Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48493 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46860 * 300.00096 * 3 2 1 6 6 H 1.48498 * 109.46950 * 59.99778 * 3 2 1 7 7 C 1.37872 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00459 * 0.02562 * 7 2 1 10 10 O 1.42908 * 113.41068 * 313.19709 * 9 7 2 11 11 C 1.53502 * 114.20639 * 180.02562 * 9 7 2 12 12 N 1.47070 * 87.97873 * 220.34038 * 11 9 7 13 13 C 1.34777 * 136.05212 * 207.07785 * 12 11 9 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.73146 * 13 12 11 16 16 H 1.09008 * 108.70177 * 298.53314 * 15 13 12 17 17 C 1.54555 * 108.75561 * 56.63598 * 15 13 12 18 18 S 1.84216 * 101.32772 * 97.87328 * 17 15 13 19 19 C 1.84079 * 93.90784 * 32.25867 * 18 17 15 20 20 N 1.45505 * 108.75400 * 180.28033 * 15 13 12 21 21 C 1.34775 * 122.43110 * 57.97303 * 20 15 13 22 22 O 1.21280 * 119.99998 * 0.02562 * 21 20 15 23 23 C 1.50697 * 119.99868 * 179.97438 * 21 20 15 24 24 C 1.53774 * 113.61809 * 279.13564 * 23 21 20 25 25 C 1.53954 * 87.02261 * 220.04840 * 24 23 21 26 26 C 1.53780 * 87.11023 * 25.36260 * 25 24 23 27 27 C 1.47062 * 87.88674 * 27.34302 * 12 11 9 28 28 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 29 29 H 0.96701 * 113.99627 * 46.79870 * 10 9 7 30 30 H 1.08996 * 113.46716 * 105.56433 * 11 9 7 31 31 H 1.08990 * 113.52038 * 335.12915 * 11 9 7 32 32 H 1.08998 * 111.05376 * 215.88582 * 17 15 13 33 33 H 1.09004 * 111.05562 * 339.86165 * 17 15 13 34 34 H 1.09007 * 110.77627 * 208.27918 * 19 18 17 35 35 H 1.08995 * 110.93920 * 84.92416 * 19 18 17 36 36 H 1.09005 * 112.85143 * 50.33494 * 23 21 20 37 37 H 1.09001 * 113.61801 * 334.57334 * 24 23 21 38 38 H 1.09003 * 113.61466 * 105.46804 * 24 23 21 39 39 H 1.09003 * 113.53580 * 270.81473 * 25 24 23 40 40 H 1.08996 * 113.74349 * 139.94239 * 25 24 23 41 41 H 1.08994 * 113.61282 * 220.09197 * 26 25 24 42 42 H 1.08993 * 113.61378 * 89.18400 * 26 25 24 43 43 H 1.08998 * 113.46736 * 87.43474 * 27 12 11 44 44 H 1.08998 * 113.46422 * 217.87103 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.1892 -2.5418 0.9562 11 6 2.1487 -3.7443 0.0018 12 7 1.2104 -4.3578 -0.9501 13 6 0.8361 -5.6119 -1.2721 14 8 1.3303 -6.5587 -0.6974 15 6 -0.2013 -5.8374 -2.3416 16 1 -1.1341 -5.3683 -2.0282 17 6 0.2763 -5.1626 -3.6474 18 16 1.0067 -6.5940 -4.5482 19 6 -0.1794 -7.8085 -3.8365 20 7 -0.4225 -7.2685 -2.4845 21 6 -0.8208 -8.0445 -1.4570 22 8 -1.0085 -7.5539 -0.3639 23 6 -1.0339 -9.5215 -1.6668 24 6 -2.3919 -9.8639 -2.3019 25 6 -2.4520 -11.0601 -1.3346 26 6 -1.5225 -10.2582 -0.4085 27 6 0.8652 -3.0011 -1.4006 28 1 -0.4849 0.8401 0.0004 29 1 -0.3743 -1.7560 0.9532 30 1 2.1842 -4.2528 0.9652 31 1 3.1388 -3.5670 -0.4178 32 1 -0.5631 -4.7397 -4.1993 33 1 1.0305 -4.4028 -3.4424 34 1 0.2692 -8.8005 -3.7817 35 1 -1.1034 -7.8351 -4.4141 36 1 -0.1887 -10.0059 -2.1558 37 1 -3.1615 -9.1143 -2.1177 38 1 -2.3230 -10.1523 -3.3508 39 1 -1.9954 -11.9659 -1.7336 40 1 -3.4423 -11.2351 -0.9142 41 1 -0.7529 -10.8645 0.0690 42 1 -2.0540 -9.6166 0.2943 43 1 1.5169 -2.6270 -2.1902 44 1 -0.1926 -2.8766 -1.6320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370555013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -56.553276 kcal Electronic energy + Delta-G solvation = -28529.280156 eV Core-core repulsion = 24574.952245 eV Total energy + Delta-G solvation = -3954.327911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.03422 -41.05803 -39.46871 -38.19220 -37.18899 -35.96211 -34.14970 -33.06148 -30.23201 -28.50220 -27.85178 -27.26086 -26.85346 -26.56517 -24.71028 -22.40849 -21.26668 -20.21614 -19.96640 -19.29862 -18.81007 -18.42774 -18.04467 -17.30055 -17.03061 -16.52268 -16.47767 -16.12874 -15.91156 -15.72653 -15.32048 -15.08484 -14.64358 -14.55434 -14.37050 -14.10515 -13.85231 -13.71310 -13.54603 -13.46552 -13.41644 -13.16194 -12.94230 -12.81084 -12.77081 -12.24707 -12.19019 -12.18350 -11.65292 -11.49338 -11.45107 -11.32060 -11.09513 -10.76667 -10.70425 -10.30751 -9.96332 -9.60870 -8.99073 -8.28720 -6.45978 0.46938 0.83237 1.29590 1.45358 1.49307 1.52186 1.60932 1.66938 1.97750 2.39802 2.92367 3.02047 3.23997 3.40108 3.58071 3.64615 3.68155 3.87449 3.88987 3.98198 4.08216 4.14458 4.16028 4.26604 4.31797 4.41279 4.56591 4.64765 4.69508 4.77754 4.81053 4.84110 4.87072 4.98487 5.03046 5.09798 5.15012 5.20418 5.49953 5.71499 5.88745 6.05036 6.60101 6.81545 6.98086 7.12342 7.27968 7.47073 8.77759 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.003129 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.824717 B = 8945.760767 C = 9744.253019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.033 3.967 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.284 1.284 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.220 3.780 10 O -0.589 6.589 11 C 0.107 3.893 12 N -0.637 5.637 13 C 0.525 3.475 14 O -0.575 6.575 15 C 0.126 3.874 16 H 0.103 0.897 17 C -0.055 4.055 18 S -0.281 6.281 19 C 0.161 3.839 20 N -0.603 5.603 21 C 0.532 3.468 22 O -0.568 6.568 23 C -0.133 4.133 24 C -0.111 4.111 25 C -0.123 4.123 26 C -0.133 4.133 27 C 0.087 3.913 28 H 0.277 0.723 29 H 0.389 0.611 30 H 0.041 0.959 31 H 0.105 0.895 32 H 0.147 0.853 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 -15.734 -13.939 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.167 4.167 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.210 1.210 7 C -0.588 4.588 8 H 0.093 0.907 9 C 0.178 3.822 10 O -0.402 6.402 11 C -0.016 4.016 12 N -0.371 5.371 13 C 0.314 3.686 14 O -0.455 6.455 15 C 0.016 3.984 16 H 0.120 0.880 17 C -0.203 4.203 18 S -0.055 6.055 19 C -0.071 4.071 20 N -0.339 5.339 21 C 0.322 3.678 22 O -0.445 6.445 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.161 4.161 26 C -0.171 4.171 27 C -0.035 4.035 28 H 0.087 0.913 29 H 0.245 0.755 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.165 0.835 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.092 0.908 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.121 0.879 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.267 -16.789 -13.763 22.125 hybrid contribution -0.503 1.909 1.367 2.401 sum -4.771 -14.880 -12.396 19.946 Atomic orbital electron populations 1.69331 1.07169 1.28945 1.50281 1.25768 0.95767 1.02668 0.92544 0.85289 0.78902 0.78401 0.77721 1.19159 1.19887 1.20993 1.21654 0.94144 0.90343 1.52694 0.90748 1.19866 0.85332 0.91526 0.85446 1.86071 1.45651 1.48160 1.60313 1.23340 0.94804 0.91565 0.91869 1.49686 1.42667 1.04912 1.39868 1.20738 0.83251 0.80655 0.83971 1.90607 1.58177 1.41642 1.55081 1.21010 0.98049 0.84351 0.95001 0.87952 1.24606 1.05368 0.97668 0.92682 1.88434 1.48598 1.06622 1.61876 1.24679 1.00836 0.99471 0.82109 1.48372 1.68429 1.05812 1.11292 1.21284 0.74277 0.90152 0.82119 1.90728 1.51695 1.76085 1.26028 1.22994 1.02194 0.87978 1.02188 1.22878 0.92599 0.98170 1.01239 1.22831 1.00057 0.97337 0.95830 1.22852 1.00091 0.98354 0.95825 1.24103 1.00772 0.77156 1.01493 0.91298 0.75474 0.94004 0.87695 0.83502 0.86431 0.84648 0.84299 0.84642 0.90825 0.87038 0.87388 0.90328 0.90998 0.91863 0.87898 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.69 11.01 21.45 0.24 -45.45 16 2 C 0.03 1.60 5.40 84.65 0.46 2.06 16 3 Si 0.97 38.81 29.54 68.60 2.03 40.84 16 4 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -27.24 8.69 25.60 0.22 -27.02 16 8 H 0.07 3.58 7.81 -2.91 -0.02 3.55 16 9 C 0.22 10.70 1.59 -11.12 -0.02 10.68 16 10 O -0.59 -32.08 13.55 -148.98 -2.02 -34.10 16 11 C 0.11 4.92 8.02 83.18 0.67 5.59 16 12 N -0.64 -27.68 3.46 -858.25 -2.97 -30.65 16 13 C 0.53 22.62 6.78 87.66 0.59 23.21 16 14 O -0.58 -29.12 15.16 16.89 0.26 -28.86 16 15 C 0.13 4.02 2.81 44.96 0.13 4.15 16 16 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 17 C -0.05 -1.32 6.72 72.51 0.49 -0.83 16 18 S -0.28 -6.33 23.43 -56.49 -1.32 -7.65 16 19 C 0.16 2.76 7.21 127.56 0.92 3.68 16 20 N -0.60 -16.71 2.80 -807.45 -2.26 -18.98 16 21 C 0.53 16.95 6.25 87.66 0.55 17.50 16 22 O -0.57 -25.14 14.37 16.90 0.24 -24.90 16 23 C -0.13 -2.70 3.10 -11.02 -0.03 -2.73 16 24 C -0.11 -1.44 7.64 31.18 0.24 -1.20 16 25 C -0.12 -1.54 8.09 31.18 0.25 -1.29 16 26 C -0.13 -2.87 7.40 31.12 0.23 -2.64 16 27 C 0.09 3.59 6.26 83.27 0.52 4.11 16 28 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 29 H 0.39 21.19 6.33 -74.06 -0.47 20.72 16 30 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.11 4.31 8.10 -2.39 -0.02 4.29 16 32 H 0.15 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.12 3.14 6.01 -2.38 -0.01 3.12 16 34 H 0.14 1.75 6.94 -2.38 -0.02 1.73 16 35 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.14 2.10 7.30 -2.38 -0.02 2.08 16 37 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 38 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 1.77 7.45 -2.39 -0.02 1.75 16 43 H 0.10 3.79 7.88 -2.39 -0.02 3.77 16 44 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -74.55 368.09 -0.04 -74.59 By element: Atomic # 1 Polarization: 39.33 SS G_CDS: 0.56 Total: 39.89 kcal Atomic # 6 Polarization: 30.06 SS G_CDS: 5.21 Total: 35.27 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -5.00 Total: -95.07 kcal Atomic # 8 Polarization: -86.34 SS G_CDS: -1.52 Total: -87.86 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Atomic # 16 Polarization: -6.33 SS G_CDS: -1.32 Total: -7.65 kcal Total: -74.55 -0.04 -74.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370555013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.038 kcal (2) G-P(sol) polarization free energy of solvation -74.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds