Wall clock time and date at job start Sat Apr 11 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35714 * 117.00100 * 2 1 4 4 C 1.39372 * 120.18430 * 89.99718 * 3 2 1 5 5 N 1.40013 * 120.01944 * 359.97438 * 4 3 2 6 6 C 1.34770 * 119.99983 * 214.24887 * 5 4 3 7 7 O 1.21609 * 119.99996 * 355.82449 * 6 5 4 8 8 C 1.47595 * 120.00145 * 175.83241 * 6 5 4 9 9 C 1.40037 * 119.89757 * 179.97438 * 8 6 5 10 10 C 1.36305 * 120.10527 * 180.24823 * 9 8 6 11 11 C 1.40899 * 119.89131 * 359.50500 * 10 9 8 12 12 C 1.41081 * 120.10148 * 180.24985 * 11 10 9 13 13 H 1.08005 * 120.00153 * 214.94387 * 12 11 10 14 14 C 1.40231 * 120.00396 * 34.93962 * 12 11 10 15 15 N 1.30647 * 119.99554 * 355.70643 * 14 12 11 16 16 Si 1.86799 * 120.00263 * 175.70690 * 14 12 11 17 17 H 1.48496 * 109.47040 * 59.99915 * 16 14 12 18 18 H 1.48508 * 109.46809 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47012 * 299.99740 * 16 14 12 20 20 C 1.40899 * 119.79526 * 0.51584 * 11 10 9 21 21 C 1.36297 * 119.89497 * 359.73642 * 20 11 10 22 22 C 1.38623 * 119.95122 * 179.72820 * 4 3 2 23 23 C 1.38472 * 120.31834 * 0.24885 * 22 4 3 24 24 C 1.37794 * 120.36877 * 0.02562 * 23 22 4 25 25 C 1.39809 * 120.03863 * 359.97438 * 24 23 22 26 26 C 1.47540 * 120.15275 * 180.02562 * 25 24 23 27 27 N 1.34774 * 120.00572 * 0.02562 * 26 25 24 28 28 O 1.21595 * 119.99971 * 180.02562 * 26 25 24 29 29 H 1.08996 * 109.47263 * 300.00170 * 1 2 3 30 30 H 1.09004 * 109.46466 * 60.00344 * 1 2 3 31 31 H 1.08997 * 109.47363 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00019 * 34.25221 * 5 4 3 33 33 H 1.08001 * 119.94765 * 359.97438 * 9 8 6 34 34 H 1.07997 * 120.05232 * 179.72314 * 10 9 8 35 35 H 0.96996 * 119.99910 * 179.97438 * 15 14 12 36 36 H 1.08006 * 120.05354 * 179.70736 * 20 11 10 37 37 H 1.08006 * 119.94773 * 179.97438 * 21 20 11 38 38 H 1.08000 * 119.83801 * 180.27278 * 22 4 3 39 39 H 1.08000 * 119.81755 * 180.02562 * 23 22 4 40 40 H 1.08000 * 119.97560 * 180.02562 * 24 23 22 41 41 H 0.97007 * 119.99572 * 0.02562 * 27 26 25 42 42 H 0.97001 * 120.00424 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 2.3632 1.8336 1.2047 5 7 2.0468 1.2139 2.4198 6 6 1.6897 1.9601 3.4838 7 8 1.7154 3.1737 3.4115 8 6 1.2675 1.3042 4.7368 9 6 0.8973 2.0815 5.8412 10 6 0.5116 1.4803 7.0020 11 6 0.4756 0.0743 7.0863 12 6 0.0720 -0.5527 8.2840 13 1 0.5302 -1.4823 8.5879 14 6 -0.9240 0.0311 9.0800 15 7 -1.4186 1.1964 8.7570 16 14 -1.5434 -0.8572 10.6020 17 1 -0.4146 -1.0747 11.5420 18 1 -2.5883 -0.0353 11.2639 19 1 -2.1204 -2.1681 10.2096 20 6 0.8494 -0.7037 5.9726 21 6 1.2387 -0.0936 4.8177 22 6 2.9977 3.0661 1.1991 23 6 3.3133 3.6843 0.0009 24 6 2.9998 3.0815 -1.1978 25 6 2.3600 1.8385 -1.2098 26 6 2.0237 1.1905 -2.4919 27 7 2.3337 1.7964 -3.6551 28 8 1.4667 0.1096 -2.4991 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 2.0847 0.2477 2.4958 33 1 0.9218 3.1592 5.7745 34 1 0.2306 2.0806 7.8547 35 1 -2.1078 1.6001 9.3073 36 1 0.8279 -1.7818 6.0341 37 1 1.5258 -0.6891 3.9635 38 1 3.2473 3.5463 2.1338 39 1 3.8080 4.6444 0.0060 40 1 3.2493 3.5692 -2.1286 41 1 2.7783 2.6586 -3.6494 42 1 2.1129 1.3702 -4.4980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359882741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:58 Heat of formation + Delta-G solvation = -60.552482 kcal Electronic energy + Delta-G solvation = -28282.628608 eV Core-core repulsion = 24192.683328 eV Total energy + Delta-G solvation = -4089.945281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87578 -39.54249 -38.36415 -37.43330 -36.94941 -34.48664 -33.92444 -33.70826 -30.75232 -30.37887 -29.83004 -28.99405 -26.82920 -25.94493 -24.32071 -22.78116 -21.86933 -21.20001 -20.68945 -19.60944 -18.57401 -17.78938 -17.53597 -17.29143 -16.65011 -16.02448 -15.73245 -15.56944 -15.28699 -14.94317 -14.57192 -14.48248 -14.16029 -14.09103 -13.91676 -13.51120 -13.26161 -12.82542 -12.55833 -12.35863 -12.23979 -12.12415 -11.88279 -11.51732 -11.45138 -11.28749 -11.04243 -10.67172 -10.35304 -10.24426 -10.13171 -9.93131 -9.81317 -9.61513 -9.45323 -9.17737 -8.84065 -8.05679 -7.80045 -7.51879 -6.93314 -4.70659 0.69294 1.07275 2.06714 2.77417 2.88948 2.94460 2.95195 2.97478 3.18544 3.43319 3.51521 3.69425 3.76953 4.00353 4.52387 4.62230 4.73647 4.95536 5.22939 5.29499 5.42373 5.43737 5.46103 5.55123 5.78264 5.81369 5.87724 5.93692 6.15504 6.21534 6.25116 6.45232 6.56943 6.75498 6.78349 6.87195 6.95019 7.02862 7.11086 7.38467 7.48476 7.52111 7.63155 7.81280 7.94260 8.03953 8.09401 8.38945 8.58799 8.66857 8.74243 9.94877 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.002356 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.253631 B =11880.103090 C =12657.942759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.318 6.318 3 C 0.121 3.879 4 C 0.141 3.859 5 N -0.677 5.677 6 C 0.571 3.429 7 O -0.553 6.553 8 C -0.276 4.276 9 C -0.037 4.037 10 C -0.171 4.171 11 C 0.127 3.873 12 C -0.445 4.445 13 H 0.083 0.917 14 C 0.068 3.932 15 N -0.786 5.786 16 Si 0.922 3.078 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.263 1.263 20 C -0.223 4.223 21 C -0.055 4.055 22 C -0.088 4.088 23 C -0.114 4.114 24 C -0.102 4.102 25 C -0.150 4.150 26 C 0.564 3.436 27 N -0.855 5.855 28 O -0.522 6.522 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.414 0.586 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.286 0.714 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.152 0.848 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.399 0.601 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 3.069 -16.472 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.234 6.234 3 C 0.073 3.927 4 C 0.045 3.955 5 N -0.322 5.322 6 C 0.368 3.632 7 O -0.433 6.433 8 C -0.281 4.281 9 C -0.057 4.057 10 C -0.191 4.191 11 C 0.124 3.876 12 C -0.473 4.473 13 H 0.101 0.899 14 C -0.151 4.151 15 N -0.411 5.411 16 Si 0.746 3.254 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.187 1.187 20 C -0.242 4.242 21 C -0.074 4.074 22 C -0.108 4.108 23 C -0.132 4.132 24 C -0.121 4.121 25 C -0.154 4.154 26 C 0.350 3.650 27 N -0.420 5.420 28 O -0.398 6.398 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.251 0.749 33 H 0.121 0.879 34 H 0.150 0.850 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.170 0.830 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.229 0.771 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.330 3.177 -16.153 17.303 hybrid contribution -0.421 -0.380 0.213 0.606 sum 4.909 2.797 -15.939 16.911 Atomic orbital electron populations 1.22880 0.78109 1.03334 1.00199 1.85944 1.20306 1.23169 1.93952 1.18434 0.97122 0.87298 0.89865 1.18133 0.97841 0.94214 0.85340 1.43591 1.68492 1.11389 1.08693 1.18812 0.74875 0.86444 0.83056 1.90635 1.55164 1.14109 1.83426 1.18835 1.21736 0.93308 0.94193 1.20555 0.94955 0.98090 0.92084 1.21312 1.04722 0.95225 0.97796 1.17877 0.85902 0.92048 0.91778 1.19771 1.16769 1.07077 1.03715 0.89865 1.26094 0.95887 0.94485 0.98619 1.69673 1.21388 1.13948 1.36042 0.86129 0.79111 0.80050 0.80136 1.18650 1.20074 1.18728 1.20820 1.11358 0.98336 0.93691 1.20408 0.97331 0.92838 0.96798 1.21583 0.94876 0.94279 1.00098 1.21003 1.00485 1.00319 0.91436 1.21073 0.98876 0.93627 0.98562 1.19969 1.06444 0.96400 0.92609 1.18064 0.78248 0.84696 0.83959 1.43754 1.64676 1.25341 1.08228 1.90859 1.41065 1.20430 1.87463 0.93801 0.93561 0.88748 0.74859 0.87927 0.84980 0.90285 0.88144 0.89053 0.83023 0.84899 0.85511 0.77138 0.76617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.68 10.48 101.05 1.06 1.74 16 2 O -0.32 -5.03 8.40 -40.75 -0.34 -5.37 16 3 C 0.12 1.83 5.75 -38.52 -0.22 1.61 16 4 C 0.14 2.24 6.32 -83.56 -0.53 1.71 16 5 N -0.68 -11.50 5.14 -10.69 -0.05 -11.55 16 6 C 0.57 11.52 7.60 -12.45 -0.09 11.43 16 7 O -0.55 -12.10 13.73 5.27 0.07 -12.02 16 8 C -0.28 -6.02 5.89 -104.73 -0.62 -6.64 16 9 C -0.04 -0.88 9.52 -39.60 -0.38 -1.25 16 10 C -0.17 -4.24 8.61 -39.27 -0.34 -4.57 16 11 C 0.13 3.15 5.55 -106.81 -0.59 2.55 16 12 C -0.44 -10.84 9.03 -37.76 -0.34 -11.18 16 13 H 0.08 1.91 7.85 -52.48 -0.41 1.50 16 14 C 0.07 1.59 5.42 -17.31 -0.09 1.50 16 15 N -0.79 -18.99 10.60 55.56 0.59 -18.40 16 16 Si 0.92 17.38 29.56 -169.99 -5.03 12.35 16 17 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 18 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 20 C -0.22 -4.99 9.73 -39.27 -0.38 -5.37 16 21 C -0.05 -1.12 9.47 -39.61 -0.38 -1.50 16 22 C -0.09 -1.27 8.69 -39.35 -0.34 -1.61 16 23 C -0.11 -1.24 10.02 -39.66 -0.40 -1.63 16 24 C -0.10 -0.99 9.53 -39.16 -0.37 -1.37 16 25 C -0.15 -1.91 5.88 -104.87 -0.62 -2.52 16 26 C 0.56 6.92 8.04 -12.47 -0.10 6.82 16 27 N -0.85 -6.13 8.82 30.46 0.27 -5.87 16 28 O -0.52 -8.31 14.80 -16.62 -0.25 -8.55 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.64 7.47 -51.93 -0.39 0.25 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.41 6.48 6.57 -40.82 -0.27 6.22 16 33 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 34 H 0.13 3.38 6.15 -52.49 -0.32 3.05 16 35 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 36 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 37 H 0.09 1.57 6.38 -52.48 -0.33 1.24 16 38 H 0.15 2.43 6.17 -52.49 -0.32 2.10 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.13 0.71 6.40 -52.49 -0.34 0.38 16 41 H 0.40 1.69 6.86 -40.82 -0.28 1.41 16 42 H 0.40 2.31 8.93 -40.82 -0.36 1.94 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -30.45 359.00 -8.32 -38.77 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -4.25 Total: 15.52 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -4.73 Total: -10.28 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.80 Total: -35.83 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.52 Total: -25.94 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.45 -8.32 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359882741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.785 kcal (2) G-P(sol) polarization free energy of solvation -30.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds