Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46994 * 240.92260 * 3 2 1 5 5 C 1.36930 * 120.00111 * 263.91806 * 4 3 2 6 6 H 1.08002 * 120.00142 * 199.38718 * 5 4 3 7 7 C 1.38817 * 119.99985 * 19.38147 * 5 4 3 8 8 N 1.31613 * 119.99808 * 22.29942 * 7 5 4 9 9 Si 1.86799 * 120.00135 * 202.29882 * 7 5 4 10 10 H 1.48501 * 109.47012 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47539 * 119.99890 * 9 7 5 12 12 H 1.48504 * 109.47159 * 240.00183 * 9 7 5 13 13 C 1.46501 * 120.00100 * 83.91098 * 4 3 2 14 14 C 1.50703 * 109.46659 * 89.99896 * 13 4 3 15 15 C 1.34698 * 126.07696 * 95.00316 * 14 13 4 16 16 O 1.34687 * 107.26513 * 180.02562 * 15 14 13 17 17 C 1.34453 * 107.67932 * 359.97438 * 16 15 14 18 18 C 1.47727 * 125.71964 * 179.97438 * 17 16 15 19 19 C 1.39730 * 119.99706 * 0.02562 * 18 17 16 20 20 C 1.37594 * 120.00624 * 180.02562 * 19 18 17 21 21 C 1.39785 * 119.99846 * 359.97438 * 20 19 18 22 22 C 1.47601 * 120.00886 * 180.02562 * 21 20 19 23 23 O 1.21482 * 119.99851 * 0.02562 * 22 21 20 24 24 O 1.34737 * 119.99686 * 179.72764 * 22 21 20 25 25 C 1.45205 * 116.99924 * 180.28030 * 24 22 21 26 26 C 1.39791 * 119.98270 * 0.27930 * 21 20 19 27 27 C 1.37601 * 119.99186 * 359.41766 * 26 21 20 28 28 N 1.31249 * 108.55559 * 0.24542 * 17 16 15 29 29 H 4.40644 * 5.51318 * 179.97438 * 4 1 2 30 30 H 1.08995 * 109.47169 * 120.92221 * 3 2 1 31 31 H 1.09000 * 109.47274 * 0.91836 * 3 2 1 32 32 H 0.97003 * 119.99995 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47353 * 330.00575 * 13 4 3 34 34 H 1.08991 * 109.47511 * 209.99817 * 13 4 3 35 35 H 1.08002 * 126.37347 * 359.97438 * 15 14 13 36 36 H 1.08001 * 119.99209 * 359.97438 * 19 18 17 37 37 H 1.08001 * 120.00179 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47296 * 180.02562 * 25 24 22 39 39 H 1.09003 * 109.46373 * 299.99844 * 25 24 22 40 40 H 1.08999 * 109.47544 * 59.99175 * 25 24 22 41 41 H 1.07997 * 120.00060 * 179.72230 * 26 21 20 42 42 H 1.08000 * 119.99747 * 180.32166 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.6721 1.2072 5 6 3.4802 1.9962 1.1617 6 1 4.1184 2.4142 1.9261 7 6 3.0108 2.8013 0.1328 8 7 1.9264 2.4578 -0.5292 9 14 3.9182 4.3723 -0.3120 10 1 5.0977 4.5311 0.5762 11 1 4.3684 4.3008 -1.7253 12 1 3.0097 5.5344 -0.1401 13 6 3.2517 -0.0729 2.4631 14 6 4.6242 -0.6884 2.5553 15 6 5.6911 -0.1573 3.1832 16 8 6.7150 -1.0188 3.0295 17 6 6.2654 -2.0637 2.3127 18 6 7.0620 -3.2417 1.9127 19 6 8.4061 -3.3347 2.2830 20 6 9.1484 -4.4316 1.9101 21 6 8.5576 -5.4534 1.1612 22 6 9.3535 -6.6304 0.7615 23 8 10.5219 -6.7115 1.0838 24 8 8.7823 -7.6178 0.0443 25 6 9.6233 -8.7478 -0.3082 26 6 7.2143 -5.3577 0.7863 27 6 6.4708 -4.2634 1.1649 28 7 5.0018 -1.8588 2.0231 29 1 -1.0501 0.0000 -0.0003 30 1 3.0092 0.5289 -0.8816 31 1 3.0099 -1.0267 -0.0165 32 1 1.5982 3.0205 -1.2478 33 1 2.4981 -0.8600 2.4906 34 1 3.1002 0.6047 3.3031 35 1 5.7204 0.7845 3.7109 36 1 8.8626 -2.5450 2.8613 37 1 10.1872 -4.5035 2.1967 38 1 9.0418 -9.4680 -0.8836 39 1 10.4659 -8.4008 -0.9065 40 1 9.9939 -9.2224 0.6004 41 1 6.7588 -6.1448 0.2039 42 1 5.4316 -4.1919 0.8797 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491789484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = 55.455137 kcal Electronic energy + Delta-G solvation = -27496.157981 eV Core-core repulsion = 23411.243168 eV Total energy + Delta-G solvation = -4084.914813 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.96035 -40.84775 -39.02635 -36.74594 -36.34841 -34.44894 -32.86854 -31.57152 -31.50927 -31.13988 -29.37560 -28.04067 -26.44568 -25.83811 -24.77758 -23.13528 -22.07136 -21.97597 -20.78911 -20.28011 -18.40345 -17.59138 -17.43199 -17.18496 -16.68374 -16.41232 -16.26481 -15.76336 -15.20475 -15.00852 -14.89896 -14.14621 -13.91979 -13.84971 -13.76629 -13.64585 -13.47881 -13.13676 -12.92328 -12.64552 -12.41919 -12.13201 -11.56415 -11.46818 -11.36404 -11.16565 -11.00442 -10.90831 -10.89073 -10.74951 -10.29997 -10.22609 -10.06982 -9.70676 -9.35884 -8.93913 -8.81856 -8.46246 -8.10097 -7.08606 -5.84527 -3.28467 0.04753 1.06376 1.68817 2.32247 2.33322 2.83101 3.03772 3.32623 3.41648 3.42577 3.59554 4.00095 4.21322 4.37433 4.40540 4.50488 4.54834 4.62695 4.74816 4.82606 4.96483 5.04380 5.15549 5.20493 5.33989 5.37981 5.45461 5.66796 5.69127 5.72649 5.87190 5.91253 5.97182 6.02752 6.11352 6.22188 6.42097 6.44542 6.50197 6.65670 6.79809 7.20414 7.38064 7.42665 7.68498 8.03171 8.21891 9.03676 9.20546 9.69836 10.17074 11.18477 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.002300 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.803973 B =12172.907589 C =12711.305407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.095 4.095 3 C 0.269 3.731 4 N -0.575 5.575 5 C -0.272 4.272 6 H 0.073 0.927 7 C 0.008 3.992 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.291 1.291 13 C 0.218 3.782 14 C -0.002 4.002 15 C -0.060 4.060 16 O -0.201 6.201 17 C 0.187 3.813 18 C 0.043 3.957 19 C -0.109 4.109 20 C -0.053 4.053 21 C -0.125 4.125 22 C 0.511 3.489 23 O -0.507 6.507 24 O -0.354 6.354 25 C 0.037 3.963 26 C -0.059 4.059 27 C -0.090 4.090 28 N -0.442 5.442 29 H 0.190 0.810 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.255 0.745 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.216 0.784 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.146 0.854 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.135 -17.749 4.079 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.098 4.098 3 C 0.144 3.856 4 N -0.294 5.294 5 C -0.401 4.401 6 H 0.091 0.909 7 C -0.192 4.192 8 N -0.523 5.523 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.218 1.218 13 C 0.089 3.911 14 C -0.127 4.127 15 C -0.131 4.131 16 O -0.087 6.087 17 C -0.015 4.015 18 C 0.042 3.958 19 C -0.129 4.129 20 C -0.071 4.071 21 C -0.127 4.127 22 C 0.356 3.644 23 O -0.396 6.396 24 O -0.270 6.270 25 C -0.057 4.057 26 C -0.077 4.077 27 C -0.109 4.109 28 N -0.172 5.172 29 H 0.208 0.792 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.232 0.768 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.122 0.878 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.164 0.836 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.096 -18.086 3.678 22.067 hybrid contribution 0.694 1.631 0.012 1.772 sum 12.790 -16.455 3.690 21.165 Atomic orbital electron populations 1.24166 0.95305 1.07956 1.04399 1.24210 0.95226 0.93787 0.96552 1.17712 0.82805 0.94066 0.91009 1.43957 1.74235 1.07474 1.03708 1.19143 1.24979 0.84819 1.11133 0.90871 1.24928 0.96023 0.97877 1.00349 1.70155 1.19162 1.38715 1.24265 0.86315 0.79502 0.83145 0.78312 1.20311 1.21494 1.21775 1.19154 0.86941 0.94401 0.90571 1.23485 1.01265 0.90941 0.97011 1.25056 0.85154 0.96534 1.06315 1.84402 1.39647 1.27254 1.57437 1.23535 0.90064 0.90145 0.97784 1.17588 0.91869 0.89401 0.96983 1.21177 0.92557 0.98605 1.00538 1.21103 1.00476 0.91224 0.94281 1.19200 0.94581 0.94165 1.04773 1.21187 0.85660 0.82530 0.74981 1.90838 1.17350 1.78785 1.52623 1.86558 1.44191 1.30005 1.66261 1.23305 0.95313 0.85945 1.01126 1.21390 0.92103 0.97591 0.96629 1.21229 1.01515 0.91782 0.96376 1.70487 1.09310 1.17489 1.19945 0.79247 0.89285 0.93814 0.93472 0.92241 0.91067 0.76758 0.84106 0.83911 0.87823 0.91746 0.91761 0.83608 0.83199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.82 19.25 29.55 0.57 -6.25 16 2 C -0.09 -2.32 11.50 -37.12 -0.43 -2.74 16 3 C 0.27 6.44 5.41 -6.83 -0.04 6.40 16 4 N -0.58 -13.67 2.47 -177.95 -0.44 -14.11 16 5 C -0.27 -7.00 9.63 -15.06 -0.15 -7.14 16 6 H 0.07 1.81 7.92 -52.49 -0.42 1.39 16 7 C 0.01 0.22 4.82 -17.43 -0.08 0.14 16 8 N -0.88 -24.64 9.61 55.49 0.53 -24.11 16 9 Si 0.90 21.04 29.61 -169.99 -5.03 16.00 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.22 4.31 6.21 -5.19 -0.03 4.28 16 14 C 0.00 -0.03 6.68 -82.90 -0.55 -0.58 16 15 C -0.06 -0.94 12.09 29.48 0.36 -0.59 16 16 O -0.20 -3.14 10.50 4.24 0.04 -3.09 16 17 C 0.19 2.94 7.89 -13.93 -0.11 2.83 16 18 C 0.04 0.55 5.88 -104.90 -0.62 -0.07 16 19 C -0.11 -1.17 9.69 -39.26 -0.38 -1.55 16 20 C -0.05 -0.53 9.58 -39.24 -0.38 -0.90 16 21 C -0.13 -1.30 5.88 -104.92 -0.62 -1.92 16 22 C 0.51 5.53 7.89 34.55 0.27 5.80 16 23 O -0.51 -6.52 16.12 -19.25 -0.31 -6.83 16 24 O -0.35 -3.23 9.80 -40.59 -0.40 -3.63 16 25 C 0.04 0.23 10.57 101.05 1.07 1.29 16 26 C -0.06 -0.57 9.60 -39.23 -0.38 -0.95 16 27 C -0.09 -1.02 9.67 -39.25 -0.38 -1.40 16 28 N -0.44 -7.88 10.89 -7.98 -0.09 -7.97 16 29 H 0.19 3.61 7.80 -54.09 -0.42 3.19 16 30 H 0.09 2.33 6.59 -51.93 -0.34 1.99 16 31 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.06 1.16 8.07 -51.93 -0.42 0.75 16 34 H 0.07 1.31 8.04 -51.93 -0.42 0.90 16 35 H 0.22 2.73 8.06 -52.49 -0.42 2.31 16 36 H 0.14 1.33 7.89 -52.49 -0.41 0.91 16 37 H 0.14 1.27 7.64 -52.49 -0.40 0.87 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.15 1.11 7.60 -52.49 -0.40 0.71 16 42 H 0.15 1.71 7.82 -52.49 -0.41 1.30 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -32.18 380.81 -6.71 -38.88 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.89 Total: 2.45 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.87 Total: -3.34 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.01 Total: -46.18 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.66 Total: -13.55 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.18 -6.71 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491789484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.338 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds