Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48493 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46860 * 300.00096 * 3 2 1 6 6 H 1.48498 * 109.46950 * 59.99778 * 3 2 1 7 7 C 1.37872 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00459 * 0.02562 * 7 2 1 10 10 O 1.42908 * 113.41068 * 313.19709 * 9 7 2 11 11 C 1.53502 * 114.20639 * 180.02562 * 9 7 2 12 12 N 1.47070 * 87.97873 * 220.34038 * 11 9 7 13 13 C 1.34777 * 136.05212 * 207.07785 * 12 11 9 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.73146 * 13 12 11 16 16 H 1.09008 * 108.70177 * 298.53314 * 15 13 12 17 17 C 1.54555 * 108.75561 * 56.63598 * 15 13 12 18 18 S 1.84216 * 101.32772 * 97.87328 * 17 15 13 19 19 C 1.84079 * 93.90784 * 32.25867 * 18 17 15 20 20 N 1.45505 * 108.75400 * 180.28033 * 15 13 12 21 21 C 1.34775 * 122.43110 * 57.97303 * 20 15 13 22 22 O 1.21280 * 119.99998 * 0.02562 * 21 20 15 23 23 C 1.50697 * 119.99868 * 179.97438 * 21 20 15 24 24 C 1.53774 * 113.61809 * 279.13564 * 23 21 20 25 25 C 1.53954 * 87.02261 * 220.04840 * 24 23 21 26 26 C 1.53780 * 87.11023 * 25.36260 * 25 24 23 27 27 C 1.47062 * 87.88674 * 27.34302 * 12 11 9 28 28 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 29 29 H 0.96701 * 113.99627 * 46.79870 * 10 9 7 30 30 H 1.08996 * 113.46716 * 105.56433 * 11 9 7 31 31 H 1.08990 * 113.52038 * 335.12915 * 11 9 7 32 32 H 1.08998 * 111.05376 * 215.88582 * 17 15 13 33 33 H 1.09004 * 111.05562 * 339.86165 * 17 15 13 34 34 H 1.09007 * 110.77627 * 208.27918 * 19 18 17 35 35 H 1.08995 * 110.93920 * 84.92416 * 19 18 17 36 36 H 1.09005 * 112.85143 * 50.33494 * 23 21 20 37 37 H 1.09001 * 113.61801 * 334.57334 * 24 23 21 38 38 H 1.09003 * 113.61466 * 105.46804 * 24 23 21 39 39 H 1.09003 * 113.53580 * 270.81473 * 25 24 23 40 40 H 1.08996 * 113.74349 * 139.94239 * 25 24 23 41 41 H 1.08994 * 113.61282 * 220.09197 * 26 25 24 42 42 H 1.08993 * 113.61378 * 89.18400 * 26 25 24 43 43 H 1.08998 * 113.46736 * 87.43474 * 27 12 11 44 44 H 1.08998 * 113.46422 * 217.87103 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.1892 -2.5418 0.9562 11 6 2.1487 -3.7443 0.0018 12 7 1.2104 -4.3578 -0.9501 13 6 0.8361 -5.6119 -1.2721 14 8 1.3303 -6.5587 -0.6974 15 6 -0.2013 -5.8374 -2.3416 16 1 -1.1341 -5.3683 -2.0282 17 6 0.2763 -5.1626 -3.6474 18 16 1.0067 -6.5940 -4.5482 19 6 -0.1794 -7.8085 -3.8365 20 7 -0.4225 -7.2685 -2.4845 21 6 -0.8208 -8.0445 -1.4570 22 8 -1.0085 -7.5539 -0.3639 23 6 -1.0339 -9.5215 -1.6668 24 6 -2.3919 -9.8639 -2.3019 25 6 -2.4520 -11.0601 -1.3346 26 6 -1.5225 -10.2582 -0.4085 27 6 0.8652 -3.0011 -1.4006 28 1 -0.4849 0.8401 0.0004 29 1 -0.3743 -1.7560 0.9532 30 1 2.1842 -4.2528 0.9652 31 1 3.1388 -3.5670 -0.4178 32 1 -0.5631 -4.7397 -4.1993 33 1 1.0305 -4.4028 -3.4424 34 1 0.2692 -8.8005 -3.7817 35 1 -1.1034 -7.8351 -4.4141 36 1 -0.1887 -10.0059 -2.1558 37 1 -3.1615 -9.1143 -2.1177 38 1 -2.3230 -10.1523 -3.3508 39 1 -1.9954 -11.9659 -1.7336 40 1 -3.4423 -11.2351 -0.9142 41 1 -0.7529 -10.8645 0.0690 42 1 -2.0540 -9.6166 0.2943 43 1 1.5169 -2.6270 -2.1902 44 1 -0.1926 -2.8766 -1.6320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370555013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -34.616291 kcal Electronic energy + Delta-G solvation = -28528.328896 eV Core-core repulsion = 24574.952245 eV Total energy + Delta-G solvation = -3953.376652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.75822 -39.56541 -38.14480 -36.84959 -35.87273 -34.05180 -32.21587 -31.81091 -28.52811 -27.48326 -26.95440 -25.83840 -25.49470 -25.11509 -23.51082 -21.08564 -19.86367 -19.16898 -18.46532 -17.71601 -17.52135 -17.13957 -16.67029 -15.72934 -15.58266 -15.27446 -15.18872 -14.81395 -14.46918 -14.30696 -14.03321 -13.66571 -13.51146 -13.12429 -12.99331 -12.77346 -12.65644 -12.45249 -12.33205 -12.24432 -11.99603 -11.84431 -11.57381 -11.33275 -11.10626 -11.00967 -10.74828 -10.64954 -10.57588 -10.49592 -10.28052 -9.80757 -9.59483 -9.35502 -8.84810 -8.68801 -8.38115 -8.04310 -7.83740 -6.42613 -4.53040 1.40379 1.79060 2.48371 2.76394 3.11493 3.12666 3.21660 3.25429 3.52262 4.12976 4.17021 4.30161 4.35750 4.44869 4.59049 4.62695 4.69725 4.81967 4.90537 4.92123 5.15187 5.26227 5.30282 5.41145 5.41992 5.55422 5.58592 5.61596 5.78099 5.87629 5.89874 6.00708 6.17830 6.23428 6.39682 6.42296 6.62201 6.64775 7.08634 7.16375 7.60777 7.78566 8.20220 8.48125 8.52480 8.75578 9.18652 9.49093 10.63881 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.003129 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.824717 B = 8945.760767 C = 9744.253019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.073 0.927 9 C 0.242 3.758 10 O -0.569 6.569 11 C 0.110 3.890 12 N -0.635 5.635 13 C 0.536 3.464 14 O -0.535 6.535 15 C 0.121 3.879 16 H 0.110 0.890 17 C -0.063 4.063 18 S -0.264 6.264 19 C 0.158 3.842 20 N -0.602 5.602 21 C 0.542 3.458 22 O -0.503 6.503 23 C -0.133 4.133 24 C -0.124 4.124 25 C -0.141 4.141 26 C -0.117 4.117 27 C 0.067 3.933 28 H 0.273 0.727 29 H 0.393 0.607 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 -14.791 -10.788 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.091 0.909 9 C 0.200 3.800 10 O -0.382 6.382 11 C -0.012 4.012 12 N -0.370 5.370 13 C 0.322 3.678 14 O -0.411 6.411 15 C 0.011 3.989 16 H 0.127 0.873 17 C -0.211 4.211 18 S -0.039 6.039 19 C -0.076 4.076 20 N -0.340 5.340 21 C 0.329 3.671 22 O -0.375 6.375 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.178 4.178 26 C -0.154 4.154 27 C -0.057 4.057 28 H 0.084 0.916 29 H 0.250 0.750 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.147 0.853 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.911 -15.832 -10.550 19.423 hybrid contribution -0.639 1.653 0.297 1.797 sum -4.550 -14.179 -10.253 18.080 Atomic orbital electron populations 1.69276 1.06196 1.28107 1.50255 1.25083 0.95027 0.99939 0.93030 0.86261 0.80094 0.82193 0.77880 1.19408 1.20670 1.20607 1.21478 0.93969 0.89715 1.51903 0.90864 1.19555 0.85390 0.90987 0.84051 1.86084 1.44928 1.48241 1.58912 1.23309 0.93643 0.92060 0.92213 1.49612 1.42908 1.04287 1.40162 1.19751 0.82969 0.81559 0.83497 1.90643 1.56521 1.40582 1.53404 1.21028 1.00310 0.82564 0.94951 0.87282 1.24626 1.04452 0.97918 0.94137 1.88348 1.47129 1.06073 1.62304 1.24229 0.99474 0.99537 0.84389 1.48215 1.69433 1.06582 1.09729 1.20264 0.75718 0.88229 0.82887 1.90761 1.48789 1.74593 1.23359 1.22778 0.99613 0.91680 1.01329 1.22883 0.95362 0.98700 0.99257 1.22852 1.00535 0.96969 0.97448 1.22804 0.99162 0.97892 0.95587 1.24314 1.00246 0.78087 1.03006 0.91626 0.75035 0.91596 0.89738 0.86958 0.85302 0.86916 0.88387 0.87033 0.89609 0.90672 0.89910 0.90906 0.90882 0.88604 0.90024 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.37 11.01 55.43 0.61 -21.76 16 2 C 0.07 1.75 5.40 -17.82 -0.10 1.66 16 3 Si 0.91 19.15 29.54 -169.99 -5.02 14.12 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.53 -13.14 8.69 -34.44 -0.30 -13.44 16 8 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.24 5.79 1.59 -91.12 -0.14 5.64 16 10 O -0.57 -14.94 13.55 -35.23 -0.48 -15.41 16 11 C 0.11 2.45 8.02 -8.50 -0.07 2.38 16 12 N -0.64 -13.51 3.46 -185.05 -0.64 -14.15 16 13 C 0.54 11.27 6.78 -10.98 -0.07 11.20 16 14 O -0.53 -13.04 15.16 -15.29 -0.23 -13.27 16 15 C 0.12 1.95 2.81 -68.80 -0.19 1.76 16 16 H 0.11 1.80 8.14 -51.92 -0.42 1.37 16 17 C -0.06 -0.81 6.72 37.97 0.26 -0.56 16 18 S -0.26 -3.32 23.43 -107.50 -2.52 -5.84 16 19 C 0.16 1.63 7.21 60.45 0.44 2.07 16 20 N -0.60 -8.72 2.80 -169.15 -0.47 -9.20 16 21 C 0.54 8.63 6.25 -10.99 -0.07 8.56 16 22 O -0.50 -10.53 14.37 -15.29 -0.22 -10.75 16 23 C -0.13 -1.46 3.10 -90.96 -0.28 -1.75 16 24 C -0.12 -1.01 7.64 -25.83 -0.20 -1.20 16 25 C -0.14 -1.08 8.09 -25.83 -0.21 -1.29 16 26 C -0.12 -1.27 7.40 -25.92 -0.19 -1.46 16 27 C 0.07 1.37 6.26 -8.37 -0.05 1.32 16 28 H 0.27 6.45 8.31 -40.82 -0.34 6.12 16 29 H 0.39 10.34 6.33 45.56 0.29 10.63 16 30 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.08 1.71 8.10 -51.93 -0.42 1.29 16 32 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.13 1.81 6.01 -51.93 -0.31 1.50 16 34 H 0.11 0.98 6.94 -51.92 -0.36 0.62 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 1.05 7.30 -51.93 -0.38 0.67 16 37 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 1.24 7.45 -51.93 -0.39 0.85 16 43 H 0.08 1.55 7.88 -51.93 -0.41 1.14 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -32.26 368.09 -10.36 -42.62 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -5.75 Total: 13.18 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: -1.19 Total: 14.90 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.50 Total: -45.10 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.93 Total: -39.43 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -2.52 Total: -5.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.26 -10.36 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370555013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.007 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds