Wall clock time and date at job start Sat Apr 11 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34711 * 117.00009 * 2 1 4 4 O 1.21468 * 119.99945 * 359.97438 * 3 2 1 5 5 C 1.47724 * 119.99977 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.14894 * 3.18808 * 5 3 2 7 7 C 1.37929 * 119.84681 * 180.32066 * 6 5 3 8 8 C 1.38394 * 120.14865 * 359.65624 * 7 6 5 9 9 C 1.38345 * 120.29982 * 359.97438 * 8 7 6 10 10 C 1.37958 * 120.15482 * 0.04905 * 9 8 7 11 11 C 1.50704 * 120.07891 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46982 * 257.26452 * 11 10 9 13 13 O 1.21277 * 119.99934 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99918 * 179.97438 * 12 11 10 15 15 C 1.39468 * 120.00162 * 175.20514 * 14 12 11 16 16 C 1.38593 * 119.58134 * 174.49430 * 15 14 12 17 17 C 1.40810 * 118.79803 * 179.71720 * 16 15 14 18 18 C 1.41538 * 120.99879 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00110 * 150.73678 * 18 17 16 20 20 C 1.40023 * 120.00012 * 330.73970 * 18 17 16 21 21 N 1.30742 * 120.00264 * 2.02878 * 20 18 17 22 22 Si 1.86805 * 119.99851 * 182.03219 * 20 18 17 23 23 H 1.48496 * 109.47363 * 89.99960 * 22 20 18 24 24 H 1.48510 * 109.46945 * 209.99545 * 22 20 18 25 25 H 1.48493 * 109.47189 * 329.99654 * 22 20 18 26 26 C 1.41176 * 118.00180 * 0.02562 * 17 16 15 27 27 C 1.37585 * 119.02087 * 359.97438 * 26 17 16 28 28 N 1.32086 * 121.10638 * 0.02562 * 27 26 17 29 29 H 1.08998 * 109.46651 * 299.99909 * 1 2 3 30 30 H 1.08997 * 109.47155 * 59.99773 * 1 2 3 31 31 H 1.09002 * 109.46833 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.07938 * 359.97438 * 6 5 3 33 33 H 1.07999 * 119.92347 * 179.68396 * 7 6 5 34 34 H 1.07995 * 119.84786 * 180.02562 * 8 7 6 35 35 H 1.08002 * 119.92318 * 180.02562 * 9 8 7 36 36 H 1.08995 * 109.47026 * 137.26286 * 11 10 9 37 37 H 1.09000 * 109.47117 * 17.26264 * 11 10 9 38 38 H 0.97007 * 119.99686 * 355.20494 * 14 12 11 39 39 H 1.08002 * 120.60287 * 359.74507 * 16 15 14 40 40 H 0.97003 * 119.99984 * 180.02562 * 21 20 18 41 41 H 1.08006 * 120.49172 * 179.97438 * 26 17 16 42 42 H 1.08000 * 119.45002 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3023 0.1102 -0.0683 7 6 5.6793 0.1893 -0.0617 8 6 6.3045 1.4222 0.0046 9 6 5.5541 2.5830 0.0641 10 6 4.1761 2.5183 0.0588 11 6 3.3603 3.7838 0.1243 12 6 2.8231 3.9635 1.5209 13 8 3.0772 3.1443 2.3784 14 7 2.0603 5.0344 1.8169 15 6 1.4808 5.1500 3.0802 16 6 0.7939 6.3064 3.4146 17 6 0.2101 6.4032 4.6923 18 6 -0.5013 7.5628 5.0828 19 1 -1.3074 7.4867 5.7975 20 6 -0.1599 8.8087 4.5425 21 7 0.7894 8.8953 3.6477 22 14 -1.0609 10.3471 5.1002 23 1 -0.3565 10.9380 6.2663 24 1 -1.0922 11.3325 3.9895 25 1 -2.4501 9.9940 5.4880 26 6 0.3565 5.3092 5.5725 27 6 1.0567 4.2023 5.1509 28 7 1.5895 4.1511 3.9433 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.8158 -0.8525 -0.1200 33 1 6.2710 -0.7130 -0.1089 34 1 7.3829 1.4785 0.0090 35 1 6.0483 3.5419 0.1153 36 1 2.5300 3.7177 -0.5786 37 1 3.9893 4.6354 -0.1353 38 1 1.9145 5.7248 1.1513 39 1 0.7077 7.1185 2.7078 40 1 1.0261 9.7584 3.2737 41 1 -0.0746 5.3405 6.5623 42 1 1.1733 3.3617 5.8187 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000537185941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:39 Heat of formation + Delta-G solvation = -48.138810 kcal Electronic energy + Delta-G solvation = -28782.117913 eV Core-core repulsion = 24692.710929 eV Total energy + Delta-G solvation = -4089.406983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.80213 -39.45755 -38.77001 -37.57433 -36.37269 -34.23757 -33.60357 -32.72662 -31.60684 -30.45610 -29.03870 -27.90926 -27.08536 -25.93807 -23.99557 -22.52234 -21.86295 -21.42585 -20.69593 -19.51721 -17.95697 -17.59846 -17.06165 -16.72247 -16.25402 -15.97936 -15.59175 -15.42353 -15.15676 -14.70533 -14.27078 -14.11488 -13.99026 -13.58232 -13.49192 -13.38657 -12.94456 -12.76281 -12.60134 -12.47153 -12.36046 -12.17728 -11.83148 -11.73457 -11.37193 -11.23345 -11.12496 -10.86383 -10.76447 -10.24870 -10.09552 -10.06765 -9.63242 -9.37904 -9.33803 -9.10531 -8.86439 -7.85964 -7.69925 -6.91920 -6.63583 -4.60865 0.66145 1.22445 2.54137 2.66114 2.72210 2.84820 3.03746 3.08124 3.25606 3.57449 3.61067 3.89588 3.97253 4.57991 4.61683 4.75427 4.78657 4.85436 5.09132 5.16278 5.19818 5.29039 5.30054 5.46356 5.51475 5.62717 5.73422 5.74127 5.87729 6.06816 6.14257 6.24131 6.29811 6.50562 6.63803 6.72479 6.74741 6.84835 7.01831 7.22750 7.45647 7.55832 7.79903 7.87137 8.05917 8.29716 8.50617 8.76867 8.82255 9.02709 9.75334 10.17048 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.002834 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.080935 B = 9877.424508 C =10448.838787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.510 3.490 4 O -0.493 6.493 5 C -0.108 4.108 6 C -0.063 4.063 7 C -0.138 4.138 8 C -0.084 4.084 9 C -0.123 4.123 10 C 0.007 3.993 11 C -0.118 4.118 12 C 0.520 3.480 13 O -0.485 6.485 14 N -0.657 5.657 15 C 0.338 3.662 16 C -0.238 4.238 17 C 0.137 3.863 18 C -0.454 4.454 19 H 0.079 0.921 20 C 0.072 3.928 21 N -0.803 5.803 22 Si 0.918 3.082 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.280 4.280 27 C 0.113 3.887 28 N -0.549 5.549 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.407 0.593 39 H 0.143 0.857 40 H 0.279 0.721 41 H 0.101 0.899 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.604 -11.655 -12.350 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.355 3.645 4 O -0.381 6.381 5 C -0.109 4.109 6 C -0.081 4.081 7 C -0.156 4.156 8 C -0.102 4.102 9 C -0.141 4.141 10 C 0.006 3.994 11 C -0.158 4.158 12 C 0.304 3.696 13 O -0.356 6.356 14 N -0.302 5.302 15 C 0.112 3.888 16 C -0.263 4.263 17 C 0.129 3.871 18 C -0.486 4.486 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.430 5.430 22 Si 0.743 3.257 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.304 4.304 27 C -0.042 4.042 28 N -0.267 5.267 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.242 0.758 39 H 0.160 0.840 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.159 -12.589 -12.182 18.925 hybrid contribution -1.075 1.978 0.278 2.268 sum 6.085 -10.612 -11.903 17.068 Atomic orbital electron populations 1.23257 0.75926 1.03479 1.02884 1.86491 1.23614 1.32831 1.84581 1.21151 0.89079 0.81513 0.72776 1.90815 1.66818 1.35406 1.45048 1.18862 0.89059 0.94424 1.08594 1.21395 0.93975 0.97618 0.95126 1.21106 0.94265 0.98052 1.02169 1.21363 1.00191 0.92351 0.96275 1.21003 0.92394 0.99278 1.01417 1.19420 0.93585 0.92776 0.93606 1.21006 1.01207 0.95640 0.97937 1.20086 0.78784 0.81714 0.88994 1.90759 1.55135 1.41183 1.48487 1.43350 1.49448 1.23791 1.13594 1.18267 0.93901 0.91432 0.85151 1.21961 1.07719 0.97221 0.99411 1.17618 0.88750 0.91357 0.89376 1.19555 1.15899 0.90917 1.22228 0.90237 1.25936 0.94065 1.01125 0.93322 1.69696 1.24407 1.26737 1.22152 0.86147 0.80496 0.80061 0.79001 1.19450 1.20182 1.18588 1.21956 1.09951 0.98101 1.00371 1.21741 0.94404 0.96192 0.91818 1.67186 1.26562 1.29056 1.03945 0.91518 0.91936 0.88184 0.84608 0.85284 0.85364 0.85017 0.85811 0.88619 0.75845 0.83953 0.91001 0.88048 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -4.98 9.82 -40.52 -0.40 -5.38 16 3 C 0.51 8.18 7.78 34.61 0.27 8.45 16 4 O -0.49 -8.97 12.07 -19.24 -0.23 -9.21 16 5 C -0.11 -1.58 5.63 -104.98 -0.59 -2.17 16 6 C -0.06 -0.73 9.62 -39.17 -0.38 -1.11 16 7 C -0.14 -1.34 10.03 -39.64 -0.40 -1.74 16 8 C -0.08 -0.82 10.04 -39.48 -0.40 -1.22 16 9 C -0.12 -1.44 9.66 -39.64 -0.38 -1.82 16 10 C 0.01 0.10 4.52 -104.21 -0.47 -0.37 16 11 C -0.12 -1.75 5.14 -29.03 -0.15 -1.90 16 12 C 0.52 10.54 6.26 -10.98 -0.07 10.47 16 13 O -0.48 -11.74 14.15 5.56 0.08 -11.66 16 14 N -0.66 -13.85 5.39 -11.49 -0.06 -13.91 16 15 C 0.34 8.60 7.40 -154.71 -1.15 7.46 16 16 C -0.24 -6.26 8.64 -38.48 -0.33 -6.59 16 17 C 0.14 3.72 5.62 -106.55 -0.60 3.12 16 18 C -0.45 -11.95 9.13 -37.66 -0.34 -12.30 16 19 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 20 C 0.07 1.78 5.44 -17.35 -0.09 1.68 16 21 N -0.80 -20.16 10.42 55.55 0.58 -19.58 16 22 Si 0.92 18.46 29.56 -169.99 -5.02 13.43 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 25 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 26 C -0.28 -7.10 9.90 -38.71 -0.38 -7.48 16 27 C 0.11 2.83 11.15 -17.68 -0.20 2.63 16 28 N -0.55 -14.65 7.89 -12.53 -0.10 -14.74 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.14 1.34 7.62 -52.49 -0.40 0.94 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.28 8.01 -52.49 -0.42 0.86 16 36 H 0.12 1.80 6.07 -51.93 -0.32 1.49 16 37 H 0.10 1.10 7.97 -51.93 -0.41 0.68 16 38 H 0.41 7.16 8.70 -40.82 -0.36 6.81 16 39 H 0.14 3.73 5.90 -52.49 -0.31 3.42 16 40 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 41 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 42 H 0.12 2.67 8.06 -52.49 -0.42 2.24 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -34.86 364.20 -8.98 -43.84 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -4.72 Total: 13.11 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -4.59 Total: -1.39 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.42 Total: -48.24 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.55 Total: -26.24 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.86 -8.98 -43.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537185941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.299 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds