Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35714 * 117.00100 * 2 1 4 4 C 1.39372 * 120.18430 * 89.99718 * 3 2 1 5 5 N 1.40013 * 120.01944 * 359.97438 * 4 3 2 6 6 C 1.34770 * 119.99983 * 214.24887 * 5 4 3 7 7 O 1.21609 * 119.99996 * 355.82449 * 6 5 4 8 8 C 1.47595 * 120.00145 * 175.83241 * 6 5 4 9 9 C 1.40037 * 119.89757 * 179.97438 * 8 6 5 10 10 C 1.36305 * 120.10527 * 180.24823 * 9 8 6 11 11 C 1.40899 * 119.89131 * 359.50500 * 10 9 8 12 12 C 1.41081 * 120.10148 * 180.24985 * 11 10 9 13 13 H 1.08005 * 120.00153 * 214.94387 * 12 11 10 14 14 C 1.40231 * 120.00396 * 34.93962 * 12 11 10 15 15 N 1.30647 * 119.99554 * 355.70643 * 14 12 11 16 16 Si 1.86799 * 120.00263 * 175.70690 * 14 12 11 17 17 H 1.48496 * 109.47040 * 59.99915 * 16 14 12 18 18 H 1.48508 * 109.46809 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47012 * 299.99740 * 16 14 12 20 20 C 1.40899 * 119.79526 * 0.51584 * 11 10 9 21 21 C 1.36297 * 119.89497 * 359.73642 * 20 11 10 22 22 C 1.38623 * 119.95122 * 179.72820 * 4 3 2 23 23 C 1.38472 * 120.31834 * 0.24885 * 22 4 3 24 24 C 1.37794 * 120.36877 * 0.02562 * 23 22 4 25 25 C 1.39809 * 120.03863 * 359.97438 * 24 23 22 26 26 C 1.47540 * 120.15275 * 180.02562 * 25 24 23 27 27 N 1.34774 * 120.00572 * 0.02562 * 26 25 24 28 28 O 1.21595 * 119.99971 * 180.02562 * 26 25 24 29 29 H 1.08996 * 109.47263 * 300.00170 * 1 2 3 30 30 H 1.09004 * 109.46466 * 60.00344 * 1 2 3 31 31 H 1.08997 * 109.47363 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00019 * 34.25221 * 5 4 3 33 33 H 1.08001 * 119.94765 * 359.97438 * 9 8 6 34 34 H 1.07997 * 120.05232 * 179.72314 * 10 9 8 35 35 H 0.96996 * 119.99910 * 179.97438 * 15 14 12 36 36 H 1.08006 * 120.05354 * 179.70736 * 20 11 10 37 37 H 1.08006 * 119.94773 * 179.97438 * 21 20 11 38 38 H 1.08000 * 119.83801 * 180.27278 * 22 4 3 39 39 H 1.08000 * 119.81755 * 180.02562 * 23 22 4 40 40 H 1.08000 * 119.97560 * 180.02562 * 24 23 22 41 41 H 0.97007 * 119.99572 * 0.02562 * 27 26 25 42 42 H 0.97001 * 120.00424 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 2.3632 1.8336 1.2047 5 7 2.0468 1.2139 2.4198 6 6 1.6897 1.9601 3.4838 7 8 1.7154 3.1737 3.4115 8 6 1.2675 1.3042 4.7368 9 6 0.8973 2.0815 5.8412 10 6 0.5116 1.4803 7.0020 11 6 0.4756 0.0743 7.0863 12 6 0.0720 -0.5527 8.2840 13 1 0.5302 -1.4823 8.5879 14 6 -0.9240 0.0311 9.0800 15 7 -1.4186 1.1964 8.7570 16 14 -1.5434 -0.8572 10.6020 17 1 -0.4146 -1.0747 11.5420 18 1 -2.5883 -0.0353 11.2639 19 1 -2.1204 -2.1681 10.2096 20 6 0.8494 -0.7037 5.9726 21 6 1.2387 -0.0936 4.8177 22 6 2.9977 3.0661 1.1991 23 6 3.3133 3.6843 0.0009 24 6 2.9998 3.0815 -1.1978 25 6 2.3600 1.8385 -1.2098 26 6 2.0237 1.1905 -2.4919 27 7 2.3337 1.7964 -3.6551 28 8 1.4667 0.1096 -2.4991 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 2.0847 0.2477 2.4958 33 1 0.9218 3.1592 5.7745 34 1 0.2306 2.0806 7.8547 35 1 -2.1078 1.6001 9.3073 36 1 0.8279 -1.7818 6.0341 37 1 1.5258 -0.6891 3.9635 38 1 3.2473 3.5463 2.1338 39 1 3.8080 4.6444 0.0060 40 1 3.2493 3.5692 -2.1286 41 1 2.7783 2.6586 -3.6494 42 1 2.1129 1.3702 -4.4980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359882741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = -80.245520 kcal Electronic energy + Delta-G solvation = -28283.482563 eV Core-core repulsion = 24192.683328 eV Total energy + Delta-G solvation = -4090.799235 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.02599 -40.85112 -39.57603 -38.94971 -38.15548 -35.84965 -35.62372 -34.62328 -32.21421 -31.60611 -31.49867 -30.33431 -28.01754 -27.56236 -25.37655 -24.22307 -23.22183 -22.65235 -22.09215 -20.96671 -19.69712 -19.31414 -18.91126 -18.38326 -17.82831 -17.19392 -17.06570 -16.78848 -16.56762 -16.02177 -16.00063 -15.78387 -15.55920 -15.45263 -15.09659 -14.91541 -14.61199 -14.47401 -14.08397 -13.71481 -13.55148 -13.35807 -13.18066 -13.10012 -12.84185 -12.66308 -12.52253 -12.35901 -11.79631 -11.57620 -11.42031 -11.27855 -11.18396 -11.06743 -10.68913 -10.58600 -9.87807 -9.62003 -9.43775 -9.12696 -8.67325 -6.55336 -0.30933 -0.02040 0.42324 1.09918 1.39503 1.43154 1.52014 1.79335 1.97366 2.10070 2.18106 2.46201 2.56232 2.76752 2.96571 3.60331 3.79109 3.88853 3.98059 4.06552 4.24188 4.31233 4.32832 4.34885 4.38696 4.43071 4.59439 4.71876 4.95412 4.99547 5.02419 5.12044 5.16486 5.24425 5.28681 5.42264 5.57951 5.70471 5.71738 5.90220 5.91263 5.99932 6.18882 6.40284 6.44171 6.46158 6.55676 6.77020 6.85226 7.18492 7.33472 8.23335 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.002356 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.253631 B =11880.103090 C =12657.942759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.332 6.332 3 C 0.103 3.897 4 C 0.109 3.891 5 N -0.665 5.665 6 C 0.575 3.425 7 O -0.574 6.574 8 C -0.281 4.281 9 C -0.048 4.048 10 C -0.190 4.190 11 C 0.100 3.900 12 C -0.475 4.475 13 H 0.090 0.910 14 C 0.027 3.973 15 N -0.820 5.820 16 Si 0.994 3.006 17 H -0.256 1.256 18 H -0.270 1.270 19 H -0.258 1.258 20 C -0.232 4.232 21 C -0.045 4.045 22 C -0.103 4.103 23 C -0.104 4.104 24 C -0.075 4.075 25 C -0.159 4.159 26 C 0.561 3.439 27 N -0.827 5.827 28 O -0.566 6.566 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.418 0.582 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.292 0.708 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.170 0.830 40 H 0.180 0.820 41 H 0.417 0.583 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.754 3.265 -19.052 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.248 6.248 3 C 0.056 3.944 4 C 0.014 3.986 5 N -0.309 5.309 6 C 0.371 3.629 7 O -0.457 6.457 8 C -0.285 4.285 9 C -0.067 4.067 10 C -0.210 4.210 11 C 0.097 3.903 12 C -0.503 4.503 13 H 0.108 0.892 14 C -0.189 4.189 15 N -0.445 5.445 16 Si 0.814 3.186 17 H -0.180 1.180 18 H -0.194 1.194 19 H -0.182 1.182 20 C -0.252 4.252 21 C -0.064 4.064 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.094 4.094 25 C -0.163 4.163 26 C 0.347 3.653 27 N -0.393 5.393 28 O -0.446 6.446 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.127 0.873 32 H 0.256 0.744 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.187 0.813 40 H 0.197 0.803 41 H 0.250 0.750 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.295 3.405 -18.812 20.128 hybrid contribution -0.594 -0.311 0.748 1.004 sum 5.701 3.094 -18.065 19.194 Atomic orbital electron populations 1.22901 0.77692 1.04111 0.99546 1.85915 1.20875 1.23979 1.94047 1.18656 0.97809 0.87440 0.90521 1.18323 1.00144 0.95320 0.84809 1.43274 1.67734 1.11325 1.08617 1.18513 0.74912 0.86172 0.83346 1.90619 1.56161 1.14941 1.83940 1.19091 1.20846 0.94020 0.94539 1.20617 0.95361 0.98181 0.92558 1.21228 1.06272 0.95618 0.97864 1.18226 0.86739 0.92248 0.93126 1.20065 1.17914 1.07816 1.04540 0.89202 1.27013 0.95508 0.94998 1.01342 1.69755 1.22008 1.15343 1.37395 0.85048 0.78619 0.78762 0.76134 1.17981 1.19423 1.18198 1.21057 1.11348 0.99180 0.93579 1.20696 0.95758 0.92549 0.97404 1.21615 0.95692 0.94005 1.01016 1.21399 0.99324 1.01272 0.90250 1.21607 0.95582 0.91865 1.00315 1.20228 1.06569 0.97386 0.92103 1.18084 0.78081 0.84310 0.84870 1.43501 1.62988 1.25589 1.07181 1.90844 1.43297 1.22390 1.88056 0.94766 0.93755 0.87344 0.74350 0.88277 0.86682 0.89737 0.86440 0.85419 0.85064 0.81270 0.80285 0.75018 0.75357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.44 10.48 113.37 1.19 2.62 16 2 O -0.33 -10.41 8.40 -69.40 -0.58 -10.99 16 3 C 0.10 3.04 5.75 22.96 0.13 3.17 16 4 C 0.11 3.42 6.32 38.20 0.24 3.66 16 5 N -0.66 -22.68 5.14 -306.00 -1.57 -24.26 16 6 C 0.57 23.62 7.60 86.71 0.66 24.28 16 7 O -0.57 -25.77 13.73 -4.06 -0.06 -25.82 16 8 C -0.28 -12.50 5.89 -19.94 -0.12 -12.62 16 9 C -0.05 -2.34 9.52 22.26 0.21 -2.13 16 10 C -0.19 -9.93 8.61 22.47 0.19 -9.74 16 11 C 0.10 5.11 5.55 -21.28 -0.12 4.99 16 12 C -0.47 -23.79 9.03 23.45 0.21 -23.58 16 13 H 0.09 4.21 7.85 -2.91 -0.02 4.19 16 14 C 0.03 1.29 5.42 85.35 0.46 1.76 16 15 N -0.82 -41.09 10.60 21.87 0.23 -40.86 16 16 Si 0.99 35.78 29.56 68.60 2.03 37.81 16 17 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 18 H -0.27 -9.32 7.11 99.48 0.71 -8.62 16 19 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 20 C -0.23 -10.51 9.73 22.47 0.22 -10.29 16 21 C -0.05 -1.86 9.47 22.25 0.21 -1.65 16 22 C -0.10 -2.87 8.69 22.42 0.19 -2.68 16 23 C -0.10 -1.89 10.02 22.22 0.22 -1.67 16 24 C -0.07 -1.12 9.53 22.54 0.21 -0.90 16 25 C -0.16 -3.62 5.88 -20.03 -0.12 -3.73 16 26 C 0.56 12.31 8.04 86.70 0.70 13.01 16 27 N -0.83 -8.55 8.82 -175.81 -1.55 -10.10 16 28 O -0.57 -17.34 14.80 16.93 0.25 -17.09 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 1.23 7.47 -2.39 -0.02 1.21 16 31 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.42 13.01 6.57 -92.71 -0.61 12.41 16 33 H 0.10 4.80 7.63 -2.91 -0.02 4.77 16 34 H 0.12 6.29 6.15 -2.91 -0.02 6.28 16 35 H 0.29 13.25 8.29 -92.71 -0.77 12.49 16 36 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.13 4.23 6.38 -2.91 -0.02 4.21 16 38 H 0.13 4.23 6.17 -2.91 -0.02 4.21 16 39 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 40 H 0.18 0.76 6.40 -2.91 -0.02 0.74 16 41 H 0.42 1.26 6.86 -92.70 -0.64 0.62 16 42 H 0.41 3.22 8.93 -92.71 -0.83 2.39 16 Total: -1.00 -70.69 359.00 2.51 -68.18 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -0.94 Total: 38.63 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.71 Total: -15.50 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -2.89 Total: -75.21 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -0.39 Total: -53.90 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Total: -70.69 2.51 -68.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359882741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.066 kcal (2) G-P(sol) polarization free energy of solvation -70.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds