Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30996 * 1 3 3 Si 1.86797 * 120.00140 * 2 1 4 4 H 1.48493 * 109.47267 * 269.99802 * 3 2 1 5 5 H 1.48506 * 109.46930 * 29.99552 * 3 2 1 6 6 H 1.48503 * 109.47166 * 149.99482 * 3 2 1 7 7 C 1.39637 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99572 * 193.00290 * 7 2 1 9 9 N 1.36076 * 120.00149 * 13.00658 * 7 2 1 10 10 C 1.34774 * 119.99918 * 198.30993 * 9 7 2 11 11 O 1.21686 * 120.00045 * 355.04852 * 10 9 7 12 12 C 1.47000 * 120.00041 * 175.03882 * 10 9 7 13 13 C 1.34819 * 120.00082 * 181.24810 * 12 10 9 14 14 C 1.47112 * 119.99886 * 180.02562 * 13 12 10 15 15 O 1.21650 * 119.99930 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99942 * 180.02562 * 14 13 12 17 17 C 1.39866 * 119.99861 * 185.26456 * 16 14 13 18 18 C 1.40256 * 119.22412 * 36.55456 * 17 16 14 19 19 C 1.35507 * 121.75888 * 179.71873 * 18 17 16 20 20 C 1.41210 * 119.70316 * 0.25935 * 19 18 17 21 21 N 1.32090 * 134.56377 * 180.02562 * 20 19 18 22 22 N 1.39950 * 108.97488 * 179.97438 * 21 20 19 23 23 H 0.96997 * 125.03243 * 179.97438 * 22 21 20 24 24 C 1.34098 * 109.93443 * 0.02562 * 22 21 20 25 25 C 1.38262 * 107.88820 * 359.97438 * 24 22 21 26 26 C 1.36296 * 119.22137 * 216.81806 * 17 16 14 27 27 C 1.46505 * 119.99983 * 18.31473 * 9 7 2 28 28 C 1.52993 * 117.49727 * 131.18023 * 27 9 7 29 29 C 1.52997 * 117.49816 * 62.52027 * 27 9 7 30 30 H 0.96999 * 120.00228 * 0.02562 * 1 2 3 31 31 H 1.08006 * 120.00289 * 1.24986 * 12 10 9 32 32 H 1.07997 * 119.99912 * 0.02562 * 13 12 10 33 33 H 0.97001 * 119.99958 * 5.26322 * 16 14 13 34 34 H 1.08005 * 119.12410 * 359.97438 * 18 17 16 35 35 H 1.07994 * 120.15213 * 180.23291 * 19 18 17 36 36 H 1.07996 * 126.05179 * 180.02562 * 24 22 21 37 37 H 1.08006 * 120.25820 * 359.97438 * 26 17 16 38 38 H 1.08997 * 115.54778 * 276.85256 * 27 9 7 39 39 H 1.08999 * 117.50605 * 359.97438 * 28 27 9 40 40 H 1.09004 * 117.49859 * 145.01742 * 28 27 9 41 41 H 1.09005 * 117.49590 * 214.98196 * 29 27 9 42 42 H 1.08999 * 117.50258 * 359.97229 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 2.4915 2.0463 -1.4000 5 1 1.4413 2.6527 0.7000 6 1 3.5415 1.4401 0.7002 7 6 2.0081 -1.2093 0.0005 8 1 3.0672 -1.2212 0.2110 9 7 1.3538 -2.3728 -0.2642 10 6 1.9057 -3.5511 0.0870 11 8 3.0271 -3.5814 0.5584 12 6 1.1527 -4.7999 -0.0992 13 6 1.6948 -5.9761 0.2753 14 6 0.9415 -7.2258 0.0884 15 8 -0.1707 -7.1978 -0.4036 16 7 1.4832 -8.4017 0.4633 17 6 0.8157 -9.5991 0.1861 18 6 0.1078 -9.7255 -1.0181 19 6 -0.5522 -10.8640 -1.3413 20 6 -0.5393 -11.9578 -0.4483 21 7 -1.0632 -13.1703 -0.4603 22 7 -0.7093 -13.8306 0.7219 23 1 -0.9709 -14.7353 0.9541 24 6 0.0441 -13.0269 1.4865 25 6 0.1974 -11.8262 0.8183 26 6 0.8641 -10.6137 1.0949 27 6 0.0496 -2.3444 -0.9310 28 6 -0.1526 -3.2767 -2.1270 29 6 -0.0072 -1.7690 -2.3475 30 1 -0.4850 0.8400 -0.0004 31 1 0.1653 -4.7751 -0.5361 32 1 2.6820 -6.0009 0.7125 33 1 2.3359 -8.4174 0.9254 34 1 0.0916 -8.8947 -1.7081 35 1 -1.0861 -10.9344 -2.2774 36 1 0.4585 -13.2741 2.4527 37 1 1.4124 -10.4922 2.0175 38 1 -0.8070 -2.1667 -0.2808 39 1 0.6847 -3.9109 -2.4182 40 1 -1.1425 -3.7122 -2.2640 41 1 -0.9014 -1.2130 -2.6293 42 1 0.9256 -1.4111 -2.7831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492391388.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = 71.634757 kcal Electronic energy + Delta-G solvation = -27617.201240 eV Core-core repulsion = 23565.280779 eV Total energy + Delta-G solvation = -4051.920461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.24242 -41.22669 -40.64974 -38.24102 -37.89443 -35.32165 -35.25223 -33.63662 -33.16449 -32.74174 -31.46275 -29.38672 -27.70985 -25.68252 -24.93262 -23.59827 -23.17822 -22.57936 -21.90684 -21.18528 -20.05231 -19.19960 -18.93899 -18.50559 -18.41720 -17.42938 -17.20838 -16.98689 -16.17730 -16.11206 -15.95448 -15.74417 -15.42373 -15.11565 -14.87772 -14.82848 -14.71294 -14.19943 -14.10364 -13.93307 -13.39607 -13.16847 -12.98084 -12.88894 -12.55908 -12.51258 -12.30642 -12.12991 -11.72006 -11.61293 -11.32597 -11.16203 -11.09890 -10.80324 -10.69552 -10.59040 -10.39722 -9.82562 -9.59767 -8.37995 -8.34789 -5.93113 -0.38612 -0.14978 0.76928 1.40142 1.42625 1.47824 1.53344 1.89714 1.95482 2.02431 2.26360 2.51788 2.88259 2.90693 3.04683 3.16917 3.38127 3.67046 3.76438 4.07701 4.14886 4.15615 4.22934 4.29071 4.35495 4.44284 4.51336 4.52929 4.64317 4.79338 5.01796 5.06711 5.08083 5.17998 5.24435 5.32997 5.38440 5.39375 5.46142 5.48221 5.51759 5.95216 5.98829 6.32348 6.44198 6.47576 6.60524 7.10362 7.14145 7.36980 7.97616 8.61518 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031352 B = 0.001996 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.856573 B =14024.047282 C =14601.249436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.013 3.987 3 Si 0.987 3.013 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.349 4.349 8 H 0.079 0.921 9 N -0.401 5.401 10 C 0.437 3.563 11 O -0.634 6.634 12 C -0.087 4.087 13 C -0.163 4.163 14 C 0.555 3.445 15 O -0.555 6.555 16 N -0.651 5.651 17 C 0.091 3.909 18 C -0.072 4.072 19 C -0.111 4.111 20 C 0.077 3.923 21 N -0.348 5.348 22 N -0.414 5.414 23 H 0.461 0.539 24 C 0.119 3.881 25 C -0.223 4.223 26 C -0.055 4.055 27 C 0.100 3.900 28 C -0.185 4.185 29 C -0.150 4.150 30 H 0.279 0.721 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.428 0.572 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.244 0.756 37 H 0.163 0.837 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.513 -23.697 2.524 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.193 4.193 3 Si 0.810 3.190 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.477 4.477 8 H 0.097 0.903 9 N -0.115 5.115 10 C 0.230 3.770 11 O -0.525 6.525 12 C -0.109 4.109 13 C -0.187 4.187 14 C 0.345 3.655 15 O -0.434 6.434 16 N -0.297 5.297 17 C -0.004 4.004 18 C -0.096 4.096 19 C -0.132 4.132 20 C -0.076 4.076 21 N -0.178 5.178 22 N -0.116 5.116 23 H 0.309 0.691 24 C -0.040 4.040 25 C -0.233 4.233 26 C -0.078 4.078 27 C -0.005 4.005 28 C -0.222 4.222 29 C -0.188 4.188 30 H 0.090 0.910 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.267 0.733 34 H 0.140 0.860 35 H 0.151 0.849 36 H 0.260 0.740 37 H 0.180 0.820 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.142 0.858 41 H 0.122 0.878 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.686 -24.313 1.672 24.518 hybrid contribution 1.035 1.369 0.588 1.814 sum -1.651 -22.944 2.260 23.114 Atomic orbital electron populations 1.69802 1.06913 1.29136 1.43759 1.26095 0.96270 1.02032 0.94918 0.85031 0.78161 0.76913 0.78890 1.19160 1.19500 1.19986 1.19649 0.94209 0.84402 1.49475 0.90304 1.43131 1.16716 1.05062 1.46590 1.18555 0.87973 0.84842 0.85597 1.90572 1.21557 1.87407 1.52974 1.23586 1.00212 0.91846 0.95290 1.22947 1.01426 0.90864 1.03505 1.18485 0.85204 0.84223 0.77560 1.90787 1.20361 1.87458 1.44785 1.43122 1.24703 1.03091 1.58816 1.17134 1.01058 0.87083 0.95106 1.20658 0.96099 0.96997 0.95853 1.19801 1.03163 0.90611 0.99651 1.21152 0.97121 0.93012 0.96294 1.77606 1.27922 1.07763 1.04492 1.46397 1.36447 1.15900 1.12899 0.69135 1.23480 0.93464 0.88656 0.98369 1.19678 1.09263 0.97249 0.97103 1.20177 0.99108 0.90553 0.97930 1.21332 0.86551 1.03978 0.88626 1.23628 1.03777 0.93166 1.01651 1.22838 1.02183 0.95103 0.98654 0.91047 0.83808 0.83574 0.73303 0.86031 0.84896 0.74027 0.81982 0.87455 0.89552 0.85785 0.87834 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.08 10.39 21.77 0.23 -42.85 16 2 C 0.01 0.68 5.04 85.16 0.43 1.11 16 3 Si 0.99 40.89 29.58 68.60 2.03 42.92 16 4 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.35 -19.49 9.26 84.37 0.78 -18.71 16 8 H 0.08 4.72 7.30 -2.91 -0.02 4.70 16 9 N -0.40 -20.86 2.91 -617.41 -1.80 -22.66 16 10 C 0.44 22.17 7.40 86.54 0.64 22.81 16 11 O -0.63 -35.98 15.88 -4.30 -0.07 -36.05 16 12 C -0.09 -3.51 7.81 23.78 0.19 -3.32 16 13 C -0.16 -5.53 9.59 23.82 0.23 -5.30 16 14 C 0.55 16.95 7.45 86.57 0.65 17.59 16 15 O -0.55 -20.27 14.08 -4.19 -0.06 -20.33 16 16 N -0.65 -14.66 5.29 -307.55 -1.63 -16.29 16 17 C 0.09 2.10 6.15 37.90 0.23 2.33 16 18 C -0.07 -1.93 8.48 22.13 0.19 -1.74 16 19 C -0.11 -2.80 10.07 22.37 0.23 -2.58 16 20 C 0.08 1.85 7.49 42.17 0.32 2.16 16 21 N -0.35 -7.68 12.70 -48.66 -0.62 -8.30 16 22 N -0.41 -4.56 7.19 -56.27 -0.40 -4.96 16 23 H 0.46 1.21 8.96 -213.42 -1.91 -0.70 16 24 C 0.12 1.02 12.08 84.35 1.02 2.04 16 25 C -0.22 -3.94 6.33 -20.24 -0.13 -4.07 16 26 C -0.05 -0.95 9.96 22.52 0.22 -0.72 16 27 C 0.10 4.45 3.48 44.99 0.16 4.60 16 28 C -0.18 -6.64 7.87 30.62 0.24 -6.40 16 29 C -0.15 -5.96 9.39 30.62 0.29 -5.67 16 30 H 0.28 12.98 8.30 -92.71 -0.77 12.21 16 31 H 0.14 5.60 5.00 -2.91 -0.01 5.58 16 32 H 0.15 4.68 7.53 -2.91 -0.02 4.65 16 33 H 0.43 6.60 8.80 -92.71 -0.82 5.79 16 34 H 0.12 3.57 6.54 -2.91 -0.02 3.55 16 35 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.24 -0.74 8.06 -2.91 -0.02 -0.77 16 37 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.11 5.06 7.50 -2.39 -0.02 5.04 16 39 H 0.09 3.16 7.26 -2.39 -0.02 3.15 16 40 H 0.12 3.75 8.14 -2.38 -0.02 3.73 16 41 H 0.10 3.74 8.14 -2.38 -0.02 3.72 16 42 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -78.56 362.98 1.73 -76.82 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -1.62 Total: 27.56 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.67 Total: 4.14 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -4.22 Total: -95.06 kcal Atomic # 8 Polarization: -56.25 SS G_CDS: -0.13 Total: -56.38 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -78.56 1.73 -76.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492391388.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.459 kcal (2) G-P(sol) polarization free energy of solvation -78.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds