Wall clock time and date at job start Sat Apr 11 2020 05:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47331 * 343.94111 * 3 2 1 5 5 C 1.37095 * 120.00255 * 264.23233 * 4 3 2 6 6 H 1.08001 * 120.00132 * 197.72076 * 5 4 3 7 7 C 1.38955 * 119.99891 * 17.72227 * 5 4 3 8 8 N 1.31414 * 119.99970 * 21.39708 * 7 5 4 9 9 Si 1.86795 * 120.00082 * 201.39273 * 7 5 4 10 10 H 1.48503 * 109.46964 * 60.00191 * 9 7 5 11 11 H 1.48499 * 109.47446 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47567 * 300.00479 * 9 7 5 13 13 C 1.34776 * 119.99958 * 84.23902 * 4 3 2 14 14 O 1.21298 * 120.00115 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00019 * 359.97438 * 13 4 3 16 16 C 1.52995 * 109.47102 * 180.02562 * 15 13 4 17 17 C 1.53002 * 109.47146 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47519 * 180.02562 * 17 16 15 19 19 N 1.32408 * 118.52252 * 269.73518 * 18 17 16 20 20 C 1.32401 * 121.52035 * 179.70793 * 19 18 17 21 21 O 1.35281 * 120.89679 * 180.27730 * 20 19 18 22 22 C 1.41430 * 118.21186 * 0.53778 * 20 19 18 23 23 C 1.40002 * 122.12066 * 179.75845 * 22 20 19 24 24 C 1.36344 * 119.49831 * 179.97438 * 23 22 20 25 25 C 1.39247 * 120.90769 * 0.02562 * 24 23 22 26 26 C 1.36298 * 121.03924 * 359.97438 * 25 24 23 27 27 C 1.40170 * 119.58384 * 0.02562 * 26 25 24 28 28 N 1.31151 * 118.52717 * 89.99635 * 18 17 16 29 29 H 1.09004 * 109.46557 * 223.94045 * 3 2 1 30 30 H 1.08998 * 109.46921 * 103.94442 * 3 2 1 31 31 H 0.96997 * 119.99839 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46753 * 60.00590 * 15 13 4 33 33 H 1.08993 * 109.47182 * 300.00677 * 15 13 4 34 34 H 1.08993 * 109.47459 * 300.00268 * 16 15 13 35 35 H 1.08999 * 109.47030 * 60.00520 * 16 15 13 36 36 H 1.09005 * 109.46796 * 299.99881 * 17 16 15 37 37 H 1.08998 * 109.47462 * 59.99907 * 17 16 15 38 38 H 0.96698 * 113.99291 * 270.27119 * 21 20 19 39 39 H 1.08000 * 120.25257 * 0.02562 * 23 22 20 40 40 H 1.08004 * 119.54812 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.48031 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.20473 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0969 -1.3264 0.3821 5 6 3.4380 -1.5823 1.6850 6 1 4.0548 -2.4361 1.9240 7 6 2.9902 -0.7433 2.6981 8 7 1.9365 0.0174 2.5035 9 14 3.8860 -0.6969 4.3366 10 1 5.2938 -0.2773 4.1193 11 1 3.2144 0.2710 5.2407 12 1 3.8617 -2.0478 4.9526 13 6 3.2115 -2.2956 -0.5474 14 8 3.6168 -3.3943 -0.2311 15 6 2.8361 -2.0145 -1.9796 16 6 3.0576 -3.2727 -2.8213 17 6 2.6771 -2.9871 -4.2754 18 6 2.8946 -4.2266 -5.1045 19 7 4.0755 -4.4059 -5.6758 20 6 4.3331 -5.4759 -6.4118 21 8 5.5460 -5.6491 -6.9853 22 6 3.3041 -6.4303 -6.5870 23 6 3.4855 -7.5885 -7.3525 24 6 2.4568 -8.4733 -7.4854 25 6 1.2291 -8.2404 -6.8709 26 6 1.0203 -7.1229 -6.1191 27 6 2.0560 -6.1916 -5.9611 28 7 1.9041 -5.0767 -5.2319 29 1 2.9709 0.7409 0.7132 30 1 2.9711 0.2485 -0.9974 31 1 1.6242 0.6034 3.2106 32 1 3.4560 -1.2051 -2.3654 33 1 1.7868 -1.7241 -2.0298 34 1 4.1068 -3.5635 -2.7711 35 1 2.4375 -4.0818 -2.4353 36 1 1.6278 -2.6961 -4.3260 37 1 3.2974 -2.1781 -4.6612 38 1 5.6205 -5.2676 -7.8707 39 1 4.4334 -7.7799 -7.8334 40 1 2.5957 -9.3668 -8.0761 41 1 0.4299 -8.9566 -6.9919 42 1 0.0626 -6.9555 -5.6489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355711492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:55 Heat of formation + Delta-G solvation = 26.087140 kcal Electronic energy + Delta-G solvation = -27653.331314 eV Core-core repulsion = 23599.435760 eV Total energy + Delta-G solvation = -4053.895554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72154 -38.89739 -38.37115 -38.03733 -35.83346 -34.56978 -34.01171 -33.46403 -31.88349 -31.57353 -30.55361 -28.06673 -27.29596 -25.10192 -24.76679 -23.46702 -22.55264 -21.50750 -19.24186 -18.94066 -18.83754 -18.07625 -17.85875 -16.57413 -16.36744 -16.11610 -15.59338 -15.30486 -14.92793 -14.76293 -14.63205 -14.39432 -14.20401 -13.69011 -13.25673 -12.97143 -12.93622 -12.90417 -12.57086 -12.45145 -12.09710 -11.95496 -11.77409 -11.59884 -11.43686 -11.30188 -11.10666 -11.05633 -11.00507 -10.70206 -10.56086 -10.41531 -10.36196 -10.20678 -9.56668 -9.47915 -9.21191 -8.61674 -8.52501 -7.99844 -6.46503 -3.95369 -0.13020 0.39496 1.48031 2.60260 2.95068 3.15399 3.24355 3.27039 3.59451 3.67556 3.76846 3.85821 4.01511 4.02199 4.15813 4.25493 4.44121 4.60331 4.78104 4.83408 4.92907 4.95795 5.07454 5.24544 5.29784 5.36928 5.40811 5.53874 5.61100 5.74504 5.78807 5.83540 5.92250 5.97555 6.02097 6.08900 6.24171 6.30386 6.50840 6.55751 6.67170 6.77310 6.97308 7.51038 7.93153 7.95534 8.33152 8.77860 9.05366 9.24771 9.79945 10.59771 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019155 B = 0.002167 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.429401 B =12918.994354 C =13208.387806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.246 3.754 3 C 0.222 3.778 4 N -0.446 5.446 5 C -0.313 4.313 6 H 0.107 0.893 7 C 0.031 3.969 8 N -0.879 5.879 9 Si 0.927 3.073 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.457 3.543 14 O -0.574 6.574 15 C -0.134 4.134 16 C -0.089 4.089 17 C -0.056 4.056 18 C 0.361 3.639 19 N -0.536 5.536 20 C 0.405 3.595 21 O -0.469 6.469 22 C -0.184 4.184 23 C -0.067 4.067 24 C -0.128 4.128 25 C -0.078 4.078 26 C -0.103 4.103 27 C 0.175 3.825 28 N -0.507 5.507 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.273 0.727 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.410 0.590 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 -8.796 -23.272 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.072 4.072 3 C 0.094 3.906 4 N -0.167 5.167 5 C -0.440 4.440 6 H 0.125 0.875 7 C -0.172 4.172 8 N -0.518 5.518 9 Si 0.753 3.247 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.246 3.754 14 O -0.456 6.456 15 C -0.174 4.174 16 C -0.128 4.128 17 C -0.095 4.095 18 C 0.093 3.907 19 N -0.261 5.261 20 C 0.204 3.796 21 O -0.276 6.276 22 C -0.190 4.190 23 C -0.088 4.088 24 C -0.146 4.146 25 C -0.099 4.099 26 C -0.122 4.122 27 C 0.048 3.952 28 N -0.222 5.222 29 H 0.144 0.856 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.270 0.730 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.619 -8.713 -21.924 23.647 hybrid contribution 0.843 -0.399 0.115 0.940 sum 2.462 -9.112 -21.809 23.764 Atomic orbital electron populations 1.80893 1.13634 1.08469 1.12413 1.29341 0.95396 0.92557 0.89912 1.18734 0.81563 0.89390 1.00924 1.43652 1.56820 1.07793 1.08407 1.19666 1.29936 1.13629 0.80792 0.87534 1.25261 0.95024 0.97196 0.99754 1.69855 1.19882 1.26774 1.35265 0.85976 0.79484 0.78310 0.80881 1.19731 1.21070 1.19889 1.20158 0.83562 0.84633 0.87079 1.90548 1.50104 1.22964 1.82006 1.21587 1.02612 0.98902 0.94305 1.21173 1.03075 0.98131 0.90429 1.20627 1.03780 0.91094 0.94037 1.23052 0.82491 0.94802 0.90372 1.67768 1.23419 1.23258 1.11629 1.19632 0.83598 0.87510 0.88844 1.84651 1.27893 1.78952 1.36138 1.19611 0.95361 0.99445 1.04606 1.20867 0.99558 0.92057 0.96297 1.20993 0.93189 0.99907 1.00551 1.21085 0.97460 0.96564 0.94795 1.20806 0.98668 0.93137 0.99566 1.18976 0.91920 0.92524 0.91817 1.68706 1.33197 1.03087 1.17200 0.85586 0.89736 0.91643 0.89693 0.90098 0.90884 0.91016 0.88775 0.88790 0.73010 0.84508 0.85045 0.84740 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.27 18.54 42.15 0.78 -10.48 16 2 C 0.25 5.42 12.95 -20.76 -0.27 5.15 16 3 C 0.22 4.35 4.91 -6.83 -0.03 4.32 16 4 N -0.45 -10.47 2.60 -117.93 -0.31 -10.78 16 5 C -0.31 -8.17 9.32 -14.93 -0.14 -8.31 16 6 H 0.11 2.95 7.39 -52.49 -0.39 2.56 16 7 C 0.03 0.77 4.87 -17.46 -0.08 0.69 16 8 N -0.88 -22.36 9.48 55.50 0.53 -21.84 16 9 Si 0.93 19.91 29.60 -169.99 -5.03 14.87 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 13 C 0.46 10.42 7.57 -10.98 -0.08 10.34 16 14 O -0.57 -15.31 15.63 5.54 0.09 -15.23 16 15 C -0.13 -2.26 4.30 -27.88 -0.12 -2.38 16 16 C -0.09 -1.46 4.49 -26.73 -0.12 -1.58 16 17 C -0.06 -0.74 5.62 -27.88 -0.16 -0.90 16 18 C 0.36 5.23 6.88 -157.21 -1.08 4.15 16 19 N -0.54 -7.53 10.30 -10.40 -0.11 -7.64 16 20 C 0.41 4.79 7.89 -16.09 -0.13 4.66 16 21 O -0.47 -4.06 12.94 -17.54 -0.23 -4.29 16 22 C -0.18 -2.07 5.75 -106.72 -0.61 -2.69 16 23 C -0.07 -0.54 9.61 -39.60 -0.38 -0.92 16 24 C -0.13 -0.86 9.96 -39.89 -0.40 -1.26 16 25 C -0.08 -0.56 9.95 -39.91 -0.40 -0.96 16 26 C -0.10 -1.03 10.01 -39.56 -0.40 -1.43 16 27 C 0.18 2.24 6.61 -84.85 -0.56 1.68 16 28 N -0.51 -7.47 10.32 -8.80 -0.09 -7.56 16 29 H 0.13 2.54 6.46 -51.93 -0.34 2.21 16 30 H 0.08 1.24 6.68 -51.93 -0.35 0.89 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.08 1.15 7.41 -51.93 -0.39 0.77 16 33 H 0.08 1.33 7.51 -51.93 -0.39 0.94 16 34 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 35 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.41 1.20 9.06 45.56 0.41 1.61 16 39 H 0.14 0.77 7.72 -52.49 -0.41 0.36 16 40 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -35.68 368.61 -7.70 -43.38 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -3.93 Total: 3.43 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: -4.96 Total: 10.57 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.80 Total: -58.30 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.14 Total: -19.51 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.68 -7.70 -43.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355711492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.470 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds