Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48501 * 109.46949 * 269.99656 * 3 2 1 5 5 H 1.48497 * 109.47188 * 29.99820 * 3 2 1 6 6 H 1.48503 * 109.47147 * 149.99956 * 3 2 1 7 7 C 1.38952 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99654 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99953 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00325 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99950 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.46969 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99966 * 180.02562 * 13 12 10 15 15 O 1.21591 * 119.99909 * 359.97438 * 14 13 12 16 16 N 1.34781 * 120.00239 * 180.02562 * 14 13 12 17 17 C 1.39769 * 119.99759 * 183.83978 * 16 14 13 18 18 C 1.39109 * 120.53602 * 334.60466 * 17 16 14 19 19 C 1.38587 * 118.44423 * 180.22135 * 18 17 16 20 20 C 1.38353 * 119.44154 * 359.52680 * 19 18 17 21 21 N 1.31719 * 121.05216 * 0.25849 * 20 19 18 22 22 C 1.32644 * 121.68576 * 359.97438 * 21 20 19 23 23 C 1.48255 * 119.77693 * 180.02562 * 22 21 20 24 24 C 1.39401 * 120.12612 * 138.71176 * 23 22 21 25 25 C 1.38001 * 119.86877 * 179.69652 * 24 23 22 26 26 C 1.38327 * 120.12758 * 0.60040 * 25 24 23 27 27 C 1.38333 * 120.25777 * 359.68146 * 26 25 24 28 28 C 1.37998 * 120.12544 * 0.02562 * 27 26 25 29 29 H 0.97005 * 119.99804 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99854 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47171 * 59.99832 * 12 10 9 32 32 H 1.08992 * 109.46909 * 299.99649 * 12 10 9 33 33 H 0.97000 * 120.00368 * 359.97438 * 13 12 10 34 34 H 0.96996 * 119.99493 * 3.83466 * 16 14 13 35 35 H 1.07996 * 120.78009 * 0.02562 * 18 17 16 36 36 H 1.08005 * 120.28102 * 179.80926 * 19 18 17 37 37 H 1.08008 * 119.47676 * 180.23292 * 20 19 18 38 38 H 1.07998 * 120.06383 * 359.97438 * 24 23 22 39 39 H 1.08009 * 119.93703 * 180.29943 * 25 24 23 40 40 H 1.08001 * 119.87102 * 179.69566 * 26 25 24 41 41 H 1.07997 * 119.93275 * 180.02562 * 27 26 25 42 42 H 1.08001 * 120.06438 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1957 -5.9764 0.0027 14 6 1.7465 -7.2471 0.0027 15 8 0.5511 -7.4693 0.0028 16 7 2.6223 -8.2716 0.0037 17 6 2.1585 -9.5876 -0.0773 18 6 0.8779 -9.9136 0.3573 19 6 0.4641 -11.2328 0.2612 20 6 1.3240 -12.1784 -0.2683 21 7 2.5309 -11.8456 -0.6777 22 6 2.9730 -10.5973 -0.6016 23 6 4.3390 -10.2698 -1.0755 24 6 4.5666 -9.1014 -1.8010 25 6 5.8414 -8.7986 -2.2341 26 6 6.8901 -9.6580 -1.9603 27 6 6.6693 -10.8218 -1.2459 28 6 5.3998 -11.1320 -0.8025 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6174 -4.9212 -0.8880 32 1 0.6168 -4.9200 0.8919 33 1 3.1494 -5.7992 0.0022 34 1 3.5745 -8.0955 0.0605 35 1 0.2226 -9.1571 0.7630 36 1 -0.5231 -11.5194 0.5927 37 1 1.0007 -13.2060 -0.3469 38 1 3.7476 -8.4322 -2.0198 39 1 6.0198 -7.8912 -2.7921 40 1 7.8853 -9.4194 -2.3055 41 1 7.4920 -11.4889 -1.0347 42 1 5.2286 -12.0407 -0.2444 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350052009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = 6.433675 kcal Electronic energy + Delta-G solvation = -27786.850257 eV Core-core repulsion = 23732.102465 eV Total energy + Delta-G solvation = -4054.747792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.26793 -39.72849 -38.84918 -38.29497 -35.37201 -34.62837 -33.85997 -33.05504 -31.48181 -31.14613 -31.10314 -29.33310 -27.50863 -24.74117 -24.37441 -23.56685 -22.45026 -21.59236 -20.94972 -19.71512 -18.75903 -18.22625 -17.71536 -17.52545 -16.45742 -16.20172 -15.83612 -15.47802 -15.26839 -15.06680 -14.90054 -14.66281 -14.36762 -14.16376 -13.86568 -13.80560 -13.60516 -13.59007 -13.19199 -12.86133 -12.52162 -12.29507 -12.17454 -11.68110 -11.54080 -11.32382 -11.17647 -11.02023 -10.50316 -10.43276 -10.35105 -9.91406 -9.69398 -9.62147 -9.18005 -9.12621 -8.94175 -8.71276 -8.16632 -8.11122 -6.56968 -3.99199 0.48995 1.11649 1.17150 1.45002 2.44283 3.02563 3.08120 3.18959 3.23987 3.46255 3.66954 3.74854 3.93505 4.02820 4.16809 4.53418 4.70174 4.77953 4.79344 4.79919 4.90176 5.00238 5.08581 5.11540 5.23227 5.33822 5.36682 5.63220 5.75532 5.80530 5.86478 5.88386 5.96668 6.05172 6.11122 6.22730 6.28277 6.30845 6.53262 6.65766 6.70346 6.79524 7.40857 7.77551 7.85648 7.87673 8.37492 8.43648 8.98809 9.32573 9.79944 10.59753 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.002394 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.966850 B =11695.082856 C =13450.753410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.597 6.597 12 C 0.126 3.874 13 N -0.714 5.714 14 C 0.704 3.296 15 O -0.578 6.578 16 N -0.678 5.678 17 C 0.143 3.857 18 C -0.093 4.093 19 C -0.149 4.149 20 C 0.072 3.928 21 N -0.454 5.454 22 C 0.127 3.873 23 C -0.042 4.042 24 C -0.112 4.112 25 C -0.116 4.116 26 C -0.112 4.112 27 C -0.122 4.122 28 C -0.083 4.083 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.410 0.590 34 H 0.412 0.588 35 H 0.170 0.830 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.983 -21.739 -0.907 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.484 6.484 12 C -0.002 4.002 13 N -0.371 5.371 14 C 0.404 3.596 15 O -0.456 6.456 16 N -0.326 5.326 17 C 0.044 3.956 18 C -0.121 4.121 19 C -0.169 4.169 20 C -0.088 4.088 21 N -0.162 5.162 22 C -0.013 4.013 23 C -0.043 4.043 24 C -0.131 4.131 25 C -0.134 4.134 26 C -0.130 4.130 27 C -0.140 4.140 28 C -0.102 4.102 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.248 0.752 34 H 0.250 0.750 35 H 0.187 0.813 36 H 0.156 0.844 37 H 0.174 0.826 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.097 -22.242 -1.244 23.096 hybrid contribution 0.000 1.669 0.314 1.698 sum 6.097 -20.573 -0.930 21.478 Atomic orbital electron populations 1.69611 1.06032 1.28622 1.49073 1.25335 0.95670 0.99979 0.96674 0.85809 0.79242 0.80435 0.78534 1.20221 1.20757 1.19288 1.19727 0.93469 0.81935 1.48393 0.87636 1.41777 1.09511 1.04437 1.62392 1.19683 0.88291 0.84924 0.85906 1.90501 1.13666 1.86769 1.57489 1.20879 0.91086 0.84706 1.03496 1.44801 1.11737 1.03008 1.77518 1.15839 0.84958 0.80604 0.78173 1.90833 1.13830 1.83499 1.57422 1.42709 1.10563 1.03195 1.76114 1.18464 0.95050 0.83738 0.98377 1.22184 0.95300 0.97414 0.97167 1.22187 1.01309 0.93169 1.00258 1.22625 0.89230 1.00089 0.96826 1.67644 1.15941 1.17453 1.15207 1.19441 0.94130 0.88742 0.99003 1.18417 0.90753 0.95487 0.99656 1.21359 0.97664 0.96447 0.97606 1.21149 0.92411 0.99906 0.99923 1.21291 0.99217 0.94435 0.98092 1.21141 0.96866 0.97390 0.98639 1.21211 0.91753 0.98517 0.98720 0.91516 0.76991 0.89639 0.89632 0.75219 0.75029 0.81317 0.84407 0.82567 0.85545 0.85341 0.85816 0.85738 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.37 13.05 55.50 0.72 -22.65 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.13 29.55 -169.99 -5.02 15.10 16 4 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.31 -8.10 9.68 -14.94 -0.14 -8.24 16 8 H 0.11 2.91 7.16 -52.48 -0.38 2.54 16 9 N -0.55 -13.09 5.29 -10.96 -0.06 -13.15 16 10 C 0.43 9.34 7.85 -10.98 -0.09 9.25 16 11 O -0.60 -14.65 15.24 5.55 0.08 -14.56 16 12 C 0.13 2.18 6.15 -5.19 -0.03 2.15 16 13 N -0.71 -11.08 5.53 -66.41 -0.37 -11.45 16 14 C 0.70 10.61 8.46 -86.91 -0.74 9.88 16 15 O -0.58 -10.01 13.31 5.29 0.07 -9.94 16 16 N -0.68 -8.48 3.91 -13.95 -0.05 -8.53 16 17 C 0.14 1.84 6.35 -83.28 -0.53 1.31 16 18 C -0.09 -1.17 8.89 -39.13 -0.35 -1.52 16 19 C -0.15 -1.50 10.10 -39.41 -0.40 -1.89 16 20 C 0.07 0.72 11.17 -17.56 -0.20 0.52 16 21 N -0.45 -5.54 10.11 -9.64 -0.10 -5.63 16 22 C 0.13 1.57 6.42 -82.77 -0.53 1.04 16 23 C -0.04 -0.48 5.35 -104.91 -0.56 -1.04 16 24 C -0.11 -1.20 7.84 -39.24 -0.31 -1.51 16 25 C -0.12 -1.09 10.03 -39.64 -0.40 -1.49 16 26 C -0.11 -0.95 10.04 -39.51 -0.40 -1.35 16 27 C -0.12 -1.05 10.03 -39.63 -0.40 -1.45 16 28 C -0.08 -0.84 9.62 -39.24 -0.38 -1.22 16 29 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.40 9.12 7.90 -40.82 -0.32 8.80 16 31 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.41 6.20 7.45 -40.82 -0.30 5.90 16 34 H 0.41 4.45 6.73 -40.82 -0.27 4.18 16 35 H 0.17 2.35 5.62 -52.49 -0.29 2.06 16 36 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.16 1.08 8.06 -52.48 -0.42 0.65 16 38 H 0.13 1.41 6.85 -52.49 -0.36 1.05 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -31.21 365.45 -9.20 -40.41 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -4.45 Total: 19.85 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -5.53 Total: 5.04 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.15 Total: -61.40 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: 0.15 Total: -24.51 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.21 -9.20 -40.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350052009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.846 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds