Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86798 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47365 * 239.99673 * 3 2 1 5 5 H 1.48501 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47341 * 119.99368 * 3 2 1 7 7 C 1.40047 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99951 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00120 * 354.97482 * 9 7 2 11 11 N 1.34776 * 119.99922 * 174.97780 * 9 7 2 12 12 C 1.46965 * 120.59661 * 185.39139 * 11 9 7 13 13 C 1.53371 * 108.63731 * 235.24617 * 12 11 9 14 14 N 1.46962 * 108.63414 * 310.57207 * 13 12 11 15 15 C 1.34767 * 120.59846 * 235.20024 * 14 13 12 16 16 O 1.21546 * 119.99647 * 5.68925 * 15 14 13 17 17 C 1.47872 * 120.00448 * 185.67984 * 15 14 13 18 18 C 1.38946 * 121.41850 * 54.09503 * 17 15 14 19 19 N 1.32578 * 120.33938 * 179.97438 * 18 17 15 20 20 N 1.28382 * 123.43190 * 359.97438 * 19 18 17 21 21 C 1.33462 * 121.85267 * 0.02562 * 20 19 18 22 22 C 1.40586 * 121.74412 * 180.02562 * 21 20 19 23 23 C 1.36119 * 119.61316 * 180.02562 * 22 21 20 24 24 C 1.39364 * 121.12942 * 359.95674 * 23 22 21 25 25 C 1.36344 * 120.88523 * 0.02562 * 24 23 22 26 26 C 1.39851 * 119.50073 * 0.02562 * 25 24 23 27 27 C 1.46972 * 118.81017 * 55.47701 * 14 13 12 28 28 C 1.46962 * 120.59530 * 5.40960 * 11 9 7 29 29 H 0.96995 * 120.00060 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.61187 * 115.50011 * 12 11 9 31 31 H 1.09007 * 109.74787 * 355.07211 * 12 11 9 32 32 H 1.09001 * 109.61390 * 190.82747 * 13 12 11 33 33 H 1.09003 * 109.60747 * 70.31793 * 13 12 11 34 34 H 1.08002 * 119.83680 * 0.02562 * 18 17 15 35 35 H 1.08002 * 120.19521 * 0.02562 * 22 21 20 36 36 H 1.08000 * 119.43226 * 179.97438 * 23 22 21 37 37 H 1.08001 * 119.56015 * 180.29957 * 24 23 22 38 38 H 1.08001 * 120.24888 * 180.02562 * 25 24 23 39 39 H 1.08998 * 109.61084 * 64.26643 * 27 14 13 40 40 H 1.08991 * 109.60992 * 184.77585 * 27 14 13 41 41 H 1.09003 * 109.61259 * 244.49805 * 28 11 9 42 42 H 1.09001 * 109.60841 * 5.00735 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0946 1.6964 -1.2124 5 1 1.2758 2.7465 -0.0006 6 1 3.0944 1.6965 1.2126 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0617 -2.4825 0.0924 11 7 1.9451 -3.6454 -0.1011 12 6 1.2194 -4.9178 -0.2211 13 6 1.6905 -5.8579 0.8954 14 7 3.1599 -5.8787 0.9029 15 6 3.8300 -7.0437 0.8022 16 8 3.2240 -8.0778 0.6003 17 6 5.3024 -7.0639 0.9371 18 6 5.9356 -6.5180 2.0469 19 7 7.2573 -6.5483 2.1460 20 7 8.0218 -7.0669 1.2545 21 6 7.5327 -7.6223 0.1438 22 6 8.3720 -8.1900 -0.8307 23 6 7.8265 -8.7445 -1.9477 24 6 6.4468 -8.7610 -2.1438 25 6 5.6022 -8.2202 -1.2201 26 6 6.1287 -7.6411 -0.0611 27 6 3.8857 -4.6069 1.0285 28 6 3.4146 -3.6663 -0.0936 29 1 -0.4850 0.8400 -0.0004 30 1 1.4288 -5.3683 -1.1913 31 1 0.1482 -4.7414 -0.1232 32 1 1.3113 -6.8631 0.7115 33 1 1.3247 -5.4964 1.8565 34 1 5.3482 -6.0675 2.8332 35 1 9.4433 -8.1862 -0.6939 36 1 8.4740 -9.1795 -2.6947 37 1 6.0409 -9.2120 -3.0372 38 1 4.5346 -8.2389 -1.3823 39 1 3.6727 -4.1584 1.9989 40 1 4.9565 -4.7858 0.9326 41 1 3.7803 -4.0278 -1.0547 42 1 3.7938 -2.6610 0.0903 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528831820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = 8.270727 kcal Electronic energy + Delta-G solvation = -29147.871577 eV Core-core repulsion = 25093.203445 eV Total energy + Delta-G solvation = -4054.668131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.74676 -41.19255 -39.72334 -38.93771 -37.64228 -35.28275 -34.72285 -34.44342 -32.78152 -32.56389 -31.41145 -29.28372 -28.16941 -26.77691 -25.54714 -24.88566 -24.23313 -23.30963 -21.72297 -20.42332 -19.76736 -19.53686 -18.85595 -18.00533 -17.71877 -17.34780 -16.86953 -16.54576 -16.26972 -16.14877 -16.08963 -15.89178 -15.76189 -15.48130 -15.13753 -14.81509 -14.50550 -14.28115 -13.72846 -13.52714 -13.46386 -13.43533 -13.18200 -12.96243 -12.87678 -12.70893 -12.52930 -12.38694 -12.11428 -12.04384 -11.98164 -11.88719 -11.62169 -10.92331 -10.77250 -10.48683 -10.25629 -9.82450 -9.50348 -9.08943 -8.30215 -6.85445 -1.39426 -0.52032 0.49019 1.22026 1.41893 1.44132 1.52880 1.56040 1.74071 2.23256 2.44813 2.69949 2.73631 2.80996 2.95507 3.13464 3.27067 3.56429 3.66618 3.76242 3.80138 3.85401 4.04035 4.09072 4.14539 4.19889 4.29604 4.35971 4.43399 4.46665 4.57332 4.68213 4.73267 4.80168 4.85706 4.96190 4.98004 5.16936 5.21946 5.29477 5.37912 5.65031 5.66856 6.02706 6.08203 6.30891 6.69497 6.87306 7.34929 7.37615 8.43349 8.65240 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.003029 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.610993 B = 9240.341138 C = 9912.482446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.031 3.969 3 Si 0.992 3.008 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.567 4.567 8 H 0.098 0.902 9 C 0.544 3.456 10 O -0.628 6.628 11 N -0.644 5.644 12 C 0.109 3.891 13 C 0.112 3.888 14 N -0.590 5.590 15 C 0.572 3.428 16 O -0.554 6.554 17 C -0.110 4.110 18 C 0.050 3.950 19 N -0.241 5.241 20 N -0.205 5.205 21 C 0.049 3.951 22 C -0.080 4.080 23 C -0.083 4.083 24 C -0.066 4.066 25 C -0.130 4.130 26 C -0.039 4.039 27 C 0.094 3.906 28 C 0.108 3.892 29 H 0.274 0.726 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.196 0.804 35 H 0.169 0.831 36 H 0.182 0.818 37 H 0.168 0.832 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.366 -15.130 -3.252 24.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.184 4.184 3 Si 0.812 3.188 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.603 4.603 8 H 0.116 0.884 9 C 0.350 3.650 10 O -0.515 6.515 11 N -0.381 5.381 12 C -0.015 4.015 13 C -0.011 4.011 14 N -0.321 5.321 15 C 0.359 3.641 16 O -0.433 6.433 17 C -0.126 4.126 18 C -0.102 4.102 19 N -0.092 5.092 20 N -0.059 5.059 21 C -0.082 4.082 22 C -0.101 4.101 23 C -0.103 4.103 24 C -0.086 4.086 25 C -0.149 4.149 26 C -0.048 4.048 27 C -0.029 4.029 28 C -0.016 4.016 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.212 0.788 35 H 0.186 0.814 36 H 0.199 0.801 37 H 0.185 0.815 38 H 0.146 0.854 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.078 0.922 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.447 -15.171 -2.393 24.004 hybrid contribution -1.739 0.488 -0.565 1.892 sum 16.708 -14.684 -2.958 22.439 Atomic orbital electron populations 1.70172 1.09553 1.29014 1.36364 1.26949 0.95424 1.04872 0.91199 0.85144 0.78279 0.74986 0.80426 1.17793 1.20376 1.17558 1.21461 0.94891 0.89531 1.54417 0.88442 1.18651 0.86560 0.83922 0.75828 1.90559 1.16575 1.87136 1.57203 1.48021 1.06121 1.05393 1.78558 1.21541 0.97922 0.84602 0.97471 1.21984 0.78460 1.01227 0.99439 1.48032 1.07323 1.06354 1.70422 1.17990 0.86137 0.83410 0.76553 1.90783 1.69414 1.32937 1.50129 1.21016 0.94065 1.00197 0.97299 1.24514 0.92735 0.95687 0.97313 1.73017 1.04094 1.11591 1.20545 1.73511 1.29995 1.03852 0.98533 1.20696 0.91460 0.99790 0.96206 1.21211 1.01194 0.95967 0.91719 1.21574 0.95218 0.96175 0.97288 1.21669 0.93717 0.94390 0.98776 1.21122 1.01365 0.99274 0.93120 1.18820 0.93483 0.96929 0.95591 1.22540 0.96918 0.82745 1.00668 1.22028 0.80708 1.01320 0.97563 0.91616 0.92408 0.90885 0.87668 0.90718 0.78754 0.81365 0.80059 0.81470 0.85417 0.89276 0.87729 0.92248 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.78 11.84 21.84 0.26 -48.52 16 2 C 0.03 1.65 5.50 85.30 0.47 2.12 16 3 Si 0.99 38.94 29.56 68.60 2.03 40.97 16 4 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 5 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 7 C -0.57 -30.02 8.86 24.83 0.22 -29.80 16 8 H 0.10 4.48 5.67 -2.91 -0.02 4.47 16 9 C 0.54 29.91 7.61 86.36 0.66 30.56 16 10 O -0.63 -40.50 14.46 -4.32 -0.06 -40.56 16 11 N -0.64 -27.36 2.95 -822.23 -2.42 -29.78 16 12 C 0.11 4.09 6.59 86.42 0.57 4.66 16 13 C 0.11 3.43 6.60 86.42 0.57 4.00 16 14 N -0.59 -16.37 2.94 -820.55 -2.41 -18.79 16 15 C 0.57 15.96 6.58 86.80 0.57 16.53 16 16 O -0.55 -18.21 15.33 -3.86 -0.06 -18.27 16 17 C -0.11 -2.73 4.67 -19.66 -0.09 -2.82 16 18 C 0.05 1.13 9.07 84.75 0.77 1.90 16 19 N -0.24 -6.13 11.47 -56.69 -0.65 -6.78 16 20 N -0.21 -5.12 11.52 -52.00 -0.60 -5.72 16 21 C 0.05 1.05 6.69 40.38 0.27 1.32 16 22 C -0.08 -1.10 10.01 22.35 0.22 -0.87 16 23 C -0.08 -0.74 9.94 22.05 0.22 -0.52 16 24 C -0.07 -0.80 9.96 22.10 0.22 -0.58 16 25 C -0.13 -2.60 9.30 22.22 0.21 -2.40 16 26 C -0.04 -0.91 5.77 -21.09 -0.12 -1.03 16 27 C 0.09 2.44 5.87 86.56 0.51 2.95 16 28 C 0.11 3.51 6.50 86.56 0.56 4.07 16 29 H 0.27 14.84 8.29 -92.71 -0.77 14.07 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 3.13 7.00 -2.38 -0.02 3.12 16 32 H 0.11 3.07 6.99 -2.39 -0.02 3.05 16 33 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.20 3.51 7.80 -2.91 -0.02 3.49 16 35 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 36 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 37 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.13 2.92 6.65 -2.91 -0.02 2.90 16 39 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.10 2.26 5.30 -2.39 -0.01 2.25 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.11 3.49 5.35 -2.39 -0.01 3.48 16 Total: -1.00 -79.85 350.70 2.99 -76.86 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 1.09 Total: 20.50 kcal Atomic # 6 Polarization: 24.27 SS G_CDS: 5.82 Total: 30.09 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -5.83 Total: -109.59 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -0.12 Total: -58.83 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -79.85 2.99 -76.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528831820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.135 kcal (2) G-P(sol) polarization free energy of solvation -79.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds