Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99714 * 2 1 4 4 C 1.52998 * 109.46659 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47318 * 65.00459 * 4 3 2 6 6 C 1.37103 * 120.00056 * 264.68927 * 5 4 3 7 7 H 1.07995 * 119.99769 * 51.76143 * 6 5 4 8 8 C 1.38952 * 119.99905 * 231.76478 * 6 5 4 9 9 N 1.31413 * 119.99964 * 18.75926 * 8 6 5 10 10 Si 1.86797 * 120.00115 * 198.76040 * 8 6 5 11 11 H 1.48498 * 109.46813 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47044 * 119.99877 * 10 8 6 13 13 H 1.48497 * 109.46975 * 239.99970 * 10 8 6 14 14 C 1.34771 * 120.00228 * 84.68656 * 5 4 3 15 15 O 1.21298 * 119.99945 * 5.35167 * 14 5 4 16 16 C 1.50702 * 120.00598 * 185.35644 * 14 5 4 17 17 H 1.09003 * 109.46353 * 307.21388 * 16 14 5 18 18 C 1.52999 * 109.47139 * 67.21020 * 16 14 5 19 19 C 1.50700 * 109.47602 * 187.21917 * 16 14 5 20 20 C 1.38217 * 120.00555 * 299.99742 * 19 16 14 21 21 C 1.38224 * 120.02194 * 179.97438 * 20 19 16 22 22 C 1.38268 * 120.05340 * 359.97438 * 21 20 19 23 23 N 1.47996 * 119.99201 * 180.02562 * 22 21 20 24 24 O 1.21806 * 120.00133 * 359.97438 * 23 22 21 25 25 O 1.21801 * 120.00292 * 180.02562 * 23 22 21 26 26 C 1.38185 * 120.02418 * 359.97438 * 22 21 20 27 27 C 1.38435 * 120.01243 * 119.97212 * 19 16 14 28 28 F 1.35097 * 120.03201 * 0.02562 * 27 19 16 29 29 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46952 * 299.99170 * 1 2 3 31 31 H 1.09001 * 109.47432 * 59.99202 * 1 2 3 32 32 H 1.08998 * 109.46731 * 60.00738 * 3 2 1 33 33 H 1.08990 * 109.47465 * 300.00120 * 3 2 1 34 34 H 1.09001 * 109.47649 * 305.00364 * 4 3 2 35 35 H 1.09001 * 109.47229 * 185.00655 * 4 3 2 36 36 H 0.97002 * 119.99920 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.46976 * 182.25234 * 18 16 14 38 38 H 1.08998 * 109.47335 * 302.25157 * 18 16 14 39 39 H 1.09005 * 109.46803 * 62.25648 * 18 16 14 40 40 H 1.07997 * 119.99304 * 359.97438 * 20 19 16 41 41 H 1.07996 * 119.97851 * 179.71684 * 21 20 19 42 42 H 1.07994 * 120.01040 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2017 -0.7867 -1.3061 7 1 3.4444 -1.4749 -0.9608 8 6 5.4052 -1.2706 -1.8044 9 7 6.4515 -0.4790 -1.8782 10 14 5.5357 -3.0463 -2.3693 11 1 4.2264 -3.7220 -2.1843 12 1 5.9124 -3.0824 -3.8053 13 1 6.5720 -3.7457 -1.5680 14 6 4.1583 1.3222 -2.3522 15 8 4.0529 2.5285 -2.2818 16 6 4.4935 0.6708 -3.6692 17 1 5.3544 0.0146 -3.5412 18 6 3.2952 -0.1486 -4.1525 19 6 4.8189 1.7335 -4.6870 20 6 3.8741 2.6868 -5.0171 21 6 4.1724 3.6620 -5.9501 22 6 5.4160 3.6854 -6.5539 23 7 5.7341 4.7305 -7.5524 24 8 4.9002 5.5696 -7.8425 25 8 6.8295 4.7510 -8.0847 26 6 6.3625 2.7339 -6.2247 27 6 6.0642 1.7555 -5.2912 28 9 6.9884 0.8241 -4.9693 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8515 0.5681 0.8409 35 1 3.9785 2.1765 0.0890 36 1 7.2916 -0.8167 -2.2264 37 1 3.5514 -0.6518 -5.0848 38 1 3.0349 -0.8913 -3.3984 39 1 2.4455 0.5137 -4.3188 40 1 2.9025 2.6698 -4.5458 41 1 3.4321 4.4038 -6.2109 42 1 7.3339 2.7526 -6.6961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457207386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -93.646414 kcal Electronic energy + Delta-G solvation = -30896.076097 eV Core-core repulsion = 26373.926531 eV Total energy + Delta-G solvation = -4522.149566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.78825 -42.08985 -39.77086 -38.51978 -37.23502 -36.49420 -34.78987 -34.02407 -32.07760 -30.85584 -30.26113 -28.98522 -26.37642 -26.03733 -24.95301 -23.78580 -23.05551 -22.50210 -21.08366 -19.41354 -19.37492 -18.67882 -17.47476 -17.23520 -16.46680 -16.25996 -16.06686 -15.89316 -15.54908 -15.50071 -15.03993 -14.78917 -14.52672 -14.14430 -14.03776 -13.69051 -13.19079 -12.97146 -12.64392 -12.41800 -12.25580 -12.10394 -11.87331 -11.56812 -11.48399 -11.39972 -11.36759 -11.29254 -11.17011 -11.08379 -10.99593 -10.72982 -10.62926 -10.56234 -10.35912 -9.29731 -9.24626 -9.06349 -8.85418 -8.40211 -7.48965 -6.55963 -4.33895 -0.08198 0.97728 1.44234 1.45891 3.01332 3.13962 3.16724 3.30172 3.82716 3.97648 4.11783 4.23154 4.42723 4.52886 4.70056 4.77431 4.88019 5.00179 5.20164 5.44547 5.50318 5.59054 5.64434 5.72696 5.75509 5.83680 5.86200 5.88531 5.93622 6.01022 6.11592 6.18142 6.29845 6.32660 6.51260 6.61854 6.63998 6.79985 6.92692 7.36212 7.56778 7.72667 7.80035 8.54247 8.75803 9.38132 9.80383 10.48587 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.004210 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.862324 B = 6649.545407 C = 8123.681595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.372 6.372 3 C 0.052 3.948 4 C 0.115 3.885 5 N -0.438 5.438 6 C -0.329 4.329 7 H 0.093 0.907 8 C 0.044 3.956 9 N -0.854 5.854 10 Si 0.899 3.101 11 H -0.262 1.262 12 H -0.274 1.274 13 H -0.278 1.278 14 C 0.523 3.477 15 O -0.610 6.610 16 C -0.087 4.087 17 H 0.144 0.856 18 C -0.135 4.135 19 C -0.022 4.022 20 C -0.058 4.058 21 C -0.069 4.069 22 C -0.033 4.033 23 N 0.036 4.964 24 O -0.164 6.164 25 O -0.168 6.168 26 C -0.101 4.101 27 C 0.111 3.889 28 F -0.114 7.114 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.274 0.726 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 0.908 -3.531 7.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.291 6.291 3 C -0.025 4.025 4 C -0.008 4.008 5 N -0.157 5.157 6 C -0.457 4.457 7 H 0.111 0.889 8 C -0.162 4.162 9 N -0.490 5.490 10 Si 0.724 3.276 11 H -0.186 1.186 12 H -0.200 1.200 13 H -0.204 1.204 14 C 0.313 3.687 15 O -0.496 6.496 16 C -0.108 4.108 17 H 0.161 0.839 18 C -0.192 4.192 19 C -0.024 4.024 20 C -0.076 4.076 21 C -0.089 4.089 22 C -0.116 4.116 23 N 0.554 4.446 24 O -0.379 6.379 25 O -0.382 6.382 26 C -0.121 4.121 27 C 0.091 3.909 28 F -0.092 7.092 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.066 0.934 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.427 0.771 -3.003 7.136 hybrid contribution 0.485 -0.501 -0.346 0.778 sum -5.942 0.270 -3.349 6.826 Atomic orbital electron populations 1.22655 0.82780 1.01985 0.99095 1.88048 1.18020 1.27864 1.95152 1.23024 0.95868 0.84433 0.99219 1.21431 0.90507 0.99146 0.89757 1.43086 1.59586 1.07630 1.05364 1.19441 1.00164 0.81007 1.45138 0.88926 1.25629 0.94563 0.99090 0.96918 1.69991 1.00768 1.37122 1.41083 0.86289 0.79133 0.83111 0.79035 1.18590 1.19981 1.20393 1.19706 0.78009 0.85957 0.85047 1.90524 1.57915 1.14847 1.86297 1.20681 1.04061 0.95395 0.90633 0.83919 1.21726 0.95473 1.00393 1.01606 1.20466 0.91290 0.96523 0.94119 1.20939 1.00759 0.91781 0.94155 1.21035 0.94256 0.99046 0.94513 1.20610 0.97866 0.94238 0.98895 1.43534 1.00101 1.00849 1.00122 1.94513 1.43773 1.32774 1.66853 1.94522 1.10024 1.80018 1.53672 1.20721 1.00729 0.92940 0.97736 1.17131 0.87394 0.89254 0.97125 1.91593 1.63963 1.62424 1.91188 0.90218 0.94967 0.94747 0.93941 0.93548 0.90413 0.90585 0.91583 0.93162 0.88827 0.93414 0.82851 0.82817 0.82269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.52 10.25 -35.23 -0.36 -6.88 16 3 C 0.05 0.90 6.24 37.16 0.23 1.13 16 4 C 0.12 2.32 5.77 -4.04 -0.02 2.29 16 5 N -0.44 -9.90 2.39 -114.81 -0.27 -10.18 16 6 C -0.33 -7.58 6.76 -14.93 -0.10 -7.68 16 7 H 0.09 2.16 7.72 -52.49 -0.40 1.75 16 8 C 0.04 1.02 3.45 -17.47 -0.06 0.96 16 9 N -0.85 -21.13 11.49 55.50 0.64 -20.49 16 10 Si 0.90 18.09 29.59 -169.99 -5.03 13.06 16 11 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 12 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 14 C 0.52 11.88 6.19 -10.99 -0.07 11.82 16 15 O -0.61 -14.63 14.50 5.54 0.08 -14.55 16 16 C -0.09 -1.76 1.99 -92.92 -0.18 -1.95 16 17 H 0.14 3.21 3.49 -51.93 -0.18 3.03 16 18 C -0.13 -2.33 8.88 37.16 0.33 -2.00 16 19 C -0.02 -0.41 4.48 -104.56 -0.47 -0.88 16 20 C -0.06 -0.92 7.83 -39.59 -0.31 -1.23 16 21 C -0.07 -1.00 9.55 -39.58 -0.38 -1.38 16 22 C -0.03 -0.51 6.85 -79.97 -0.55 -1.06 16 23 N 0.04 0.58 4.45 33.95 0.15 0.73 16 24 O -0.16 -2.63 18.45 -29.46 -0.54 -3.17 16 25 O -0.17 -2.76 18.45 -29.46 -0.54 -3.30 16 26 C -0.10 -1.59 9.54 -39.51 -0.38 -1.96 16 27 C 0.11 1.97 7.25 -39.42 -0.29 1.69 16 28 F -0.11 -2.16 16.19 2.25 0.04 -2.12 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.55 8.00 -51.93 -0.42 1.13 16 35 H 0.08 1.55 7.52 -51.93 -0.39 1.16 16 36 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.73 6.32 -51.93 -0.33 1.40 16 39 H 0.05 0.73 7.31 -51.93 -0.38 0.35 16 40 H 0.15 2.30 7.33 -52.49 -0.38 1.92 16 41 H 0.15 1.85 7.61 -52.49 -0.40 1.45 16 42 H 0.16 2.20 7.61 -52.49 -0.40 1.80 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -27.27 362.94 -6.46 -33.73 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.95 Total: 6.42 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -1.13 Total: 1.28 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 0.51 Total: -29.94 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -1.37 Total: -27.90 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.27 -6.46 -33.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457207386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.912 kcal (2) G-P(sol) polarization free energy of solvation -27.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds