Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47389 * 240.00583 * 3 2 1 5 5 H 1.48503 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46960 * 119.99878 * 3 2 1 7 7 C 1.37881 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00035 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99520 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46729 * 180.02562 * 9 7 2 11 11 C 1.34967 * 125.98283 * 124.99721 * 10 9 7 12 12 C 1.35239 * 107.86293 * 179.70358 * 11 10 9 13 13 C 1.40409 * 107.86448 * 0.42691 * 12 11 10 14 14 N 1.40196 * 125.97136 * 179.82120 * 13 12 11 15 15 C 1.34780 * 120.00089 * 359.72732 * 14 13 12 16 16 O 1.21598 * 119.99867 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00089 * 179.97438 * 15 14 13 18 18 C 1.46505 * 119.99775 * 179.97438 * 17 15 14 19 19 C 1.50709 * 109.46856 * 179.97438 * 18 17 15 20 20 C 1.33994 * 126.91014 * 260.02857 * 19 18 17 21 21 O 1.34451 * 110.15467 * 179.73851 * 20 19 18 22 22 C 1.34804 * 110.88681 * 359.97438 * 21 20 19 23 23 C 1.38946 * 133.49086 * 179.97438 * 22 21 20 24 24 C 1.37840 * 119.81990 * 180.02562 * 23 22 21 25 25 C 1.38746 * 120.68452 * 0.02562 * 24 23 22 26 26 C 1.36736 * 120.41652 * 359.97438 * 25 24 23 27 27 C 1.39403 * 119.72057 * 0.04535 * 26 25 24 28 28 N 1.31208 * 108.05723 * 359.56864 * 13 12 11 29 29 H 0.97004 * 119.99853 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47419 * 60.00254 * 9 7 2 31 31 H 1.09004 * 109.47381 * 299.99705 * 9 7 2 32 32 H 1.08001 * 126.06310 * 359.97438 * 11 10 9 33 33 H 1.07998 * 126.07113 * 180.25809 * 12 11 10 34 34 H 0.96996 * 120.00493 * 179.71957 * 14 13 12 35 35 H 0.96993 * 120.00173 * 0.02562 * 17 15 14 36 36 H 1.09003 * 109.47079 * 60.00631 * 18 17 15 37 37 H 1.08988 * 109.47433 * 299.99893 * 18 17 15 38 38 H 1.07996 * 124.91925 * 359.71676 * 20 19 18 39 39 H 1.08004 * 120.08847 * 0.02562 * 23 22 21 40 40 H 1.07999 * 119.66270 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.79228 * 179.97438 * 25 24 23 42 42 H 1.08008 * 120.14267 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2422 -4.6224 0.8941 12 6 3.2567 -5.4461 0.5458 13 6 3.8683 -4.9150 -0.6011 14 7 4.9641 -5.4661 -1.2801 15 6 5.5283 -6.6065 -0.8355 16 8 5.0871 -7.1572 0.1548 17 7 6.5813 -7.1365 -1.4885 18 6 7.1949 -8.3759 -1.0048 19 6 8.3434 -8.7525 -1.9051 20 6 8.3311 -9.6652 -2.8860 21 8 9.5368 -9.7254 -3.4779 22 6 10.3945 -8.8533 -2.9111 23 6 11.7259 -8.5322 -3.1455 24 6 12.3445 -7.5700 -2.3764 25 6 11.6515 -6.9166 -1.3674 26 6 10.3408 -7.2179 -1.1206 27 6 9.6984 -8.1885 -1.8878 28 7 3.2316 -3.8158 -0.9296 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 1.5783 -4.7521 1.7360 33 1 3.5468 -6.3503 1.0601 34 1 5.3162 -5.0267 -2.0699 35 1 6.9335 -6.6971 -2.2782 36 1 6.4530 -9.1745 -1.0096 37 1 7.5623 -8.2273 0.0105 38 1 7.4767 -10.2657 -3.1611 39 1 12.2745 -9.0351 -3.9281 40 1 13.3795 -7.3226 -2.5604 41 1 12.1505 -6.1654 -0.7733 42 1 9.8055 -6.7063 -0.3343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432948906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = 90.754250 kcal Electronic energy + Delta-G solvation = -27070.872732 eV Core-core repulsion = 23019.781354 eV Total energy + Delta-G solvation = -4051.091377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.91765 -40.68564 -39.52554 -38.27145 -35.79901 -34.61787 -33.40022 -32.82334 -30.97748 -30.74748 -29.90794 -29.26215 -27.05477 -26.16299 -23.73550 -23.08984 -22.71754 -21.72683 -20.71809 -20.36877 -19.75904 -18.17590 -17.78314 -17.29403 -16.68686 -16.55197 -16.50891 -16.14566 -15.65203 -15.54861 -14.76019 -14.59003 -14.36534 -14.25855 -14.16195 -13.98200 -13.62937 -12.96208 -12.79244 -12.70393 -12.60397 -12.31871 -12.21508 -12.14692 -11.74487 -11.31588 -11.05303 -10.86001 -10.59820 -10.42502 -10.23938 -10.06007 -9.68180 -9.49353 -9.26202 -9.06056 -8.64448 -8.61348 -8.08035 -7.39343 -6.22689 -4.27678 0.47415 0.94054 1.69443 2.33856 2.56357 2.68189 3.12765 3.26431 3.29576 3.30684 3.34186 3.69050 3.85584 4.00361 4.09268 4.29615 4.40030 4.44496 4.58461 4.67598 4.91813 4.97614 5.08045 5.12250 5.25266 5.33834 5.55835 5.57452 5.78246 5.83014 5.85346 5.96650 6.06276 6.17251 6.21665 6.29388 6.56055 6.59845 6.71454 6.88936 7.02760 7.12667 7.51665 7.71072 7.84126 7.99009 8.08993 8.59077 8.68436 8.82411 9.37689 10.85893 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016483 B = 0.001947 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.342607 B =14375.528776 C =15539.548236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.321 5.321 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.643 5.643 15 C 0.714 3.286 16 O -0.568 6.568 17 N -0.742 5.742 18 C 0.215 3.785 19 C -0.200 4.200 20 C 0.038 3.962 21 O -0.192 6.192 22 C 0.048 3.952 23 C -0.107 4.107 24 C -0.093 4.093 25 C -0.133 4.133 26 C -0.067 4.067 27 C -0.119 4.119 28 N -0.308 5.308 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.407 0.593 35 H 0.398 0.602 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.212 0.788 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.627 -19.506 -5.586 29.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.099 4.099 12 C -0.318 4.318 13 C 0.022 3.978 14 N -0.293 5.293 15 C 0.413 3.587 16 O -0.443 6.443 17 N -0.399 5.399 18 C 0.092 3.908 19 C -0.202 4.202 20 C -0.029 4.029 21 O -0.092 6.092 22 C 0.002 3.998 23 C -0.126 4.126 24 C -0.111 4.111 25 C -0.151 4.151 26 C -0.085 4.085 27 C -0.120 4.120 28 N -0.139 5.139 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.232 0.768 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.229 0.771 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 20.971 -19.007 -5.695 28.871 hybrid contribution 0.677 0.808 -0.157 1.066 sum 21.648 -18.199 -5.852 28.881 Atomic orbital electron populations 1.69911 1.06021 1.27695 1.49752 1.24948 0.94992 0.99530 0.94650 0.86386 0.79374 0.81816 0.78903 1.19963 1.21060 1.20056 1.21221 0.93952 0.89416 1.52055 0.91377 1.19727 0.85616 0.81292 0.99234 1.49054 1.23295 1.19787 1.18119 1.22554 1.00386 0.90194 0.96778 1.21509 1.02088 1.06294 1.01878 1.18783 0.90646 0.94041 0.94373 1.41376 1.31533 1.25001 1.31395 1.15595 0.79982 0.80197 0.82917 1.90875 1.64454 1.62409 1.26573 1.45091 1.33854 1.27986 1.32982 1.19270 0.90297 0.85696 0.95550 1.21101 0.94633 1.02251 1.02244 1.23954 0.86544 0.99432 0.92949 1.84043 1.19746 1.52414 1.53009 1.19636 0.92490 0.92682 0.95037 1.19957 0.89944 1.00315 1.02370 1.20973 1.00079 0.95116 0.94955 1.20845 0.94432 1.00996 0.98872 1.20372 0.94446 0.95414 0.98300 1.19777 0.93422 1.00013 0.98764 1.77328 1.03842 1.16367 1.16364 0.92295 0.93760 0.92549 0.81542 0.82180 0.75883 0.76825 0.90159 0.90245 0.77131 0.85031 0.84723 0.85183 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 13.29 55.43 0.74 -24.67 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.75 9.24 -34.44 -0.32 -15.07 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.26 6.61 6.26 -5.19 -0.03 6.58 16 10 N -0.32 -7.51 3.67 -62.56 -0.23 -7.74 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.75 9.61 -39.83 -0.38 -6.13 16 13 C 0.28 5.58 8.11 -154.36 -1.25 4.33 16 14 N -0.64 -10.03 5.46 -15.50 -0.08 -10.11 16 15 C 0.71 10.35 8.53 -86.92 -0.74 9.61 16 16 O -0.57 -10.06 13.47 5.28 0.07 -9.99 16 17 N -0.74 -7.44 5.55 -66.41 -0.37 -7.81 16 18 C 0.22 1.90 6.22 -5.19 -0.03 1.86 16 19 C -0.20 -1.60 5.72 -102.66 -0.59 -2.19 16 20 C 0.04 0.25 11.89 29.24 0.35 0.60 16 21 O -0.19 -1.65 10.58 3.92 0.04 -1.60 16 22 C 0.05 0.43 7.42 -38.47 -0.29 0.15 16 23 C -0.11 -0.77 10.07 -39.46 -0.40 -1.17 16 24 C -0.09 -0.58 10.01 -39.54 -0.40 -0.98 16 25 C -0.13 -0.93 9.98 -39.94 -0.40 -1.32 16 26 C -0.07 -0.56 10.05 -39.69 -0.40 -0.96 16 27 C -0.12 -1.07 6.38 -105.16 -0.67 -1.74 16 28 N -0.31 -7.14 12.42 31.44 0.39 -6.75 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 33 H 0.16 3.15 5.91 -52.49 -0.31 2.84 16 34 H 0.41 5.18 8.84 -40.82 -0.36 4.82 16 35 H 0.40 3.21 8.48 -40.82 -0.35 2.87 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.77 8.14 -51.94 -0.42 0.35 16 38 H 0.21 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 40 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 371.86 15.07 5.60 5.60 Total: -1.00 -34.45 371.86 -9.49 -43.93 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.79 Total: 6.72 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -5.84 Total: -4.00 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.44 Total: -57.07 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.11 Total: -11.60 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.45 -9.49 -43.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432948906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.689 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds