Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34773 * 117.00080 * 2 1 4 4 O 1.21524 * 120.00017 * 0.02562 * 3 2 1 5 5 C 1.47293 * 119.99799 * 180.02562 * 3 2 1 6 6 C 1.39912 * 120.18510 * 354.13255 * 5 3 2 7 7 C 1.37706 * 120.05585 * 179.97438 * 6 5 3 8 8 C 1.38582 * 120.42142 * 359.79425 * 7 6 5 9 9 C 1.38507 * 120.36667 * 0.46534 * 8 7 6 10 10 N 1.40016 * 120.03162 * 179.78625 * 9 8 7 11 11 C 1.34782 * 120.00252 * 34.41035 * 10 9 8 12 12 O 1.21611 * 119.99752 * 356.13081 * 11 10 9 13 13 C 1.47583 * 120.00128 * 176.13437 * 11 10 9 14 14 C 1.40046 * 119.89728 * 180.02562 * 13 11 10 15 15 C 1.36300 * 120.10484 * 180.29819 * 14 13 11 16 16 C 1.40899 * 119.89239 * 359.45688 * 15 14 13 17 17 C 1.41090 * 120.09991 * 180.25140 * 16 15 14 18 18 H 1.08004 * 119.99809 * 213.96883 * 17 16 15 19 19 C 1.40221 * 119.99966 * 33.97097 * 17 16 15 20 20 N 1.30645 * 120.00171 * 5.91032 * 19 17 16 21 21 Si 1.86804 * 120.00066 * 185.91600 * 19 17 16 22 22 H 1.48495 * 109.47230 * 59.99488 * 21 19 17 23 23 H 1.48494 * 109.47329 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46586 * 299.99715 * 21 19 17 25 25 C 1.40902 * 119.79708 * 0.53815 * 16 15 14 26 26 C 1.36293 * 119.89334 * 359.74041 * 25 16 15 27 27 C 1.39612 * 119.93691 * 359.51325 * 9 8 7 28 28 N 1.38976 * 120.21146 * 180.22979 * 27 9 8 29 29 H 1.09006 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46830 * 299.99316 * 1 2 3 31 31 H 1.08997 * 109.47285 * 59.99779 * 1 2 3 32 32 H 1.08000 * 119.97241 * 359.97438 * 6 5 3 33 33 H 1.07995 * 119.79072 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.81686 * 180.22902 * 8 7 6 35 35 H 0.97008 * 120.00478 * 214.40265 * 10 9 8 36 36 H 1.07994 * 119.94422 * 0.02562 * 14 13 11 37 37 H 1.08000 * 120.04856 * 179.72405 * 15 14 13 38 38 H 0.96998 * 120.00074 * 180.02562 * 20 19 17 39 39 H 1.07999 * 120.05361 * 179.70864 * 25 16 15 40 40 H 1.08004 * 119.94763 * 179.97438 * 26 25 16 41 41 H 0.97005 * 120.00165 * 5.58810 * 28 27 9 42 42 H 0.97004 * 120.00066 * 185.58592 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2200 0.0005 5 6 3.5347 1.2778 -0.0006 6 6 4.3002 0.1132 0.1225 7 6 5.6752 0.1882 0.1211 8 6 6.3110 1.4130 -0.0060 9 6 5.5704 2.5775 -0.1236 10 7 6.2200 3.8117 -0.2471 11 6 7.3862 3.8952 -0.9177 12 8 7.9099 2.8884 -1.3546 13 6 8.0278 5.2086 -1.1215 14 6 9.2393 5.2930 -1.8190 15 6 9.8385 6.5031 -2.0044 16 6 9.2314 7.6715 -1.5029 17 6 9.8452 8.9270 -1.6970 18 1 9.7584 9.6932 -0.9407 19 6 10.5680 9.1800 -2.8716 20 7 10.5773 8.2982 -3.8356 21 14 11.5177 10.7777 -3.0581 22 1 12.5360 10.8768 -1.9819 23 1 12.1912 10.8017 -4.3814 24 1 10.5801 11.9251 -2.9597 25 6 8.0125 7.5817 -0.8019 26 6 7.4235 6.3666 -0.6164 27 6 4.1755 2.5190 -0.1245 28 7 3.4268 3.6834 -0.2469 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.8123 -0.8455 0.2187 33 1 6.2619 -0.7135 0.2160 34 1 7.3900 1.4601 -0.0096 35 1 5.8308 4.6067 0.1497 36 1 9.7016 4.3974 -2.2067 37 1 10.7750 6.5666 -2.5385 38 1 11.0776 8.4731 -4.6480 39 1 7.5459 8.4741 -0.4117 40 1 6.4894 6.2967 -0.0788 41 1 3.8702 4.5300 -0.4133 42 1 2.4607 3.6496 -0.1660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338619387.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -84.143087 kcal Electronic energy + Delta-G solvation = -27755.814114 eV Core-core repulsion = 23664.845868 eV Total energy + Delta-G solvation = -4090.968246 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.00585 -41.24003 -39.77800 -38.77870 -37.59637 -36.04217 -35.61578 -35.07823 -32.33345 -31.66648 -31.18099 -29.53802 -28.46454 -27.62423 -25.25388 -24.20255 -23.14370 -22.54238 -22.35085 -21.17181 -19.69587 -19.26076 -18.65319 -18.20672 -17.86524 -17.57273 -17.36918 -17.11210 -16.84760 -15.99990 -15.82976 -15.75720 -15.30931 -15.11285 -14.81203 -14.66005 -14.60557 -14.42438 -14.05587 -13.90177 -13.63627 -13.39342 -13.19417 -12.95087 -12.84661 -12.65275 -12.64403 -12.35558 -11.83910 -11.78777 -11.73279 -11.59153 -11.42796 -11.31795 -11.17585 -10.70225 -9.62397 -9.59266 -9.35008 -8.71505 -8.43402 -6.52234 -0.26864 0.26677 0.58118 1.11382 1.39020 1.41833 1.48613 1.51700 1.64148 2.07153 2.16636 2.18824 2.73667 2.80537 2.89516 3.63084 3.66954 3.99062 4.03849 4.07530 4.26638 4.32069 4.36668 4.38030 4.44668 4.53441 4.64592 4.77301 4.96214 4.99576 5.04367 5.15756 5.20200 5.23882 5.25386 5.45655 5.57536 5.59196 5.72814 5.85896 5.91327 6.00082 6.19516 6.31257 6.50728 6.55613 6.63099 6.77419 6.86068 6.86430 7.28184 8.23567 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026336 B = 0.002102 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.941779 B =13320.370858 C =14029.384233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.526 3.474 4 O -0.543 6.543 5 C -0.225 4.225 6 C -0.019 4.019 7 C -0.172 4.172 8 C -0.051 4.051 9 C 0.041 3.959 10 N -0.660 5.660 11 C 0.573 3.427 12 O -0.578 6.578 13 C -0.280 4.280 14 C -0.049 4.049 15 C -0.189 4.189 16 C 0.103 3.897 17 C -0.478 4.478 18 H 0.091 0.909 19 C 0.029 3.971 20 N -0.819 5.819 21 Si 0.991 3.009 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.256 1.256 25 C -0.234 4.234 26 C -0.043 4.043 27 C 0.261 3.739 28 N -0.850 5.850 29 H 0.135 0.865 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.128 0.872 35 H 0.414 0.586 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.292 0.708 39 H 0.119 0.881 40 H 0.135 0.865 41 H 0.400 0.600 42 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.120 -11.820 7.681 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.375 3.625 4 O -0.436 6.436 5 C -0.232 4.232 6 C -0.038 4.038 7 C -0.193 4.193 8 C -0.073 4.073 9 C -0.056 4.056 10 N -0.307 5.307 11 C 0.369 3.631 12 O -0.460 6.460 13 C -0.284 4.284 14 C -0.068 4.068 15 C -0.208 4.208 16 C 0.100 3.900 17 C -0.506 4.506 18 H 0.109 0.891 19 C -0.187 4.187 20 N -0.444 5.444 21 Si 0.811 3.189 22 H -0.181 1.181 23 H -0.195 1.195 24 H -0.180 1.180 25 C -0.253 4.253 26 C -0.062 4.062 27 C 0.148 3.852 28 N -0.399 5.399 29 H 0.153 0.847 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.181 0.819 33 H 0.173 0.827 34 H 0.146 0.854 35 H 0.252 0.748 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.137 0.863 40 H 0.153 0.847 41 H 0.229 0.771 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -14.974 -12.260 7.124 20.622 hybrid contribution 0.201 1.573 -0.414 1.639 sum -14.774 -10.687 6.709 19.429 Atomic orbital electron populations 1.23600 0.74224 1.05945 1.02643 1.86544 1.25205 1.31119 1.83892 1.20952 0.88530 0.81577 0.71396 1.90459 1.67046 1.36231 1.49851 1.18348 0.89158 0.93346 1.22375 1.21421 0.93342 0.97335 0.91745 1.21045 0.94453 0.97508 1.06249 1.21495 1.00913 0.91791 0.93081 1.17278 0.88958 0.87256 1.12143 1.43008 1.23231 1.09322 1.55109 1.18469 0.79833 0.89054 0.75784 1.90628 1.64478 1.38322 1.52542 1.19089 1.01451 0.91853 1.16012 1.20586 0.94125 0.96794 0.95339 1.20970 1.01349 0.91725 1.06760 1.18201 0.90322 0.93414 0.88060 1.20059 1.27895 0.99156 1.03514 0.89117 1.26961 0.94996 1.02305 0.94431 1.69763 1.32616 1.36474 1.05566 0.85106 0.78511 0.76729 0.78583 1.18141 1.19528 1.17999 1.21043 0.97203 0.97381 1.09714 1.20723 0.98100 0.91396 0.95978 1.17549 0.88782 0.87345 0.91557 1.43272 1.11865 1.06577 1.78137 0.84729 0.91665 0.92023 0.81923 0.82671 0.85417 0.74774 0.88487 0.87913 0.89706 0.86348 0.84727 0.77114 0.74147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.53 16 2 O -0.35 -6.44 9.83 -56.84 -0.56 -7.00 16 3 C 0.53 12.20 7.87 70.20 0.55 12.76 16 4 O -0.54 -14.01 13.43 19.76 0.27 -13.75 16 5 C -0.22 -5.44 5.89 -20.01 -0.12 -5.56 16 6 C -0.02 -0.39 9.61 22.55 0.22 -0.18 16 7 C -0.17 -3.81 10.01 22.23 0.22 -3.59 16 8 C -0.05 -1.50 8.68 22.42 0.19 -1.31 16 9 C 0.04 1.24 6.32 38.23 0.24 1.48 16 10 N -0.66 -20.51 4.93 -305.90 -1.51 -22.02 16 11 C 0.57 22.83 7.60 86.71 0.66 23.49 16 12 O -0.58 -25.93 13.73 -4.07 -0.06 -25.99 16 13 C -0.28 -12.06 5.89 -19.94 -0.12 -12.17 16 14 C -0.05 -2.38 9.52 22.26 0.21 -2.17 16 15 C -0.19 -9.74 8.57 22.47 0.19 -9.55 16 16 C 0.10 5.20 5.51 -21.28 -0.12 5.08 16 17 C -0.48 -23.67 9.03 23.45 0.21 -23.45 16 18 H 0.09 4.19 7.86 -2.91 -0.02 4.17 16 19 C 0.03 1.39 5.31 85.35 0.45 1.84 16 20 N -0.82 -41.11 10.94 21.87 0.24 -40.87 16 21 Si 0.99 35.56 29.57 68.60 2.03 37.59 16 22 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 23 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 25 C -0.23 -10.20 9.73 22.47 0.22 -9.99 16 26 C -0.04 -1.67 9.47 22.25 0.21 -1.46 16 27 C 0.26 6.95 6.78 38.82 0.26 7.22 16 28 N -0.85 -20.03 8.89 -50.55 -0.45 -20.48 16 29 H 0.13 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.16 2.31 7.62 -2.91 -0.02 2.29 16 33 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.13 4.27 6.17 -2.91 -0.02 4.25 16 35 H 0.41 10.55 5.79 -92.70 -0.54 10.02 16 36 H 0.10 4.69 7.63 -2.91 -0.02 4.67 16 37 H 0.10 5.58 6.44 -2.91 -0.02 5.56 16 38 H 0.29 13.32 8.29 -92.71 -0.77 12.55 16 39 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 40 H 0.14 3.86 6.38 -2.91 -0.02 3.84 16 41 H 0.40 8.34 7.50 -92.70 -0.70 7.64 16 42 H 0.42 9.94 5.34 -94.83 -0.51 9.43 16 Total: -1.00 -63.98 358.56 4.04 -59.94 By element: Atomic # 1 Polarization: 49.21 SS G_CDS: -0.61 Total: 48.60 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 4.69 Total: -16.01 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -1.72 Total: -83.37 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -0.35 Total: -46.74 kcal Atomic # 14 Polarization: 35.56 SS G_CDS: 2.03 Total: 37.59 kcal Total: -63.98 4.04 -59.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338619387.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.207 kcal (2) G-P(sol) polarization free energy of solvation -63.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds