Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34773 * 117.00080 * 2 1 4 4 O 1.21524 * 120.00017 * 0.02562 * 3 2 1 5 5 C 1.47293 * 119.99799 * 180.02562 * 3 2 1 6 6 C 1.39912 * 120.18510 * 354.13255 * 5 3 2 7 7 C 1.37706 * 120.05585 * 179.97438 * 6 5 3 8 8 C 1.38582 * 120.42142 * 359.79425 * 7 6 5 9 9 C 1.38507 * 120.36667 * 0.46534 * 8 7 6 10 10 N 1.40016 * 120.03162 * 179.78625 * 9 8 7 11 11 C 1.34782 * 120.00252 * 34.41035 * 10 9 8 12 12 O 1.21611 * 119.99752 * 356.13081 * 11 10 9 13 13 C 1.47583 * 120.00128 * 176.13437 * 11 10 9 14 14 C 1.40046 * 119.89728 * 180.02562 * 13 11 10 15 15 C 1.36300 * 120.10484 * 180.29819 * 14 13 11 16 16 C 1.40899 * 119.89239 * 359.45688 * 15 14 13 17 17 C 1.41090 * 120.09991 * 180.25140 * 16 15 14 18 18 H 1.08004 * 119.99809 * 213.96883 * 17 16 15 19 19 C 1.40221 * 119.99966 * 33.97097 * 17 16 15 20 20 N 1.30645 * 120.00171 * 5.91032 * 19 17 16 21 21 Si 1.86804 * 120.00066 * 185.91600 * 19 17 16 22 22 H 1.48495 * 109.47230 * 59.99488 * 21 19 17 23 23 H 1.48494 * 109.47329 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46586 * 299.99715 * 21 19 17 25 25 C 1.40902 * 119.79708 * 0.53815 * 16 15 14 26 26 C 1.36293 * 119.89334 * 359.74041 * 25 16 15 27 27 C 1.39612 * 119.93691 * 359.51325 * 9 8 7 28 28 N 1.38976 * 120.21146 * 180.22979 * 27 9 8 29 29 H 1.09006 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46830 * 299.99316 * 1 2 3 31 31 H 1.08997 * 109.47285 * 59.99779 * 1 2 3 32 32 H 1.08000 * 119.97241 * 359.97438 * 6 5 3 33 33 H 1.07995 * 119.79072 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.81686 * 180.22902 * 8 7 6 35 35 H 0.97008 * 120.00478 * 214.40265 * 10 9 8 36 36 H 1.07994 * 119.94422 * 0.02562 * 14 13 11 37 37 H 1.08000 * 120.04856 * 179.72405 * 15 14 13 38 38 H 0.96998 * 120.00074 * 180.02562 * 20 19 17 39 39 H 1.07999 * 120.05361 * 179.70864 * 25 16 15 40 40 H 1.08004 * 119.94763 * 179.97438 * 26 25 16 41 41 H 0.97005 * 120.00165 * 5.58810 * 28 27 9 42 42 H 0.97004 * 120.00066 * 185.58592 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2200 0.0005 5 6 3.5347 1.2778 -0.0006 6 6 4.3002 0.1132 0.1225 7 6 5.6752 0.1882 0.1211 8 6 6.3110 1.4130 -0.0060 9 6 5.5704 2.5775 -0.1236 10 7 6.2200 3.8117 -0.2471 11 6 7.3862 3.8952 -0.9177 12 8 7.9099 2.8884 -1.3546 13 6 8.0278 5.2086 -1.1215 14 6 9.2393 5.2930 -1.8190 15 6 9.8385 6.5031 -2.0044 16 6 9.2314 7.6715 -1.5029 17 6 9.8452 8.9270 -1.6970 18 1 9.7584 9.6932 -0.9407 19 6 10.5680 9.1800 -2.8716 20 7 10.5773 8.2982 -3.8356 21 14 11.5177 10.7777 -3.0581 22 1 12.5360 10.8768 -1.9819 23 1 12.1912 10.8017 -4.3814 24 1 10.5801 11.9251 -2.9597 25 6 8.0125 7.5817 -0.8019 26 6 7.4235 6.3666 -0.6164 27 6 4.1755 2.5190 -0.1245 28 7 3.4268 3.6834 -0.2469 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.8123 -0.8455 0.2187 33 1 6.2619 -0.7135 0.2160 34 1 7.3900 1.4601 -0.0096 35 1 5.8308 4.6067 0.1497 36 1 9.7016 4.3974 -2.2067 37 1 10.7750 6.5666 -2.5385 38 1 11.0776 8.4731 -4.6480 39 1 7.5459 8.4741 -0.4117 40 1 6.4894 6.2967 -0.0788 41 1 3.8702 4.5300 -0.4133 42 1 2.4607 3.6496 -0.1660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338619387.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = -68.348001 kcal Electronic energy + Delta-G solvation = -27755.129188 eV Core-core repulsion = 23664.845868 eV Total energy + Delta-G solvation = -4090.283320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95565 -40.00344 -38.44219 -37.18840 -36.65893 -34.85206 -33.91762 -33.85129 -30.93639 -30.07629 -29.65180 -28.36008 -27.77394 -25.95002 -24.18758 -22.78402 -21.70282 -21.38795 -20.85376 -19.73230 -18.46611 -17.55352 -17.43375 -17.19030 -16.85865 -16.52858 -16.36775 -15.74097 -15.35200 -14.59752 -14.55755 -14.19235 -14.07095 -13.86929 -13.69070 -13.58945 -13.28453 -12.89272 -12.81434 -12.47222 -12.35170 -12.04280 -11.93359 -11.68683 -11.53078 -11.29913 -11.07106 -11.05552 -10.76079 -10.69575 -10.56892 -10.11092 -10.10038 -9.60830 -9.48439 -9.12817 -8.45716 -7.81891 -7.61415 -7.32169 -6.99059 -4.69685 0.77274 1.50053 2.08478 2.47105 2.50791 2.87368 2.93285 2.94704 2.95821 3.44221 3.64005 3.74360 3.82218 3.94977 4.51883 4.59480 4.83067 4.91118 4.98287 5.04410 5.22192 5.39624 5.42767 5.46463 5.60908 5.81628 5.86408 6.02693 6.14010 6.16226 6.29149 6.49971 6.67505 6.74234 6.77907 6.92046 6.95584 7.00219 7.34698 7.36629 7.46796 7.55552 7.60512 7.78864 7.83619 7.94196 8.02159 8.35874 8.56625 8.65309 8.80334 9.93562 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026336 B = 0.002102 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.941779 B =13320.370858 C =14029.384233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.526 3.474 4 O -0.528 6.528 5 C -0.215 4.215 6 C -0.037 4.037 7 C -0.174 4.174 8 C -0.039 4.039 9 C 0.070 3.930 10 N -0.679 5.679 11 C 0.572 3.428 12 O -0.552 6.552 13 C -0.276 4.276 14 C -0.036 4.036 15 C -0.169 4.169 16 C 0.131 3.869 17 C -0.447 4.447 18 H 0.084 0.916 19 C 0.071 3.929 20 N -0.783 5.783 21 Si 0.919 3.081 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.225 4.225 26 C -0.055 4.055 27 C 0.265 3.735 28 N -0.855 5.855 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.148 0.852 35 H 0.403 0.597 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.287 0.713 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.395 0.605 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 -11.048 6.636 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.375 3.625 4 O -0.419 6.419 5 C -0.222 4.222 6 C -0.056 4.056 7 C -0.195 4.195 8 C -0.061 4.061 9 C -0.029 4.029 10 N -0.325 5.325 11 C 0.368 3.632 12 O -0.432 6.432 13 C -0.281 4.281 14 C -0.056 4.056 15 C -0.189 4.189 16 C 0.128 3.872 17 C -0.476 4.476 18 H 0.102 0.898 19 C -0.149 4.149 20 N -0.407 5.407 21 Si 0.742 3.258 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.244 4.244 26 C -0.074 4.074 27 C 0.152 3.848 28 N -0.403 5.403 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.166 0.834 35 H 0.239 0.761 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.223 0.777 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -12.709 -11.472 6.051 18.159 hybrid contribution -0.296 1.575 -0.154 1.610 sum -13.005 -9.897 5.897 17.374 Atomic orbital electron populations 1.23266 0.76204 1.03676 1.02584 1.86564 1.23334 1.32480 1.84469 1.21019 0.88697 0.81117 0.71633 1.90468 1.66758 1.35585 1.49131 1.18094 0.88387 0.93164 1.22540 1.21084 0.93720 0.96594 0.94219 1.20791 0.93888 0.97697 1.07124 1.21481 1.01687 0.90532 0.92370 1.17182 0.88314 0.87703 1.09698 1.43376 1.24579 1.08231 1.56326 1.18722 0.78843 0.90138 0.75478 1.90639 1.63411 1.37795 1.51320 1.18832 1.02100 0.90218 1.16948 1.20516 0.92991 0.97446 0.94612 1.21067 1.01416 0.90823 1.05557 1.17836 0.88995 0.93257 0.87095 1.19765 1.26352 0.98879 1.02575 0.89821 1.26068 0.94668 0.98999 0.95213 1.69683 1.31607 1.34469 1.04895 0.86184 0.79978 0.81061 0.78543 1.18587 1.20059 1.18763 1.20780 0.97878 0.95791 1.09985 1.20362 0.96972 0.92884 0.97138 1.17510 0.89303 0.86458 0.91558 1.43295 1.11911 1.06648 1.78486 0.88044 0.91874 0.91873 0.84909 0.85307 0.83407 0.76078 0.87873 0.86000 0.90180 0.88219 0.89349 0.77703 0.74237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.33 16 2 O -0.35 -3.75 9.83 -40.69 -0.40 -4.15 16 3 C 0.53 6.71 7.87 34.41 0.27 6.98 16 4 O -0.53 -7.29 13.43 -19.28 -0.26 -7.55 16 5 C -0.21 -2.83 5.89 -104.84 -0.62 -3.45 16 6 C -0.04 -0.43 9.61 -39.15 -0.38 -0.80 16 7 C -0.17 -2.13 10.01 -39.65 -0.40 -2.52 16 8 C -0.04 -0.59 8.68 -39.36 -0.34 -0.93 16 9 C 0.07 1.07 6.32 -83.51 -0.53 0.54 16 10 N -0.68 -10.88 4.93 -10.66 -0.05 -10.94 16 11 C 0.57 11.39 7.60 -12.45 -0.09 11.30 16 12 O -0.55 -12.16 13.73 5.27 0.07 -12.09 16 13 C -0.28 -5.93 5.89 -104.73 -0.62 -6.55 16 14 C -0.04 -0.84 9.52 -39.60 -0.38 -1.22 16 15 C -0.17 -4.16 8.57 -39.27 -0.34 -4.50 16 16 C 0.13 3.22 5.51 -106.80 -0.59 2.64 16 17 C -0.45 -10.82 9.03 -37.76 -0.34 -11.16 16 18 H 0.08 1.91 7.86 -52.48 -0.41 1.50 16 19 C 0.07 1.63 5.31 -17.31 -0.09 1.54 16 20 N -0.78 -18.93 10.94 55.56 0.61 -18.32 16 21 Si 0.92 17.25 29.57 -169.99 -5.03 12.23 16 22 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 23 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 25 C -0.22 -4.94 9.73 -39.27 -0.38 -5.33 16 26 C -0.05 -1.09 9.47 -39.61 -0.38 -1.46 16 27 C 0.26 3.73 6.78 -83.36 -0.57 3.17 16 28 N -0.86 -10.75 8.89 32.67 0.29 -10.46 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.13 1.23 7.62 -52.49 -0.40 0.83 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.15 2.44 6.17 -52.49 -0.32 2.11 16 35 H 0.40 5.52 5.79 -40.82 -0.24 5.28 16 36 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 37 H 0.12 3.09 6.44 -52.49 -0.34 2.75 16 38 H 0.29 6.32 8.29 -40.82 -0.34 5.98 16 39 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.09 1.40 6.38 -52.48 -0.33 1.07 16 41 H 0.39 4.46 7.50 -40.82 -0.31 4.16 16 42 H 0.42 5.28 5.34 -40.95 -0.22 5.06 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -28.48 358.56 -8.27 -36.75 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -4.22 Total: 19.55 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -4.69 Total: -10.42 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.85 Total: -39.72 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.59 Total: -23.78 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.48 -8.27 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338619387.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.598 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds