Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99714 * 2 1 4 4 C 1.52998 * 109.46659 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47318 * 65.00459 * 4 3 2 6 6 C 1.37103 * 120.00056 * 264.68927 * 5 4 3 7 7 H 1.07995 * 119.99769 * 51.76143 * 6 5 4 8 8 C 1.38952 * 119.99905 * 231.76478 * 6 5 4 9 9 N 1.31413 * 119.99964 * 18.75926 * 8 6 5 10 10 Si 1.86797 * 120.00115 * 198.76040 * 8 6 5 11 11 H 1.48498 * 109.46813 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47044 * 119.99877 * 10 8 6 13 13 H 1.48497 * 109.46975 * 239.99970 * 10 8 6 14 14 C 1.34771 * 120.00228 * 84.68656 * 5 4 3 15 15 O 1.21298 * 119.99945 * 5.35167 * 14 5 4 16 16 C 1.50702 * 120.00598 * 185.35644 * 14 5 4 17 17 H 1.09003 * 109.46353 * 307.21388 * 16 14 5 18 18 C 1.52999 * 109.47139 * 67.21020 * 16 14 5 19 19 C 1.50700 * 109.47602 * 187.21917 * 16 14 5 20 20 C 1.38217 * 120.00555 * 299.99742 * 19 16 14 21 21 C 1.38224 * 120.02194 * 179.97438 * 20 19 16 22 22 C 1.38268 * 120.05340 * 359.97438 * 21 20 19 23 23 N 1.47996 * 119.99201 * 180.02562 * 22 21 20 24 24 O 1.21806 * 120.00133 * 359.97438 * 23 22 21 25 25 O 1.21801 * 120.00292 * 180.02562 * 23 22 21 26 26 C 1.38185 * 120.02418 * 359.97438 * 22 21 20 27 27 C 1.38435 * 120.01243 * 119.97212 * 19 16 14 28 28 F 1.35097 * 120.03201 * 0.02562 * 27 19 16 29 29 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46952 * 299.99170 * 1 2 3 31 31 H 1.09001 * 109.47432 * 59.99202 * 1 2 3 32 32 H 1.08998 * 109.46731 * 60.00738 * 3 2 1 33 33 H 1.08990 * 109.47465 * 300.00120 * 3 2 1 34 34 H 1.09001 * 109.47649 * 305.00364 * 4 3 2 35 35 H 1.09001 * 109.47229 * 185.00655 * 4 3 2 36 36 H 0.97002 * 119.99920 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.46976 * 182.25234 * 18 16 14 38 38 H 1.08998 * 109.47335 * 302.25157 * 18 16 14 39 39 H 1.09005 * 109.46803 * 62.25648 * 18 16 14 40 40 H 1.07997 * 119.99304 * 359.97438 * 20 19 16 41 41 H 1.07996 * 119.97851 * 179.71684 * 21 20 19 42 42 H 1.07994 * 120.01040 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2017 -0.7867 -1.3061 7 1 3.4444 -1.4749 -0.9608 8 6 5.4052 -1.2706 -1.8044 9 7 6.4515 -0.4790 -1.8782 10 14 5.5357 -3.0463 -2.3693 11 1 4.2264 -3.7220 -2.1843 12 1 5.9124 -3.0824 -3.8053 13 1 6.5720 -3.7457 -1.5680 14 6 4.1583 1.3222 -2.3522 15 8 4.0529 2.5285 -2.2818 16 6 4.4935 0.6708 -3.6692 17 1 5.3544 0.0146 -3.5412 18 6 3.2952 -0.1486 -4.1525 19 6 4.8189 1.7335 -4.6870 20 6 3.8741 2.6868 -5.0171 21 6 4.1724 3.6620 -5.9501 22 6 5.4160 3.6854 -6.5539 23 7 5.7341 4.7305 -7.5524 24 8 4.9002 5.5696 -7.8425 25 8 6.8295 4.7510 -8.0847 26 6 6.3625 2.7339 -6.2247 27 6 6.0642 1.7555 -5.2912 28 9 6.9884 0.8241 -4.9693 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8515 0.5681 0.8409 35 1 3.9785 2.1765 0.0890 36 1 7.2916 -0.8167 -2.2264 37 1 3.5514 -0.6518 -5.0848 38 1 3.0349 -0.8913 -3.3984 39 1 2.4455 0.5137 -4.3188 40 1 2.9025 2.6698 -4.5458 41 1 3.4321 4.4038 -6.2109 42 1 7.3339 2.7526 -6.6961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457207386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -106.937224 kcal Electronic energy + Delta-G solvation = -30896.652429 eV Core-core repulsion = 26373.926531 eV Total energy + Delta-G solvation = -4522.725899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.18972 -43.35601 -41.26965 -39.96597 -38.55844 -37.76526 -36.52586 -35.46806 -33.76175 -32.11539 -31.65870 -30.44299 -27.67497 -27.24788 -26.63451 -25.21320 -24.35705 -23.88303 -22.51824 -21.08686 -20.66867 -19.95383 -18.83156 -18.72632 -17.91919 -17.62841 -17.45899 -17.31547 -16.93801 -16.90565 -16.55618 -16.20174 -16.08998 -15.58163 -15.36333 -15.13962 -14.59718 -14.43512 -14.08448 -13.76173 -13.71588 -13.40832 -13.19240 -13.06464 -12.97670 -12.85388 -12.78840 -12.75510 -12.58766 -12.45918 -12.35788 -12.16666 -12.11204 -11.99943 -11.90280 -10.76804 -10.54287 -10.51530 -10.29200 -10.04476 -9.24140 -8.33811 -6.15968 -1.35632 -0.28082 0.16244 0.18461 1.39627 1.48358 1.58347 2.00392 2.14052 2.31114 2.81898 2.90801 2.97858 3.08858 3.25845 3.41301 3.49794 3.74939 3.95715 4.16381 4.27561 4.30254 4.39634 4.44385 4.52521 4.54287 4.60423 4.62332 4.67423 4.71785 4.79345 4.87142 4.89221 5.01020 5.04348 5.06228 5.31766 5.34807 5.45714 5.54803 6.04512 6.37376 6.44781 6.74630 6.98687 7.63524 8.05701 8.70638 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.004210 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.862324 B = 6649.545407 C = 8123.681595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.066 3.934 4 C 0.109 3.891 5 N -0.448 5.448 6 C -0.329 4.329 7 H 0.089 0.911 8 C 0.017 3.983 9 N -0.885 5.885 10 Si 0.949 3.051 11 H -0.251 1.251 12 H -0.273 1.273 13 H -0.284 1.284 14 C 0.514 3.486 15 O -0.630 6.630 16 C -0.087 4.087 17 H 0.122 0.878 18 C -0.129 4.129 19 C -0.040 4.040 20 C -0.056 4.056 21 C -0.052 4.052 22 C -0.036 4.036 23 N 0.036 4.964 24 O -0.153 6.153 25 O -0.181 6.181 26 C -0.092 4.092 27 C 0.092 3.908 28 F -0.128 7.128 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.271 0.729 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.163 0.837 41 H 0.184 0.816 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.230 1.058 -4.301 9.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.012 4.012 4 C -0.015 4.015 5 N -0.166 5.166 6 C -0.457 4.457 7 H 0.106 0.894 8 C -0.186 4.186 9 N -0.522 5.522 10 Si 0.773 3.227 11 H -0.174 1.174 12 H -0.198 1.198 13 H -0.210 1.210 14 C 0.304 3.696 15 O -0.518 6.518 16 C -0.108 4.108 17 H 0.140 0.860 18 C -0.187 4.187 19 C -0.042 4.042 20 C -0.075 4.075 21 C -0.070 4.070 22 C -0.120 4.120 23 N 0.554 4.446 24 O -0.372 6.372 25 O -0.393 6.393 26 C -0.112 4.112 27 C 0.072 3.928 28 F -0.106 7.106 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.181 0.819 41 H 0.201 0.799 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.073 0.900 -3.767 8.954 hybrid contribution 0.931 -0.477 -0.064 1.048 sum -7.142 0.423 -3.832 8.116 Atomic orbital electron populations 1.22874 0.80317 1.03410 1.00348 1.87991 1.20721 1.27865 1.95394 1.22787 0.93561 0.84738 1.00115 1.21524 0.92931 0.98199 0.88827 1.43288 1.59485 1.07702 1.06140 1.19465 0.99996 0.81265 1.45007 0.89356 1.26157 0.94029 1.01882 0.96580 1.70078 1.01183 1.38700 1.42267 0.85521 0.79241 0.79487 0.78454 1.17386 1.19777 1.20996 1.20157 0.77634 0.85868 0.85931 1.90484 1.58939 1.15572 1.86812 1.20567 1.04166 0.95893 0.90187 0.86045 1.21696 0.95055 1.00116 1.01811 1.20476 0.92221 0.97105 0.94402 1.21018 1.00659 0.91449 0.94360 1.21296 0.94260 0.98592 0.92897 1.20710 0.98257 0.94081 0.98909 1.43568 1.00065 1.00873 1.00122 1.94505 1.43601 1.32569 1.66511 1.94534 1.10224 1.80337 1.54158 1.20790 1.01448 0.92096 0.96820 1.17276 0.87268 0.89939 0.98309 1.91552 1.64442 1.63100 1.91502 0.88800 0.92993 0.94126 0.91061 0.94436 0.90939 0.91646 0.91891 0.91335 0.90264 0.91611 0.81919 0.79880 0.80820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.40 -13.54 10.25 -148.98 -1.53 -15.07 16 3 C 0.07 2.19 6.24 71.98 0.45 2.64 16 4 C 0.11 4.41 5.77 86.38 0.50 4.91 16 5 N -0.45 -20.47 2.39 -635.54 -1.52 -21.99 16 6 C -0.33 -15.27 6.76 84.04 0.57 -14.70 16 7 H 0.09 4.13 7.72 -2.91 -0.02 4.10 16 8 C 0.02 0.79 3.45 84.93 0.29 1.08 16 9 N -0.89 -44.77 11.49 21.66 0.25 -44.53 16 10 Si 0.95 37.07 29.59 68.60 2.03 39.10 16 11 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 12 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 13 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 14 C 0.51 23.52 6.19 87.66 0.54 24.06 16 15 O -0.63 -30.41 14.50 -3.08 -0.04 -30.46 16 16 C -0.09 -3.53 1.99 -12.29 -0.02 -3.56 16 17 H 0.12 5.54 3.49 -2.39 -0.01 5.53 16 18 C -0.13 -4.37 8.88 71.98 0.64 -3.73 16 19 C -0.04 -1.46 4.48 -19.82 -0.09 -1.55 16 20 C -0.06 -1.70 7.83 22.26 0.17 -1.52 16 21 C -0.05 -1.36 9.55 22.27 0.21 -1.14 16 22 C -0.04 -1.06 6.85 36.37 0.25 -0.81 16 23 N 0.04 1.07 4.45 -46.49 -0.21 0.87 16 24 O -0.15 -4.51 18.45 18.88 0.35 -4.16 16 25 O -0.18 -5.67 18.45 18.88 0.35 -5.32 16 26 C -0.09 -2.77 9.54 22.32 0.21 -2.56 16 27 C 0.09 3.25 7.25 22.38 0.16 3.42 16 28 F -0.13 -4.96 16.19 44.97 0.73 -4.23 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 2.94 8.00 -2.39 -0.02 2.92 16 35 H 0.07 2.74 7.52 -2.39 -0.02 2.72 16 36 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.08 2.89 6.32 -2.39 -0.02 2.87 16 39 H 0.06 1.93 7.31 -2.38 -0.02 1.91 16 40 H 0.16 4.57 7.33 -2.91 -0.02 4.55 16 41 H 0.18 3.71 7.61 -2.91 -0.02 3.69 16 42 H 0.17 4.62 7.61 -2.91 -0.02 4.60 16 Total: -1.00 -58.44 362.94 6.61 -51.83 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 1.07 Total: 25.53 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 5.14 Total: 8.42 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: -1.48 Total: -65.65 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -0.88 Total: -55.00 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.73 Total: -4.23 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -58.44 6.61 -51.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457207386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.103 kcal (2) G-P(sol) polarization free energy of solvation -58.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds