Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47389 * 240.00583 * 3 2 1 5 5 H 1.48503 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46960 * 119.99878 * 3 2 1 7 7 C 1.37881 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00035 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99520 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46729 * 180.02562 * 9 7 2 11 11 C 1.34967 * 125.98283 * 124.99721 * 10 9 7 12 12 C 1.35239 * 107.86293 * 179.70358 * 11 10 9 13 13 C 1.40409 * 107.86448 * 0.42691 * 12 11 10 14 14 N 1.40196 * 125.97136 * 179.82120 * 13 12 11 15 15 C 1.34780 * 120.00089 * 359.72732 * 14 13 12 16 16 O 1.21598 * 119.99867 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00089 * 179.97438 * 15 14 13 18 18 C 1.46505 * 119.99775 * 179.97438 * 17 15 14 19 19 C 1.50709 * 109.46856 * 179.97438 * 18 17 15 20 20 C 1.33994 * 126.91014 * 260.02857 * 19 18 17 21 21 O 1.34451 * 110.15467 * 179.73851 * 20 19 18 22 22 C 1.34804 * 110.88681 * 359.97438 * 21 20 19 23 23 C 1.38946 * 133.49086 * 179.97438 * 22 21 20 24 24 C 1.37840 * 119.81990 * 180.02562 * 23 22 21 25 25 C 1.38746 * 120.68452 * 0.02562 * 24 23 22 26 26 C 1.36736 * 120.41652 * 359.97438 * 25 24 23 27 27 C 1.39403 * 119.72057 * 0.04535 * 26 25 24 28 28 N 1.31208 * 108.05723 * 359.56864 * 13 12 11 29 29 H 0.97004 * 119.99853 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47419 * 60.00254 * 9 7 2 31 31 H 1.09004 * 109.47381 * 299.99705 * 9 7 2 32 32 H 1.08001 * 126.06310 * 359.97438 * 11 10 9 33 33 H 1.07998 * 126.07113 * 180.25809 * 12 11 10 34 34 H 0.96996 * 120.00493 * 179.71957 * 14 13 12 35 35 H 0.96993 * 120.00173 * 0.02562 * 17 15 14 36 36 H 1.09003 * 109.47079 * 60.00631 * 18 17 15 37 37 H 1.08988 * 109.47433 * 299.99893 * 18 17 15 38 38 H 1.07996 * 124.91925 * 359.71676 * 20 19 18 39 39 H 1.08004 * 120.08847 * 0.02562 * 23 22 21 40 40 H 1.07999 * 119.66270 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.79228 * 179.97438 * 25 24 23 42 42 H 1.08008 * 120.14267 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2422 -4.6224 0.8941 12 6 3.2567 -5.4461 0.5458 13 6 3.8683 -4.9150 -0.6011 14 7 4.9641 -5.4661 -1.2801 15 6 5.5283 -6.6065 -0.8355 16 8 5.0871 -7.1572 0.1548 17 7 6.5813 -7.1365 -1.4885 18 6 7.1949 -8.3759 -1.0048 19 6 8.3434 -8.7525 -1.9051 20 6 8.3311 -9.6652 -2.8860 21 8 9.5368 -9.7254 -3.4779 22 6 10.3945 -8.8533 -2.9111 23 6 11.7259 -8.5322 -3.1455 24 6 12.3445 -7.5700 -2.3764 25 6 11.6515 -6.9166 -1.3674 26 6 10.3408 -7.2179 -1.1206 27 6 9.6984 -8.1885 -1.8878 28 7 3.2316 -3.8158 -0.9296 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 1.5783 -4.7521 1.7360 33 1 3.5468 -6.3503 1.0601 34 1 5.3162 -5.0267 -2.0699 35 1 6.9335 -6.6971 -2.2782 36 1 6.4530 -9.1745 -1.0096 37 1 7.5623 -8.2273 0.0105 38 1 7.4767 -10.2657 -3.1611 39 1 12.2745 -9.0351 -3.9281 40 1 13.3795 -7.3226 -2.5604 41 1 12.1505 -6.1654 -0.7733 42 1 9.8055 -6.7063 -0.3343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432948906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = 69.142718 kcal Electronic energy + Delta-G solvation = -27071.809878 eV Core-core repulsion = 23019.781354 eV Total energy + Delta-G solvation = -4052.028524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.49243 -42.19562 -40.84361 -38.80240 -36.76879 -36.03481 -35.26257 -33.71166 -32.58136 -31.40420 -30.92528 -30.49587 -28.64774 -27.29801 -24.94764 -24.27606 -23.27798 -23.03451 -21.93588 -21.52501 -21.01752 -19.28198 -18.68181 -18.34773 -18.27651 -17.80412 -17.26808 -17.02061 -16.83009 -16.56889 -16.33514 -15.88509 -15.56647 -15.41641 -15.05747 -14.72838 -14.59550 -14.45894 -14.19123 -13.78395 -13.67706 -13.55162 -13.27489 -13.23059 -12.93228 -12.73264 -12.70338 -12.27142 -12.06614 -11.85711 -11.65107 -11.40725 -11.26955 -10.98018 -10.71076 -10.23870 -9.70725 -9.62839 -9.20032 -9.03668 -8.31619 -6.45776 -0.06534 0.36894 0.93811 1.10589 1.38653 1.40670 1.43437 1.49976 1.72001 1.82258 2.19539 2.37502 2.42422 2.75445 2.99710 3.22697 3.47236 3.49235 3.87377 3.98944 4.10088 4.16460 4.29989 4.40008 4.45305 4.56898 4.63342 4.69710 4.80005 4.92028 4.96930 4.97758 5.03822 5.13384 5.24327 5.31949 5.39721 5.45008 5.53205 5.57647 5.67994 5.76900 5.88621 5.99118 6.15595 6.31230 6.64597 6.75626 7.15629 7.23878 7.42103 8.75486 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016483 B = 0.001947 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.342607 B =14375.528776 C =15539.548236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.285 3.715 14 N -0.637 5.637 15 C 0.714 3.286 16 O -0.599 6.599 17 N -0.720 5.720 18 C 0.220 3.780 19 C -0.216 4.216 20 C 0.053 3.947 21 O -0.201 6.201 22 C 0.024 3.976 23 C -0.113 4.113 24 C -0.093 4.093 25 C -0.135 4.135 26 C -0.088 4.088 27 C -0.136 4.136 28 N -0.349 5.349 29 H 0.272 0.728 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.201 0.799 33 H 0.168 0.832 34 H 0.420 0.580 35 H 0.410 0.590 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.247 0.753 39 H 0.150 0.850 40 H 0.163 0.837 41 H 0.148 0.852 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.359 -20.006 -5.995 31.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.092 4.092 12 C -0.323 4.323 13 C 0.029 3.971 14 N -0.289 5.289 15 C 0.414 3.586 16 O -0.477 6.477 17 N -0.376 5.376 18 C 0.097 3.903 19 C -0.218 4.218 20 C -0.013 4.013 21 O -0.101 6.101 22 C -0.022 4.022 23 C -0.132 4.132 24 C -0.111 4.111 25 C -0.153 4.153 26 C -0.107 4.107 27 C -0.137 4.137 28 N -0.180 5.180 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.218 0.782 33 H 0.185 0.815 34 H 0.257 0.743 35 H 0.246 0.754 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.262 0.738 39 H 0.167 0.833 40 H 0.181 0.819 41 H 0.166 0.834 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 22.756 -19.536 -6.138 30.613 hybrid contribution 0.256 0.821 -0.052 0.862 sum 23.012 -18.714 -6.190 30.300 Atomic orbital electron populations 1.69990 1.07180 1.28795 1.49920 1.25747 0.95869 1.02721 0.93952 0.85409 0.78288 0.77889 0.78894 1.19865 1.19797 1.19492 1.21370 0.93357 0.90995 1.52810 0.92984 1.19329 0.85681 0.81504 0.98101 1.48813 1.23937 1.20393 1.19586 1.23160 1.00531 0.88807 0.96727 1.21689 1.02139 1.06494 1.01988 1.19080 0.90820 0.92977 0.94193 1.41390 1.30501 1.25368 1.31615 1.15714 0.80515 0.79666 0.82728 1.90846 1.65625 1.63145 1.28070 1.44997 1.32085 1.27991 1.32564 1.19276 0.90695 0.85045 0.95260 1.20975 0.94071 1.03512 1.03242 1.24602 0.86606 0.98529 0.91604 1.84047 1.20314 1.52481 1.53297 1.19976 0.93332 0.93319 0.95599 1.20325 0.89569 1.00437 1.02838 1.21340 1.01302 0.94315 0.94144 1.21156 0.94040 1.01084 0.99024 1.20508 0.95328 0.96046 0.98777 1.20009 0.94067 1.00433 0.99151 1.77248 1.04972 1.18201 1.17579 0.91855 0.96076 0.92339 0.78231 0.81474 0.74349 0.75412 0.89237 0.91268 0.73754 0.83259 0.81911 0.83441 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.36 13.29 21.45 0.28 -52.07 16 2 C 0.02 0.97 5.46 84.66 0.46 1.43 16 3 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.07 9.24 25.60 0.24 -30.83 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.27 14.26 6.26 85.63 0.54 14.80 16 10 N -0.35 -16.39 3.67 -351.85 -1.29 -17.68 16 11 C 0.06 2.24 11.44 83.52 0.96 3.20 16 12 C -0.29 -11.57 9.61 22.11 0.21 -11.36 16 13 C 0.28 11.50 8.11 133.31 1.08 12.58 16 14 N -0.64 -19.44 5.46 -321.22 -1.75 -21.19 16 15 C 0.71 20.05 8.53 179.06 1.53 21.57 16 16 O -0.60 -20.79 13.47 -4.02 -0.05 -20.85 16 17 N -0.72 -13.56 5.55 -482.28 -2.68 -16.23 16 18 C 0.22 3.64 6.22 85.63 0.53 4.17 16 19 C -0.22 -3.20 5.72 -18.59 -0.11 -3.31 16 20 C 0.05 0.61 11.89 66.85 0.79 1.40 16 21 O -0.20 -3.18 10.58 -8.90 -0.09 -3.27 16 22 C 0.02 0.41 7.42 22.99 0.17 0.58 16 23 C -0.11 -1.47 10.07 22.35 0.23 -1.24 16 24 C -0.09 -0.99 10.01 22.30 0.22 -0.77 16 25 C -0.14 -1.71 9.98 22.04 0.22 -1.49 16 26 C -0.09 -1.44 10.05 22.20 0.22 -1.21 16 27 C -0.14 -2.36 6.38 -20.21 -0.13 -2.49 16 28 N -0.35 -16.39 12.42 -54.43 -0.68 -17.06 16 29 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 2.98 8.07 -2.38 -0.02 2.96 16 32 H 0.20 6.30 8.06 -2.91 -0.02 6.27 16 33 H 0.17 6.44 5.91 -2.91 -0.02 6.42 16 34 H 0.42 10.36 8.84 -92.71 -0.82 9.54 16 35 H 0.41 6.02 8.48 -92.71 -0.79 5.23 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.25 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 41 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 42 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -74.68 371.86 2.42 -72.27 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -0.51 Total: 23.26 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 7.16 Total: 7.04 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -6.11 Total: -124.23 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.15 Total: -24.12 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -74.68 2.42 -72.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432948906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.408 kcal (2) G-P(sol) polarization free energy of solvation -74.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds