Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31501 * 1 3 3 Si 1.86802 * 119.99737 * 2 1 4 4 H 1.48504 * 109.47393 * 240.00137 * 3 2 1 5 5 H 1.48498 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47052 * 120.00413 * 3 2 1 7 7 C 1.38715 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00129 * 179.97438 * 7 2 1 9 9 O 1.34783 * 120.00366 * 359.97438 * 7 2 1 10 10 C 1.35564 * 117.00526 * 185.06351 * 9 7 2 11 11 C 1.39187 * 119.89736 * 354.35232 * 10 9 7 12 12 C 1.37596 * 120.10293 * 180.02562 * 11 10 9 13 13 C 1.40021 * 119.89607 * 359.97438 * 12 11 10 14 14 C 1.46958 * 120.10391 * 180.02562 * 13 12 11 15 15 C 1.35018 * 120.00880 * 136.65282 * 14 13 12 16 16 C 1.46260 * 119.99404 * 348.69914 * 15 14 13 17 17 O 1.21721 * 120.00199 * 353.14147 * 16 15 14 18 18 N 1.34778 * 119.99541 * 173.14439 * 16 15 14 19 19 C 1.47088 * 121.03364 * 179.97438 * 18 16 15 20 20 C 1.53249 * 109.33327 * 116.45468 * 19 18 16 21 21 N 1.46620 * 109.25059 * 46.20859 * 20 19 18 22 22 N 1.28407 * 127.59372 * 161.38154 * 21 20 19 23 23 N 1.28852 * 110.18620 * 179.55453 * 22 21 20 24 24 C 1.34071 * 108.94798 * 0.02562 * 23 22 21 25 25 C 1.34369 * 106.16850 * 0.17237 * 24 23 22 26 26 C 1.47564 * 121.04108 * 0.02562 * 18 16 15 27 27 C 1.40032 * 119.80217 * 0.27424 * 13 12 11 28 28 C 1.37597 * 119.88977 * 359.42779 * 27 13 12 29 29 H 0.96995 * 120.00421 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.94774 * 359.97438 * 11 10 9 31 31 H 1.07993 * 120.05245 * 180.02562 * 12 11 10 32 32 H 1.08008 * 119.99431 * 316.65716 * 14 13 12 33 33 H 1.07998 * 120.00623 * 168.69142 * 15 14 13 34 34 H 1.09002 * 109.49419 * 356.50123 * 19 18 16 35 35 H 1.09000 * 109.49573 * 236.41504 * 19 18 16 36 36 H 1.08998 * 109.50386 * 286.27954 * 20 19 18 37 37 H 1.08993 * 109.50612 * 166.14051 * 20 19 18 38 38 H 1.07998 * 126.91400 * 180.14726 * 24 23 22 39 39 H 1.08993 * 109.95880 * 342.03753 * 26 18 16 40 40 H 1.08997 * 109.95998 * 103.24141 * 26 18 16 41 41 H 1.07997 * 120.05552 * 179.72367 * 27 13 12 42 42 H 1.08010 * 119.94832 * 180.27443 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0086 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0010 9 8 1.3348 -2.3686 -0.0005 10 6 2.0691 -3.5032 0.1055 11 6 3.4592 -3.4340 0.0894 12 6 4.2086 -4.5830 0.1962 13 6 3.5708 -5.8231 0.3219 14 6 4.3668 -7.0531 0.4368 15 6 4.0232 -7.9980 1.3380 16 6 3.0220 -7.7019 2.3623 17 8 2.5903 -6.5701 2.4822 18 7 2.5776 -8.6822 3.1735 19 6 1.5718 -8.4098 4.2115 20 6 0.2980 -9.2047 3.9048 21 7 0.6594 -10.5839 3.5629 22 7 -0.1026 -11.6174 3.5673 23 7 0.5601 -12.6600 3.2007 24 6 1.8256 -12.3020 2.9402 25 6 1.8962 -10.9806 3.1732 26 6 3.0857 -10.0620 3.0487 27 6 2.1720 -5.8884 0.3324 28 6 1.4309 -4.7336 0.2312 29 1 -0.4850 0.8400 0.0004 30 1 3.9503 -2.4771 -0.0080 31 1 5.2871 -4.5283 0.1840 32 1 5.2268 -7.2012 -0.1996 33 1 4.4874 -8.9725 1.3025 34 1 1.3415 -7.3445 4.2242 35 1 1.9623 -8.7096 5.1840 36 1 -0.2236 -8.7462 3.0647 37 1 -0.3507 -9.2049 4.7806 38 1 2.6270 -12.9462 2.6099 39 1 3.5606 -10.1971 2.0770 40 1 3.8015 -10.2683 3.8443 41 1 1.6758 -6.8432 0.4246 42 1 0.3520 -4.7824 0.2436 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493613499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = 89.534047 kcal Electronic energy + Delta-G solvation = -28367.948903 eV Core-core repulsion = 24316.804613 eV Total energy + Delta-G solvation = -4051.144289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.43591 -41.27272 -40.52129 -38.53754 -37.50561 -35.28351 -34.61905 -33.92991 -32.70747 -31.82830 -31.39512 -29.55240 -27.50224 -27.25265 -25.92568 -24.11052 -23.69864 -23.41637 -22.48940 -21.23476 -19.92599 -19.33840 -18.75027 -18.71216 -18.13121 -17.87904 -16.86390 -16.56168 -16.36812 -16.23234 -15.83672 -15.57804 -15.35951 -15.28721 -15.03362 -14.70131 -14.50036 -14.36070 -14.01281 -13.93164 -13.82007 -13.57014 -13.49004 -13.03683 -12.84291 -12.69283 -12.59676 -12.37745 -12.20883 -12.12642 -12.02376 -11.24485 -11.10467 -10.97894 -10.73819 -10.40729 -10.29285 -9.88900 -9.57288 -8.57014 -8.48878 -6.16225 -0.04217 0.53329 0.70634 1.10184 1.20278 1.33524 1.46431 1.50496 1.53799 1.91087 2.16770 2.36973 2.86674 3.15925 3.20632 3.33793 3.51600 3.56791 3.75524 3.89584 3.97750 4.08267 4.12937 4.14743 4.20364 4.38352 4.45883 4.47570 4.53999 4.61853 4.66604 4.76433 4.79018 5.04384 5.08663 5.15580 5.22412 5.27037 5.27415 5.42757 5.54210 5.67237 5.72608 5.81976 6.01877 6.23862 6.30390 6.95062 7.22010 7.44064 7.77109 8.73997 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021597 B = 0.002351 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.140678 B =11906.275473 C =12640.388817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.021 2.979 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.231 6.231 10 C 0.127 3.873 11 C -0.259 4.259 12 C -0.045 4.045 13 C -0.163 4.163 14 C 0.014 3.986 15 C -0.239 4.239 16 C 0.539 3.461 17 O -0.555 6.555 18 N -0.625 5.625 19 C 0.101 3.899 20 C 0.098 3.902 21 N -0.283 5.283 22 N -0.122 5.122 23 N -0.309 5.309 24 C -0.038 4.038 25 C -0.033 4.033 26 C 0.186 3.814 27 C 0.014 3.986 28 C -0.221 4.221 29 H 0.273 0.727 30 H 0.120 0.880 31 H 0.150 0.850 32 H 0.172 0.828 33 H 0.182 0.818 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.230 0.770 39 H 0.145 0.855 40 H 0.129 0.871 41 H 0.117 0.883 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.624 -22.558 6.775 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.121 0.879 9 O -0.137 6.137 10 C 0.076 3.924 11 C -0.278 4.278 12 C -0.063 4.063 13 C -0.163 4.163 14 C -0.005 4.005 15 C -0.259 4.259 16 C 0.332 3.668 17 O -0.434 6.434 18 N -0.359 5.359 19 C -0.023 4.023 20 C -0.023 4.023 21 N -0.079 5.079 22 N -0.100 5.100 23 N -0.173 5.173 24 C -0.195 4.195 25 C -0.166 4.166 26 C 0.063 3.937 27 C -0.005 4.005 28 C -0.240 4.240 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.168 0.832 32 H 0.190 0.810 33 H 0.199 0.801 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.153 0.847 38 H 0.247 0.753 39 H 0.162 0.838 40 H 0.147 0.853 41 H 0.134 0.866 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.485 -22.285 7.110 26.059 hybrid contribution 0.202 1.522 -0.030 1.535 sum 11.688 -20.763 7.080 24.856 Atomic orbital electron populations 1.70162 1.08172 1.28966 1.48623 1.26664 0.96864 1.02886 0.95731 0.84627 0.77395 0.74008 0.80041 1.17833 1.19598 1.18179 1.21845 0.92616 0.81357 1.53271 0.87926 1.83873 1.36345 1.12776 1.80751 1.20026 0.91768 0.87518 0.93073 1.21110 0.92751 1.00247 1.13698 1.21197 0.99901 0.90536 0.94643 1.18894 0.92682 0.94344 1.10406 1.22646 0.95027 0.88879 0.93933 1.23112 1.02614 1.02610 0.97522 1.19110 0.81855 0.83817 0.81982 1.91033 1.59118 1.22427 1.70829 1.48310 1.42615 1.09811 1.35155 1.21885 0.86387 1.01830 0.92192 1.22794 1.00186 0.74322 1.04986 1.47589 1.07757 1.09858 1.42703 1.78236 1.20616 0.89798 1.21373 1.75256 1.05998 1.20092 1.15987 1.23761 0.96251 0.93479 1.06048 1.22764 0.89767 0.96983 1.07088 1.20870 0.90082 0.75144 1.07615 1.20624 0.93212 0.95354 0.91266 1.20169 0.99166 0.91012 1.13697 0.91773 0.86273 0.83244 0.81031 0.80107 0.87295 0.87593 0.88769 0.84714 0.75324 0.83793 0.85312 0.86557 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.71 13.67 21.62 0.30 -57.42 16 2 C -0.02 -1.39 5.49 84.86 0.47 -0.92 16 3 Si 1.02 43.31 29.55 68.60 2.03 45.33 16 4 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.42 -24.77 9.48 67.93 0.64 -24.12 16 8 H 0.10 5.59 5.18 -2.91 -0.02 5.57 16 9 O -0.23 -14.48 9.74 -20.22 -0.20 -14.67 16 10 C 0.13 6.67 6.66 22.72 0.15 6.82 16 11 C -0.26 -11.61 9.14 22.35 0.20 -11.40 16 12 C -0.04 -1.54 9.78 22.55 0.22 -1.32 16 13 C -0.16 -5.06 4.54 -20.13 -0.09 -5.15 16 14 C 0.01 0.26 9.80 23.81 0.23 0.50 16 15 C -0.24 -3.42 9.13 23.61 0.22 -3.20 16 16 C 0.54 11.32 6.68 86.33 0.58 11.90 16 17 O -0.56 -17.99 11.62 -4.42 -0.05 -18.04 16 18 N -0.62 -8.92 2.98 -826.42 -2.46 -11.38 16 19 C 0.10 1.41 6.41 86.35 0.55 1.97 16 20 C 0.10 1.44 7.39 86.44 0.64 2.08 16 21 N -0.28 -5.23 3.76 -334.16 -1.26 -6.49 16 22 N -0.12 -3.00 13.22 37.02 0.49 -2.51 16 23 N -0.31 -7.29 12.42 -58.67 -0.73 -8.02 16 24 C -0.04 -0.54 12.03 83.47 1.00 0.47 16 25 C -0.03 -0.43 6.74 41.12 0.28 -0.15 16 26 C 0.19 1.20 6.58 85.46 0.56 1.77 16 27 C 0.01 0.50 6.60 22.55 0.15 0.65 16 28 C -0.22 -10.28 9.97 22.34 0.22 -10.06 16 29 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.12 5.37 5.62 -2.91 -0.02 5.36 16 31 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.18 0.66 6.16 -2.91 -0.02 0.64 16 34 H 0.11 2.02 7.02 -2.39 -0.02 2.00 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.23 1.15 8.06 -2.91 -0.02 1.12 16 39 H 0.14 0.15 5.77 -2.39 -0.01 0.14 16 40 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.12 3.79 7.02 -2.91 -0.02 3.77 16 42 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -90.04 354.59 5.22 -84.82 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.08 Total: 18.56 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 6.03 Total: -30.19 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -3.66 Total: -85.81 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.25 Total: -32.71 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -90.04 5.22 -84.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493613499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.352 kcal (2) G-P(sol) polarization free energy of solvation -90.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds