Wall clock time and date at job start Sat Apr 11 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35716 * 117.00162 * 2 1 4 4 C 1.39340 * 120.17798 * 270.02229 * 3 2 1 5 5 N 1.40069 * 120.02535 * 0.02562 * 4 3 2 6 6 C 1.34781 * 119.99981 * 151.59567 * 5 4 3 7 7 O 1.21565 * 119.99922 * 4.46092 * 6 5 4 8 8 C 1.47858 * 119.99578 * 184.46068 * 6 5 4 9 9 C 1.39923 * 120.02671 * 359.72737 * 8 6 5 10 10 C 1.38336 * 120.35389 * 179.69448 * 9 8 6 11 11 C 1.37750 * 120.41298 * 0.60669 * 10 9 8 12 12 C 1.40756 * 120.04239 * 359.67063 * 11 10 9 13 13 C 1.41435 * 120.17685 * 180.02562 * 12 11 10 14 14 H 1.07992 * 120.00360 * 332.05639 * 13 12 11 15 15 C 1.39945 * 119.99673 * 152.05319 * 13 12 11 16 16 N 1.30825 * 120.00193 * 347.81691 * 15 13 12 17 17 Si 1.86797 * 119.99769 * 167.81528 * 15 13 12 18 18 H 1.48499 * 109.47302 * 60.00342 * 17 15 13 19 19 H 1.48506 * 109.47098 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47261 * 300.00065 * 17 15 13 21 21 C 1.39006 * 120.02016 * 180.02562 * 8 6 5 22 22 C 1.38609 * 119.95588 * 179.97438 * 4 3 2 23 23 C 1.38498 * 120.31537 * 0.02562 * 22 4 3 24 24 C 1.37773 * 120.36172 * 359.74026 * 23 22 4 25 25 C 1.39808 * 120.04299 * 0.51342 * 24 23 22 26 26 C 1.47540 * 120.15991 * 179.76800 * 25 24 23 27 27 N 1.34773 * 120.00078 * 359.71668 * 26 25 24 28 28 O 1.21594 * 119.99611 * 179.72377 * 26 25 24 29 29 H 1.09001 * 109.46903 * 300.00042 * 1 2 3 30 30 H 1.08994 * 109.47257 * 59.99838 * 1 2 3 31 31 H 1.08999 * 109.47530 * 179.97438 * 1 2 3 32 32 H 0.96993 * 119.99462 * 331.60071 * 5 4 3 33 33 H 1.08004 * 119.82652 * 359.97421 * 9 8 6 34 34 H 1.08000 * 119.78966 * 180.30116 * 10 9 8 35 35 H 1.07998 * 119.97982 * 179.70359 * 11 10 9 36 36 H 0.96997 * 120.00254 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.20631 * 359.97438 * 21 8 6 38 38 H 1.08001 * 119.84279 * 180.02562 * 22 4 3 39 39 H 1.08001 * 119.81636 * 179.97438 * 23 22 4 40 40 H 1.08003 * 119.97733 * 180.25547 * 24 23 22 41 41 H 0.96996 * 120.00128 * 0.02562 * 27 26 25 42 42 H 0.96998 * 119.99826 * 179.72312 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 2.3628 1.8335 -1.2045 5 7 2.0459 1.2138 -2.4201 6 6 1.8033 1.9618 -3.5147 7 8 1.9386 3.1690 -3.4682 8 6 1.3727 1.3139 -4.7721 9 6 1.2223 -0.0761 -4.8278 10 6 0.8137 -0.6887 -5.9989 11 6 0.5622 0.0608 -7.1269 12 6 0.7136 1.4598 -7.0917 13 6 0.4555 2.2321 -8.2481 14 1 0.5855 1.7973 -9.2280 15 6 0.0318 3.5599 -8.1224 16 7 -0.3544 4.0160 -6.9586 17 14 0.0175 4.6811 -9.6164 18 1 -0.8826 4.1139 -10.6524 19 1 -0.4691 6.0272 -9.2205 20 1 1.3932 4.7939 -10.1638 21 6 1.1229 2.0848 -5.9016 22 6 2.9916 3.0688 -1.1992 23 6 3.3073 3.6873 -0.0009 24 6 2.9950 3.0840 1.1977 25 6 2.3655 1.8357 1.2099 26 6 2.0344 1.1849 2.4920 27 7 2.3440 1.7912 3.6551 28 8 1.4824 0.1015 2.4991 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.0009 0.2464 -2.4739 33 1 1.4220 -0.6736 -3.9505 34 1 0.6960 -1.7618 -6.0302 35 1 0.2481 -0.4252 -8.0388 36 1 -0.6477 4.9364 -6.8714 37 1 1.2419 3.1576 -5.8644 38 1 3.2366 3.5512 -2.1339 39 1 3.7977 4.6496 -0.0061 40 1 3.2403 3.5738 2.1285 41 1 2.7841 2.6556 3.6494 42 1 2.1227 1.3652 4.4980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359900615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:01 Heat of formation + Delta-G solvation = -56.133803 kcal Electronic energy + Delta-G solvation = -28592.088531 eV Core-core repulsion = 24502.334859 eV Total energy + Delta-G solvation = -4089.753672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91586 -39.62024 -38.38228 -37.39813 -36.90708 -34.56647 -33.86671 -33.64943 -30.87000 -30.43447 -29.56319 -29.02129 -26.79901 -25.41159 -24.39846 -23.31545 -21.87324 -21.10223 -20.84826 -19.54596 -18.57642 -18.04664 -17.43957 -17.13522 -16.29275 -15.96332 -15.72937 -15.47861 -15.21273 -14.93099 -14.74435 -14.57402 -14.36367 -14.15797 -13.86009 -13.54071 -13.26412 -12.82935 -12.64426 -12.53349 -12.22238 -12.17383 -11.73637 -11.46520 -11.23341 -11.16414 -10.81979 -10.59782 -10.43433 -10.25343 -10.12654 -9.92525 -9.82339 -9.78661 -9.31717 -9.14101 -8.83492 -8.06915 -7.71301 -7.58141 -6.82614 -4.50426 0.70068 1.07048 2.04472 2.73749 2.79994 3.03931 3.05666 3.09710 3.14629 3.42583 3.46578 3.67414 3.87573 4.00110 4.56550 4.62952 4.75013 4.95029 5.19347 5.30726 5.38968 5.43099 5.49253 5.53210 5.69746 5.77241 5.93051 5.97466 6.16673 6.19041 6.26400 6.45062 6.57188 6.61849 6.82617 6.88654 6.90865 7.11348 7.13716 7.27350 7.50388 7.55693 7.61755 7.77658 7.90135 8.07986 8.09746 8.41151 8.59513 8.73290 8.75134 10.11570 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002757 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.975523 B =10154.937718 C =11146.667473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.318 6.318 3 C 0.119 3.881 4 C 0.140 3.860 5 N -0.670 5.670 6 C 0.567 3.433 7 O -0.524 6.524 8 C -0.133 4.133 9 C -0.213 4.213 10 C -0.098 4.098 11 C -0.204 4.204 12 C 0.097 3.903 13 C -0.459 4.459 14 H 0.081 0.919 15 C 0.071 3.929 16 N -0.791 5.791 17 Si 0.914 3.086 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.263 1.263 21 C -0.082 4.082 22 C -0.097 4.097 23 C -0.112 4.112 24 C -0.103 4.103 25 C -0.149 4.149 26 C 0.565 3.435 27 N -0.855 5.855 28 O -0.523 6.523 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.416 0.584 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.285 0.715 37 H 0.137 0.863 38 H 0.162 0.838 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.399 0.601 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.020 -0.243 16.018 16.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.234 6.234 3 C 0.071 3.929 4 C 0.043 3.957 5 N -0.314 5.314 6 C 0.360 3.640 7 O -0.402 6.402 8 C -0.136 4.136 9 C -0.233 4.233 10 C -0.116 4.116 11 C -0.224 4.224 12 C 0.095 3.905 13 C -0.489 4.489 14 H 0.099 0.901 15 C -0.147 4.147 16 N -0.416 5.416 17 Si 0.738 3.262 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.188 1.188 21 C -0.102 4.102 22 C -0.117 4.117 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.153 4.153 26 C 0.351 3.649 27 N -0.420 5.420 28 O -0.399 6.399 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.255 0.745 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.155 0.845 38 H 0.179 0.821 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.229 0.771 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.679 -0.079 15.880 16.555 hybrid contribution -0.193 0.477 -0.160 0.539 sum 4.486 0.398 15.719 16.352 Atomic orbital electron populations 1.22894 0.78152 1.03328 1.00274 1.85949 1.20286 1.23199 1.93948 1.18356 0.97438 0.87332 0.89790 1.18180 0.98138 0.94230 0.85168 1.43608 1.69260 1.11378 1.07192 1.19074 0.75092 0.86429 0.83436 1.90634 1.51065 1.14415 1.84041 1.19329 1.07903 0.93899 0.92512 1.20389 1.12431 0.92662 0.97812 1.20458 1.00090 0.97623 0.93434 1.21187 1.09096 0.94606 0.97494 1.17612 0.88813 0.91215 0.92875 1.19558 1.39779 0.95601 0.93920 0.90085 1.25956 0.92688 0.98628 0.97426 1.69739 1.29743 1.17277 1.24815 0.86268 0.79788 0.78752 0.81373 1.18963 1.20221 1.18755 1.21694 0.97030 1.00414 0.91055 1.21857 0.95049 0.94111 1.00700 1.21040 1.00227 1.00355 0.91414 1.21082 0.99026 0.93543 0.98603 1.19946 1.06471 0.96324 0.92560 1.18054 0.78171 0.84743 0.83949 1.43750 1.64846 1.25169 1.08224 1.90856 1.41227 1.20302 1.87469 0.93516 0.93773 0.88735 0.74542 0.89053 0.88620 0.88389 0.90401 0.84511 0.82057 0.84829 0.85508 0.77120 0.76621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 10.49 101.05 1.06 1.72 16 2 O -0.32 -5.00 8.30 -40.76 -0.34 -5.33 16 3 C 0.12 1.81 5.75 -38.53 -0.22 1.59 16 4 C 0.14 2.25 6.42 -83.55 -0.54 1.72 16 5 N -0.67 -11.55 5.20 -10.62 -0.06 -11.61 16 6 C 0.57 11.82 7.65 -12.32 -0.09 11.72 16 7 O -0.52 -11.97 13.37 5.31 0.07 -11.90 16 8 C -0.13 -3.01 5.87 -105.04 -0.62 -3.63 16 9 C -0.21 -4.34 9.55 -38.91 -0.37 -4.71 16 10 C -0.10 -2.02 10.01 -39.72 -0.40 -2.42 16 11 C -0.20 -4.68 9.78 -38.81 -0.38 -5.06 16 12 C 0.10 2.49 5.55 -106.87 -0.59 1.89 16 13 C -0.46 -11.70 9.06 -37.73 -0.34 -12.05 16 14 H 0.08 1.96 7.87 -52.49 -0.41 1.54 16 15 C 0.07 1.75 5.23 -17.34 -0.09 1.66 16 16 N -0.79 -20.35 10.86 55.55 0.60 -19.74 16 17 Si 0.91 18.34 29.58 -169.99 -5.03 13.31 16 18 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 19 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 21 C -0.08 -2.09 8.21 -38.44 -0.32 -2.41 16 22 C -0.10 -1.45 8.75 -39.35 -0.34 -1.80 16 23 C -0.11 -1.27 10.02 -39.66 -0.40 -1.66 16 24 C -0.10 -1.04 9.53 -39.16 -0.37 -1.41 16 25 C -0.15 -1.92 5.88 -104.87 -0.62 -2.53 16 26 C 0.56 6.99 8.04 -12.47 -0.10 6.88 16 27 N -0.85 -6.25 8.82 30.46 0.27 -5.98 16 28 O -0.52 -8.32 14.85 -16.63 -0.25 -8.57 16 29 H 0.05 0.64 7.51 -51.93 -0.39 0.25 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.42 6.57 6.45 -40.82 -0.26 6.31 16 33 H 0.09 1.57 6.39 -52.48 -0.34 1.24 16 34 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 37 H 0.14 3.76 5.79 -52.49 -0.30 3.46 16 38 H 0.16 2.72 5.69 -52.49 -0.30 2.43 16 39 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.13 0.75 6.40 -52.48 -0.34 0.41 16 41 H 0.40 1.76 6.86 -40.82 -0.28 1.48 16 42 H 0.40 2.35 8.93 -40.82 -0.36 1.98 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -31.26 358.72 -8.28 -39.54 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -4.23 Total: 15.36 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -4.73 Total: -10.48 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.82 Total: -37.33 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.51 Total: -25.80 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.26 -8.28 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359900615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.595 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds