.25748 0.96856 1.00764 0.94342 1.70051 1.20659 1.18152 1.49099 0.85882 0.80617 0.78227 0.79393 1.18410 1.21424 1.16250 1.15845 0.77795 0.84916 0.80497 1.90810 1.61596 1.12388 1.83883 1.42802 1.67550 1.11020 1.11102 1.17718 0.90798 0.91761 0.85712 1.21222 1.02567 0.94349 0.99111 1.21151 0.91403 0.99248 0.89451 1.19112 1.04973 0.95937 1.00852 1.20376 0.78337 0.80010 0.82811 1.90946 1.31030 1.73482 1.48374 1.84498 1.61089 1.31342 1.54065 1.17396 0.85931 0.92361 0.88764 1.91563 1.57752 1.90337 1.70815 1.20837 0.99983 1.04104 0.97796 0.93763 0.89206 0.92641 0.89920 0.93335 0.89988 0.88555 0.92693 0.94767 0.92321 0.73977 0.82778 0.80327 0.70235 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -11.72 9.53 -148.98 -1.42 -13.14 16 3 C 0.06 1.45 6.28 71.98 0.45 1.90 16 4 C 0.13 4.22 5.81 86.38 0.50 4.72 16 5 N -0.60 -22.28 2.42 -844.22 -2.04 -24.32 16 6 C 0.23 9.21 3.85 85.63 0.33 9.54 16 7 C -0.54 -27.80 9.94 25.60 0.25 -27.55 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C 0.02 1.17 5.47 84.66 0.46 1.63 16 10 N -0.94 -54.85 13.96 21.45 0.30 -54.55 16 11 Si 0.94 38.94 27.47 68.60 1.88 40.82 16 12 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 13 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.24 -9.12 6.54 99.48 0.65 -8.47 16 15 C 0.71 26.03 8.12 179.06 1.45 27.49 16 16 O -0.61 -22.96 13.32 -3.97 -0.05 -23.02 16 17 N -0.68 -22.64 5.19 -317.21 -1.65 -24.28 16 18 C 0.24 7.19 6.30 38.36 0.24 7.43 16 19 C -0.15 -4.01 8.62 22.12 0.19 -3.82 16 20 C 0.01 0.13 9.55 22.27 0.21 0.35 16 21 C -0.21 -5.27 5.88 -20.05 -0.12 -5.39 16 22 C 0.54 13.11 8.26 70.20 0.58 13.69 16 23 O -0.55 -17.07 16.12 19.75 0.32 -16.76 16 24 O -0.50 -7.47 12.67 -56.85 -0.72 -8.19 16 25 C 0.18 5.19 7.28 22.67 0.17 5.35 16 26 F -0.13 -4.15 15.55 44.97 0.70 -3.45 16 27 C -0.21 -6.03 9.93 22.41 0.22 -5.80 16 28 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 34 H 0.10 2.99 7.42 -2.39 -0.02 2.97 16 35 H 0.06 2.28 6.17 -2.39 -0.01 2.27 16 36 H 0.03 1.30 5.72 -2.39 -0.01 1.28 16 37 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 38 H 0.42 13.80 6.51 -92.71 -0.60 13.19 16 39 H 0.15 4.23 6.18 -2.91 -0.02 4.21 16 40 H 0.18 2.74 7.60 -2.91 -0.02 2.72 16 41 H 0.44 2.44 9.11 -74.05 -0.67 1.77 16 42 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -70.95 365.20 3.28 -67.67 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.23 Total: 27.89 kcal Atomic # 6 Polarization: 25.13 SS G_CDS: 6.20 Total: 31.32 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -3.39 Total: -103.16 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -1.87 Total: -61.10 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.70 Total: -3.45 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.88 Total: 40.82 kcal Total: -70.95 3.28 -67.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317883966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.458 kcal (2) G-P(sol) polarization free energy of solvation -70.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds