Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31000 * 1 3 3 Si 1.86798 * 119.99654 * 2 1 4 4 H 1.48505 * 109.47118 * 275.01672 * 3 2 1 5 5 H 1.48496 * 109.47246 * 35.01665 * 3 2 1 6 6 H 1.48501 * 109.47045 * 155.02184 * 3 2 1 7 7 C 1.39631 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00161 * 226.12935 * 7 2 1 9 9 N 1.36079 * 120.00150 * 46.12293 * 7 2 1 10 10 C 1.34773 * 120.00585 * 238.83149 * 9 7 2 11 11 O 1.21691 * 119.99357 * 0.21371 * 10 9 7 12 12 C 1.46997 * 120.00110 * 180.21854 * 10 9 7 13 13 C 1.34819 * 120.00051 * 199.07422 * 12 10 9 14 14 C 1.47115 * 119.99788 * 347.22442 * 13 12 10 15 15 O 1.21648 * 119.99751 * 48.68670 * 14 13 12 16 16 N 1.34772 * 120.00215 * 228.68323 * 14 13 12 17 17 C 1.39879 * 120.00000 * 187.72926 * 16 14 13 18 18 C 1.40254 * 119.22154 * 39.58881 * 17 16 14 19 19 C 1.35503 * 121.75516 * 180.02562 * 18 17 16 20 20 C 1.41207 * 119.70625 * 359.94087 * 19 18 17 21 21 N 1.32091 * 134.56510 * 180.02562 * 20 19 18 22 22 N 1.39946 * 108.97235 * 179.97438 * 21 20 19 23 23 H 0.97004 * 125.02835 * 179.97438 * 22 21 20 24 24 C 1.34090 * 109.93673 * 0.02562 * 22 21 20 25 25 C 1.38256 * 107.89137 * 0.02562 * 24 22 21 26 26 C 1.36289 * 119.21895 * 219.54886 * 17 16 14 27 27 C 1.46503 * 119.99428 * 58.82813 * 9 7 2 28 28 C 1.53002 * 117.50140 * 67.43701 * 27 9 7 29 29 C 1.52997 * 117.50327 * 358.81350 * 27 9 7 30 30 H 0.96995 * 120.00636 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00470 * 19.06914 * 12 10 9 32 32 H 1.08001 * 120.00724 * 167.22900 * 13 12 10 33 33 H 0.97000 * 120.00250 * 7.72531 * 16 14 13 34 34 H 1.08003 * 119.12338 * 0.02562 * 18 17 16 35 35 H 1.08005 * 120.14854 * 180.21030 * 19 18 17 36 36 H 1.08004 * 126.05124 * 180.02562 * 24 22 21 37 37 H 1.07997 * 120.26051 * 0.02562 * 26 17 16 38 38 H 1.08999 * 115.54883 * 213.13926 * 27 9 7 39 39 H 1.09001 * 117.49705 * 359.97438 * 28 27 9 40 40 H 1.08996 * 117.50258 * 145.01256 * 28 27 9 41 41 H 1.09001 * 117.49834 * 214.98045 * 29 27 9 42 42 H 1.08998 * 117.49580 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 2.3853 2.1077 -1.3948 5 1 1.4984 2.6197 0.8034 6 1 3.5905 1.4120 0.5912 7 6 2.0082 -1.2092 0.0005 8 1 2.8395 -1.3525 0.6749 9 7 1.6411 -2.2073 -0.8485 10 6 1.2787 -3.4095 -0.3588 11 8 1.2761 -3.6012 0.8429 12 6 0.8867 -4.4890 -1.2763 13 6 0.1714 -5.5362 -0.8186 14 6 0.0219 -5.7481 0.6295 15 8 -0.3085 -4.8242 1.3485 16 7 0.2509 -6.9659 1.1595 17 6 -0.0455 -7.2103 2.5045 18 6 -1.2118 -6.6631 3.0590 19 6 -1.5484 -6.8665 4.3556 20 6 -0.7120 -7.6494 5.1812 21 7 -0.7504 -8.0286 6.4459 22 7 0.3742 -8.8153 6.7193 23 1 0.5780 -9.2157 7.5791 24 6 1.1289 -8.9328 5.6172 25 6 0.5122 -8.2246 4.6026 26 6 0.8054 -7.9752 3.2450 27 6 1.6396 -1.9749 -2.2950 28 6 2.9920 -1.7587 -2.9771 29 6 2.0342 -0.5809 -2.7870 30 1 -0.4851 0.8399 -0.0004 31 1 1.1717 -4.4434 -2.3170 32 1 -0.2918 -6.2195 -1.5150 33 1 0.6213 -7.6730 0.6083 34 1 -1.8589 -6.0636 2.4358 35 1 -2.4547 -6.4355 4.7549 36 1 2.0547 -9.4833 5.5365 37 1 1.6977 -8.3864 2.7965 38 1 0.8722 -2.5080 -2.8560 39 1 3.8828 -1.7890 -2.3496 40 1 3.1146 -2.1498 -3.9871 41 1 1.5265 -0.1971 -3.6719 42 1 2.2944 0.1634 -2.0344 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492391389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = 117.194164 kcal Electronic energy + Delta-G solvation = -28435.455100 eV Core-core repulsion = 24385.510243 eV Total energy + Delta-G solvation = -4049.944857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.23160 -39.72380 -38.52673 -36.98512 -35.94920 -33.88756 -33.04252 -32.21010 -31.63445 -31.23755 -30.41216 -28.17697 -25.85152 -24.23919 -23.44313 -21.82138 -21.62658 -21.16501 -20.80447 -20.09494 -18.62980 -17.97528 -17.32350 -17.17095 -16.85175 -16.27737 -15.32946 -15.12952 -14.90331 -14.57201 -14.24767 -14.15783 -13.88564 -13.65224 -13.51180 -13.20061 -13.02550 -12.81646 -12.56838 -12.47315 -11.96047 -11.93380 -11.52075 -11.48367 -11.29841 -10.84284 -10.48054 -10.36147 -10.32745 -10.28090 -9.79244 -9.65679 -9.46974 -9.33864 -8.87754 -8.61701 -8.48371 -7.91215 -7.26079 -7.16487 -6.35433 -3.94702 0.64576 1.56571 1.93719 2.45639 2.66080 3.13738 3.28268 3.31920 3.38322 3.60514 4.05150 4.14926 4.35201 4.38510 4.53623 4.61237 4.86089 5.03565 5.06351 5.17462 5.25832 5.43626 5.48934 5.60136 5.65339 5.68464 5.80260 5.84781 5.98303 6.13653 6.26743 6.32291 6.40291 6.47532 6.50627 6.55953 6.66834 6.70840 6.83316 7.01785 7.01950 7.19660 7.56850 7.58362 7.84093 8.51210 8.66107 8.82824 9.31043 9.44433 10.22783 10.55460 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017025 B = 0.002694 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.227956 B =10391.226436 C =11220.202669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.090 3.910 3 Si 0.864 3.136 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.366 4.366 8 H 0.082 0.918 9 N -0.405 5.405 10 C 0.477 3.523 11 O -0.519 6.519 12 C -0.104 4.104 13 C -0.178 4.178 14 C 0.531 3.469 15 O -0.446 6.446 16 N -0.685 5.685 17 C 0.148 3.852 18 C -0.060 4.060 19 C -0.094 4.094 20 C 0.099 3.901 21 N -0.308 5.308 22 N -0.432 5.432 23 H 0.441 0.559 24 C 0.067 3.933 25 C -0.181 4.181 26 C -0.096 4.096 27 C 0.077 3.923 28 C -0.202 4.202 29 C -0.178 4.178 30 H 0.268 0.732 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.403 0.597 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.185 0.815 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 -17.911 -0.316 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.126 4.126 3 Si 0.688 3.312 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.099 0.901 9 N -0.125 5.125 10 C 0.266 3.734 11 O -0.398 6.398 12 C -0.127 4.127 13 C -0.201 4.201 14 C 0.318 3.682 15 O -0.314 6.314 16 N -0.333 5.333 17 C 0.053 3.947 18 C -0.084 4.084 19 C -0.115 4.115 20 C -0.055 4.055 21 N -0.136 5.136 22 N -0.133 5.133 23 H 0.285 0.715 24 C -0.089 4.089 25 C -0.192 4.192 26 C -0.120 4.120 27 C -0.028 4.028 28 C -0.241 4.241 29 C -0.216 4.216 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.238 0.762 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.202 0.798 37 H 0.143 0.857 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.273 -17.068 1.932 17.179 hybrid contribution 1.191 0.412 -0.917 1.559 sum 1.464 -16.656 1.014 16.751 Atomic orbital electron populations 1.70306 1.07723 1.28316 1.35141 1.25524 0.93657 1.00263 0.93175 0.87059 0.82178 0.83527 0.78430 1.19563 1.21127 1.18645 1.18614 1.15627 0.92096 1.22830 0.90092 1.42466 1.57853 1.10259 1.01962 1.18844 0.81635 0.84481 0.88460 1.90840 1.52434 1.81579 1.14961 1.23919 0.95249 0.92862 1.00629 1.22877 1.03020 1.00130 0.94094 1.18604 0.79038 0.81558 0.89016 1.91006 1.40447 1.38792 1.61180 1.43472 1.66898 1.13846 1.09072 1.17009 0.94003 0.98944 0.84753 1.20677 0.95235 0.97152 0.95293 1.19734 0.99741 1.00001 0.92069 1.20968 0.95600 0.97838 0.91132 1.77621 1.05046 1.15570 1.15403 1.46229 1.17240 1.38339 1.11538 0.71549 1.22550 0.98022 1.01334 0.86963 1.19308 0.98226 1.06421 0.95207 1.19823 0.98148 1.03173 0.90862 1.21805 0.95960 0.99860 0.85219 1.23309 0.95910 1.04286 1.00546 1.23251 1.03215 0.92817 1.02282 0.92128 0.85277 0.84628 0.76186 0.84747 0.85071 0.79773 0.85675 0.87966 0.88833 0.89849 0.90007 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -22.44 13.90 55.53 0.77 -21.67 16 2 C 0.09 2.44 3.90 -17.39 -0.07 2.37 16 3 Si 0.86 19.92 27.39 -169.99 -4.66 15.26 16 4 H -0.27 -5.86 6.81 56.52 0.38 -5.47 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.37 -10.35 7.67 -15.15 -0.12 -10.47 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 9 N -0.41 -10.33 2.82 -109.13 -0.31 -10.64 16 10 C 0.48 12.10 7.34 -12.71 -0.09 12.01 16 11 O -0.52 -15.46 12.34 -20.23 -0.25 -15.71 16 12 C -0.10 -1.93 9.09 -37.25 -0.34 -2.26 16 13 C -0.18 -2.86 10.04 -37.19 -0.37 -3.23 16 14 C 0.53 10.09 6.29 -12.66 -0.08 10.01 16 15 O -0.45 -11.15 11.63 -20.19 -0.23 -11.38 16 16 N -0.68 -10.01 5.27 -11.19 -0.06 -10.07 16 17 C 0.15 2.30 6.07 -84.13 -0.51 1.79 16 18 C -0.06 -0.98 8.49 -39.80 -0.34 -1.32 16 19 C -0.09 -1.46 10.07 -39.43 -0.40 -1.86 16 20 C 0.10 1.52 7.49 -83.03 -0.62 0.90 16 21 N -0.31 -4.42 12.70 33.27 0.42 -4.00 16 22 N -0.43 -4.23 7.19 30.86 0.22 -4.00 16 23 H 0.44 2.43 8.96 -182.71 -1.64 0.80 16 24 C 0.07 0.64 12.08 -16.56 -0.20 0.44 16 25 C -0.18 -2.43 6.33 -105.20 -0.67 -3.10 16 26 C -0.10 -1.29 9.97 -39.19 -0.39 -1.68 16 27 C 0.08 1.59 5.49 -67.93 -0.37 1.22 16 28 C -0.20 -3.52 10.38 -26.73 -0.28 -3.79 16 29 C -0.18 -3.53 9.37 -26.73 -0.25 -3.78 16 30 H 0.27 7.05 8.30 -40.82 -0.34 6.71 16 31 H 0.13 1.88 6.84 -52.49 -0.36 1.52 16 32 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.40 4.18 8.81 -40.82 -0.36 3.82 16 34 H 0.13 2.32 6.85 -52.48 -0.36 1.96 16 35 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.19 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.10 1.85 7.00 -51.93 -0.36 1.49 16 39 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.11 2.42 3.12 -51.93 -0.16 2.26 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -39.92 358.94 -9.55 -49.47 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.78 Total: 10.11 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -5.09 Total: -2.77 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 1.05 Total: -50.38 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.48 Total: -27.09 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.66 Total: 15.26 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -39.92 -9.55 -49.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492391389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.661 kcal (2) G-P(sol) polarization free energy of solvation -39.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds