Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31501 * 1 3 3 Si 1.86802 * 119.99737 * 2 1 4 4 H 1.48504 * 109.47393 * 240.00137 * 3 2 1 5 5 H 1.48498 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47052 * 120.00413 * 3 2 1 7 7 C 1.38715 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00129 * 179.97438 * 7 2 1 9 9 O 1.34783 * 120.00366 * 359.97438 * 7 2 1 10 10 C 1.35564 * 117.00526 * 185.06351 * 9 7 2 11 11 C 1.39187 * 119.89736 * 354.35232 * 10 9 7 12 12 C 1.37596 * 120.10293 * 180.02562 * 11 10 9 13 13 C 1.40021 * 119.89607 * 359.97438 * 12 11 10 14 14 C 1.46958 * 120.10391 * 180.02562 * 13 12 11 15 15 C 1.35018 * 120.00880 * 136.65282 * 14 13 12 16 16 C 1.46260 * 119.99404 * 348.69914 * 15 14 13 17 17 O 1.21721 * 120.00199 * 353.14147 * 16 15 14 18 18 N 1.34778 * 119.99541 * 173.14439 * 16 15 14 19 19 C 1.47088 * 121.03364 * 179.97438 * 18 16 15 20 20 C 1.53249 * 109.33327 * 116.45468 * 19 18 16 21 21 N 1.46620 * 109.25059 * 46.20859 * 20 19 18 22 22 N 1.28407 * 127.59372 * 161.38154 * 21 20 19 23 23 N 1.28852 * 110.18620 * 179.55453 * 22 21 20 24 24 C 1.34071 * 108.94798 * 0.02562 * 23 22 21 25 25 C 1.34369 * 106.16850 * 0.17237 * 24 23 22 26 26 C 1.47564 * 121.04108 * 0.02562 * 18 16 15 27 27 C 1.40032 * 119.80217 * 0.27424 * 13 12 11 28 28 C 1.37597 * 119.88977 * 359.42779 * 27 13 12 29 29 H 0.96995 * 120.00421 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.94774 * 359.97438 * 11 10 9 31 31 H 1.07993 * 120.05245 * 180.02562 * 12 11 10 32 32 H 1.08008 * 119.99431 * 316.65716 * 14 13 12 33 33 H 1.07998 * 120.00623 * 168.69142 * 15 14 13 34 34 H 1.09002 * 109.49419 * 356.50123 * 19 18 16 35 35 H 1.09000 * 109.49573 * 236.41504 * 19 18 16 36 36 H 1.08998 * 109.50386 * 286.27954 * 20 19 18 37 37 H 1.08993 * 109.50612 * 166.14051 * 20 19 18 38 38 H 1.07998 * 126.91400 * 180.14726 * 24 23 22 39 39 H 1.08993 * 109.95880 * 342.03753 * 26 18 16 40 40 H 1.08997 * 109.95998 * 103.24141 * 26 18 16 41 41 H 1.07997 * 120.05552 * 179.72367 * 27 13 12 42 42 H 1.08010 * 119.94832 * 180.27443 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0086 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0010 9 8 1.3348 -2.3686 -0.0005 10 6 2.0691 -3.5032 0.1055 11 6 3.4592 -3.4340 0.0894 12 6 4.2086 -4.5830 0.1962 13 6 3.5708 -5.8231 0.3219 14 6 4.3668 -7.0531 0.4368 15 6 4.0232 -7.9980 1.3380 16 6 3.0220 -7.7019 2.3623 17 8 2.5903 -6.5701 2.4822 18 7 2.5776 -8.6822 3.1735 19 6 1.5718 -8.4098 4.2115 20 6 0.2980 -9.2047 3.9048 21 7 0.6594 -10.5839 3.5629 22 7 -0.1026 -11.6174 3.5673 23 7 0.5601 -12.6600 3.2007 24 6 1.8256 -12.3020 2.9402 25 6 1.8962 -10.9806 3.1732 26 6 3.0857 -10.0620 3.0487 27 6 2.1720 -5.8884 0.3324 28 6 1.4309 -4.7336 0.2312 29 1 -0.4850 0.8400 0.0004 30 1 3.9503 -2.4771 -0.0080 31 1 5.2871 -4.5283 0.1840 32 1 5.2268 -7.2012 -0.1996 33 1 4.4874 -8.9725 1.3025 34 1 1.3415 -7.3445 4.2242 35 1 1.9623 -8.7096 5.1840 36 1 -0.2236 -8.7462 3.0647 37 1 -0.3507 -9.2049 4.7806 38 1 2.6270 -12.9462 2.6099 39 1 3.5606 -10.1971 2.0770 40 1 3.8015 -10.2683 3.8443 41 1 1.6758 -6.8432 0.4246 42 1 0.3520 -4.7824 0.2436 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493613499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = 114.987721 kcal Electronic energy + Delta-G solvation = -28366.845148 eV Core-core repulsion = 24316.804613 eV Total energy + Delta-G solvation = -4050.040535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.69043 -40.20984 -38.92206 -37.29379 -36.23546 -34.51575 -33.22870 -32.23102 -31.94921 -30.58453 -30.21952 -28.16690 -26.59139 -25.63821 -24.96833 -23.13106 -22.73160 -21.88513 -21.31573 -20.23249 -18.47884 -18.03333 -17.92737 -17.40254 -17.12792 -16.82323 -15.94927 -15.67944 -14.91829 -14.72570 -14.64790 -14.43749 -14.29834 -14.05853 -13.63660 -13.55401 -13.33591 -13.24789 -13.06724 -12.84756 -12.60475 -12.26849 -12.14616 -11.92803 -11.76400 -11.45332 -11.26670 -11.05832 -10.77166 -10.72988 -10.48528 -10.34137 -9.75680 -9.55873 -9.52572 -9.27049 -9.09555 -8.78119 -8.04076 -6.97636 -6.52881 -4.08691 1.05377 1.25545 1.88826 2.26005 2.31300 2.56939 2.64970 3.09037 3.11044 3.13151 3.33273 3.80310 3.91152 3.97858 4.27148 4.41887 4.57581 4.60680 4.66568 4.74551 4.89770 4.98054 5.03530 5.13749 5.17123 5.25435 5.26442 5.43430 5.46335 5.63326 5.73488 5.81960 5.91064 6.13637 6.17379 6.24881 6.33197 6.47485 6.68061 6.92808 7.03450 7.10530 7.27236 7.35431 7.41589 7.82064 7.93257 8.17039 8.20821 8.92402 9.62967 10.64582 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021597 B = 0.002351 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.140678 B =11906.275473 C =12640.388817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.391 4.391 8 H 0.094 0.906 9 O -0.170 6.170 10 C 0.172 3.828 11 C -0.250 4.250 12 C -0.038 4.038 13 C -0.197 4.197 14 C 0.041 3.959 15 C -0.278 4.278 16 C 0.551 3.449 17 O -0.500 6.500 18 N -0.630 5.630 19 C 0.100 3.900 20 C 0.098 3.902 21 N -0.279 5.279 22 N -0.081 5.081 23 N -0.273 5.273 24 C -0.039 4.039 25 C -0.036 4.036 26 C 0.187 3.813 27 C 0.011 3.989 28 C -0.202 4.202 29 H 0.272 0.728 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.193 0.807 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.902 -18.995 6.280 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.111 0.889 9 O -0.072 6.072 10 C 0.117 3.883 11 C -0.270 4.270 12 C -0.056 4.056 13 C -0.197 4.197 14 C 0.021 3.979 15 C -0.299 4.299 16 C 0.344 3.656 17 O -0.374 6.374 18 N -0.367 5.367 19 C -0.025 4.025 20 C -0.024 4.024 21 N -0.075 5.075 22 N -0.060 5.060 23 N -0.139 5.139 24 C -0.197 4.197 25 C -0.169 4.169 26 C 0.062 3.938 27 C -0.008 4.008 28 C -0.222 4.222 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.210 0.790 39 H 0.134 0.866 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.741 -18.602 6.595 20.856 hybrid contribution 1.499 1.065 -0.044 1.839 sum 8.240 -17.537 6.551 20.454 Atomic orbital electron populations 1.70003 1.06069 1.28032 1.45085 1.25340 0.95854 0.98975 0.96342 0.85758 0.78736 0.79548 0.79285 1.19383 1.20200 1.19396 1.21363 0.91927 0.80729 1.52699 0.88856 1.83902 1.34830 1.11697 1.76750 1.19530 0.90275 0.87729 0.90788 1.20965 0.93641 0.98852 1.13503 1.20746 0.97945 0.91504 0.95446 1.18289 0.92987 0.92277 1.16195 1.22404 0.93444 0.91018 0.91027 1.22559 1.05682 1.01317 1.00375 1.18548 0.81640 0.84061 0.81362 1.91020 1.57091 1.19933 1.69404 1.48279 1.43294 1.08961 1.36160 1.21854 0.86404 1.02863 0.91346 1.22737 0.99910 0.75125 1.04612 1.47399 1.07169 1.09856 1.43061 1.78260 1.19491 0.89009 1.19253 1.75304 1.04118 1.19483 1.14967 1.23085 0.96691 0.92803 1.07083 1.22284 0.89785 0.96565 1.08257 1.20409 0.90791 0.77971 1.04674 1.20411 0.92086 0.96084 0.92193 1.19999 0.99307 0.90232 1.12648 0.91787 0.85575 0.87500 0.85788 0.85711 0.85441 0.89990 0.87581 0.86469 0.79005 0.86640 0.88780 0.88306 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.91 13.67 55.48 0.76 -24.15 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.39 -10.84 9.48 30.91 0.29 -10.55 16 8 H 0.09 2.38 5.18 -52.48 -0.27 2.11 16 9 O -0.17 -4.85 9.74 0.75 0.01 -4.84 16 10 C 0.17 4.20 6.66 -38.88 -0.26 3.94 16 11 C -0.25 -5.44 9.14 -39.46 -0.36 -5.80 16 12 C -0.04 -0.69 9.78 -39.15 -0.38 -1.07 16 13 C -0.20 -3.35 4.54 -105.03 -0.48 -3.83 16 14 C 0.04 0.50 9.80 -37.20 -0.36 0.14 16 15 C -0.28 -2.97 9.13 -37.50 -0.34 -3.32 16 16 C 0.55 6.95 6.68 -13.04 -0.09 6.86 16 17 O -0.50 -8.51 11.62 5.17 0.06 -8.45 16 18 N -0.63 -5.88 2.98 -175.20 -0.52 -6.40 16 19 C 0.10 0.81 6.41 -3.59 -0.02 0.78 16 20 C 0.10 0.78 7.39 -3.85 -0.03 0.75 16 21 N -0.28 -2.87 3.76 -56.97 -0.21 -3.09 16 22 N -0.08 -1.03 13.22 60.35 0.80 -0.24 16 23 N -0.27 -3.45 12.42 30.10 0.37 -3.08 16 24 C -0.04 -0.36 12.03 -17.94 -0.22 -0.57 16 25 C -0.04 -0.31 6.74 -82.24 -0.55 -0.87 16 26 C 0.19 1.20 6.58 -4.56 -0.03 1.17 16 27 C 0.01 0.20 6.60 -39.14 -0.26 -0.06 16 28 C -0.20 -4.42 9.97 -39.47 -0.39 -4.81 16 29 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.13 2.72 5.62 -52.49 -0.29 2.43 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.13 0.85 6.16 -52.49 -0.32 0.53 16 34 H 0.13 1.21 7.02 -51.93 -0.36 0.84 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.55 5.77 -51.93 -0.30 0.25 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 1.68 7.02 -52.49 -0.37 1.31 16 42 H 0.11 2.43 8.06 -52.48 -0.42 2.00 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -35.61 354.59 -6.44 -42.05 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.44 Total: 3.92 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -3.58 Total: -16.24 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 1.19 Total: -36.95 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.07 Total: -13.29 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.61 -6.44 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493613499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.038 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds