Wall clock time and date at job start Sat Apr 11 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39739 * 120.08099 * 158.58457 * 3 2 1 5 5 C 1.38039 * 120.13841 * 179.97438 * 4 3 2 6 6 C 1.38105 * 120.30447 * 359.71689 * 5 4 3 7 7 C 1.39638 * 120.15926 * 0.56135 * 6 5 4 8 8 C 1.47864 * 120.06934 * 179.71596 * 7 6 5 9 9 N 1.31228 * 126.38088 * 179.69837 * 8 7 6 10 10 N 1.28656 * 109.25357 * 180.02562 * 9 8 7 11 11 C 1.30387 * 109.52455 * 0.02562 * 10 9 8 12 12 C 1.50698 * 126.18531 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47407 * 90.02789 * 12 11 10 14 14 C 1.48559 * 111.00066 * 69.86567 * 13 12 11 15 15 C 1.54387 * 104.58955 * 159.04379 * 14 13 12 16 16 C 1.54259 * 105.06271 * 336.15098 * 15 14 13 17 17 O 1.42891 * 110.32753 * 118.99791 * 16 15 14 18 18 C 1.50701 * 110.32157 * 241.10373 * 16 15 14 19 19 H 1.08005 * 119.99834 * 118.53799 * 18 16 15 20 20 C 1.37878 * 120.00375 * 298.54694 * 18 16 15 21 21 N 1.31512 * 119.99477 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00285 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47125 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47045 * 119.99736 * 22 20 18 25 25 H 1.48498 * 109.47066 * 239.99964 * 22 20 18 26 26 C 1.48560 * 111.00239 * 185.29090 * 13 12 11 27 27 O 1.34404 * 107.62239 * 0.22485 * 11 10 9 28 28 C 1.39319 * 119.85891 * 359.44257 * 7 6 5 29 29 H 1.08007 * 119.92892 * 359.95557 * 4 3 2 30 30 H 1.07999 * 119.85032 * 180.02562 * 5 4 3 31 31 H 1.08000 * 119.92428 * 180.30050 * 6 5 4 32 32 H 1.08996 * 109.47595 * 330.01871 * 12 11 10 33 33 H 1.09004 * 109.46561 * 210.02010 * 12 11 10 34 34 H 1.08999 * 110.40971 * 40.26912 * 14 13 12 35 35 H 1.08999 * 110.41180 * 277.82119 * 14 13 12 36 36 H 1.09000 * 110.32138 * 95.04641 * 15 14 13 37 37 H 1.09003 * 110.32046 * 217.14933 * 15 14 13 38 38 H 0.96701 * 113.99998 * 61.45138 * 17 16 15 39 39 H 0.97001 * 119.99820 * 180.02562 * 21 20 18 40 40 H 1.09004 * 110.40940 * 82.17346 * 26 13 12 41 41 H 1.08996 * 110.50752 * 319.78735 * 26 13 12 42 42 H 1.07999 * 120.15044 * 180.25341 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 1.1267 -0.4415 5 6 4.6483 1.1288 -0.4415 6 6 5.3468 0.0221 -0.0004 7 6 4.6602 -1.1121 0.4380 8 6 5.4102 -2.2982 0.9039 9 7 4.8945 -3.4214 1.3449 10 7 5.8446 -4.2285 1.6627 11 6 6.9950 -3.6569 1.4393 12 6 8.3525 -4.2653 1.6800 13 7 8.7955 -4.9691 0.4690 14 6 9.1162 -4.0084 -0.6178 15 6 10.0409 -4.7948 -1.5717 16 6 10.6701 -5.9004 -0.6991 17 8 10.3170 -7.1906 -1.2016 18 6 12.1688 -5.7469 -0.6602 19 1 12.6689 -5.5666 0.2800 20 6 12.9015 -5.8366 -1.8247 21 7 12.2924 -6.0555 -2.9695 22 14 14.7591 -5.6457 -1.7765 23 1 15.1960 -5.4068 -0.3775 24 1 15.3974 -6.8841 -2.2903 25 1 15.1604 -4.4938 -2.6235 26 6 10.0728 -5.6889 0.7086 27 8 6.7510 -2.4248 0.9609 28 6 3.2671 -1.1215 0.4409 29 1 2.7276 1.9970 -0.7837 30 1 5.1845 2.0017 -0.7833 31 1 6.4268 0.0322 0.0015 32 1 8.2928 -4.9706 2.5089 33 1 9.0656 -3.4777 1.9238 34 1 9.6360 -3.1389 -0.2154 35 1 8.2070 -3.7029 -1.1357 36 1 9.4612 -5.2363 -2.3823 37 1 10.8149 -4.1407 -1.9733 38 1 10.6288 -7.3612 -2.1009 39 1 12.8079 -6.1189 -3.7888 40 1 9.8838 -6.6487 1.1895 41 1 10.7431 -5.0842 1.3193 42 1 2.7313 -1.9947 0.7828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:50 Heat of formation + Delta-G solvation = 59.918437 kcal Electronic energy + Delta-G solvation = -27845.419670 eV Core-core repulsion = 23792.991151 eV Total energy + Delta-G solvation = -4052.428519 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.23141 -39.99239 -38.57758 -36.90248 -36.25700 -35.20232 -33.37115 -32.19532 -31.98608 -31.38962 -29.30549 -28.11144 -26.45378 -24.76878 -24.61373 -24.04207 -22.36609 -22.24479 -20.53833 -19.63335 -19.53689 -17.49414 -17.27196 -16.98720 -16.79964 -16.07844 -15.77669 -15.51339 -15.13812 -14.81785 -14.57134 -14.44201 -14.34708 -13.69123 -13.62594 -13.46089 -13.25048 -13.03077 -12.72647 -12.48275 -12.41011 -12.32630 -12.08334 -11.90938 -11.71567 -11.38882 -11.29771 -11.16176 -11.01607 -10.74108 -10.64299 -10.51523 -10.42766 -9.97811 -9.62863 -9.26423 -8.98403 -8.67133 -8.25640 -8.08386 -6.28671 -4.38104 -0.06083 0.33552 1.32148 1.91696 2.20439 2.25972 2.59590 3.15484 3.25043 3.27918 3.30986 3.32530 3.48382 4.10508 4.21952 4.28435 4.35257 4.42365 4.46358 4.68096 4.88917 4.98879 5.02509 5.14177 5.17405 5.31597 5.37050 5.51174 5.55774 5.59250 5.65186 5.76086 5.78407 5.83923 5.99921 6.04437 6.24957 6.44356 6.75945 6.89137 7.01199 7.13302 7.27681 7.35215 7.45607 7.71767 8.08772 8.19337 8.65134 9.31264 9.48548 10.78037 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.002169 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.560823 B =12908.009134 C =13495.990615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.255 3.745 3 C -0.027 4.027 4 C -0.051 4.051 5 C -0.117 4.117 6 C -0.056 4.056 7 C -0.013 4.013 8 C 0.188 3.812 9 N -0.268 5.268 10 N -0.271 5.271 11 C 0.200 3.800 12 C 0.133 3.867 13 N -0.504 5.504 14 C 0.028 3.972 15 C -0.118 4.118 16 C 0.254 3.746 17 O -0.584 6.584 18 C -0.539 4.539 19 H 0.062 0.938 20 C 0.070 3.930 21 N -0.893 5.893 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.283 1.283 26 C 0.053 3.947 27 O -0.217 6.217 28 C -0.023 4.023 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.380 0.620 39 H 0.267 0.733 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.218 15.760 5.497 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.061 4.061 3 C -0.031 4.031 4 C -0.072 4.072 5 C -0.135 4.135 6 C -0.076 4.076 7 C -0.014 4.014 8 C -0.020 4.020 9 N -0.116 5.116 10 N -0.119 5.119 11 C -0.010 4.010 12 C 0.003 3.997 13 N -0.230 5.230 14 C -0.099 4.099 15 C -0.157 4.157 16 C 0.214 3.786 17 O -0.393 6.393 18 C -0.577 4.577 19 H 0.080 0.920 20 C -0.133 4.133 21 N -0.532 5.532 22 Si 0.727 3.273 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.209 1.209 26 C -0.073 4.073 27 O -0.096 6.096 28 C -0.045 4.045 29 H 0.159 0.841 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.230 0.770 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.510 14.391 6.133 21.336 hybrid contribution 3.221 1.587 -0.802 3.679 sum -11.289 15.978 5.332 20.277 Atomic orbital electron populations 1.81293 1.11880 1.06954 1.08131 1.25478 0.92389 0.94176 0.94041 1.15738 0.84670 0.96138 1.06505 1.21420 0.94472 0.96565 0.94702 1.21061 0.93434 0.98827 1.00145 1.21586 1.01349 0.91238 0.93416 1.16965 0.91324 0.89388 1.03765 1.25133 0.78132 0.97084 1.01651 1.74706 1.24839 0.98695 1.13397 1.74461 0.95262 1.23504 1.18646 1.28102 0.99731 0.78845 0.94321 1.20793 0.84614 0.97550 0.96723 1.65523 1.31096 1.22509 1.03879 1.23270 0.98745 0.94158 0.93767 1.22864 0.96771 0.98946 0.97130 1.19188 0.91575 0.81013 0.86822 1.86139 1.80896 1.35868 1.36390 1.21716 0.91757 1.50114 0.94120 0.91995 1.25010 0.99119 0.93895 0.95257 1.69713 1.35995 1.49036 0.98453 0.86421 0.84815 0.77829 0.78230 1.19679 1.20755 1.20912 1.23141 0.86833 0.97751 0.99620 1.84829 1.25559 1.34783 1.64429 1.21172 0.91935 0.97489 0.93900 0.84136 0.83674 0.83976 0.85996 0.91211 0.94190 0.92170 0.92529 0.90713 0.76959 0.92273 0.90067 0.92892 0.83162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.53 18.54 41.84 0.78 -3.75 16 2 C 0.25 2.19 15.32 -22.47 -0.34 1.84 16 3 C -0.03 -0.18 5.73 -106.99 -0.61 -0.79 16 4 C -0.05 -0.23 9.75 -39.09 -0.38 -0.61 16 5 C -0.12 -0.49 10.02 -39.70 -0.40 -0.89 16 6 C -0.06 -0.36 9.72 -39.11 -0.38 -0.74 16 7 C -0.01 -0.11 5.87 -105.03 -0.62 -0.73 16 8 C 0.19 2.38 7.99 -13.87 -0.11 2.27 16 9 N -0.27 -4.06 11.91 32.07 0.38 -3.68 16 10 N -0.27 -4.47 12.22 32.58 0.40 -4.07 16 11 C 0.20 2.97 7.47 -12.89 -0.10 2.88 16 12 C 0.13 1.87 5.44 -4.97 -0.03 1.84 16 13 N -0.50 -9.08 5.36 -231.41 -1.24 -10.32 16 14 C 0.03 0.51 5.98 -2.18 -0.01 0.50 16 15 C -0.12 -2.61 5.55 -25.35 -0.14 -2.75 16 16 C 0.25 5.99 1.05 -90.39 -0.10 5.89 16 17 O -0.58 -14.93 12.94 -35.23 -0.46 -15.39 16 18 C -0.54 -13.58 8.08 -34.44 -0.28 -13.86 16 19 H 0.06 1.54 7.58 -52.48 -0.40 1.14 16 20 C 0.07 1.76 5.02 -17.82 -0.09 1.67 16 21 N -0.89 -22.93 10.81 55.43 0.60 -22.33 16 22 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.05 1.05 5.76 -2.18 -0.01 1.03 16 27 O -0.22 -2.92 10.66 4.06 0.04 -2.88 16 28 C -0.02 -0.18 9.40 -38.76 -0.36 -0.55 16 29 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 30 H 0.15 0.24 8.06 -52.49 -0.42 -0.18 16 31 H 0.14 0.82 7.92 -52.49 -0.42 0.41 16 32 H 0.12 1.51 8.13 -51.93 -0.42 1.09 16 33 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 34 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 35 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 36 H 0.06 1.31 7.98 -51.93 -0.41 0.90 16 37 H 0.07 1.75 7.24 -51.93 -0.38 1.38 16 38 H 0.38 9.85 7.32 45.56 0.33 10.19 16 39 H 0.27 6.57 8.31 -40.82 -0.34 6.24 16 40 H 0.08 1.61 8.08 -51.93 -0.42 1.19 16 41 H 0.05 0.97 7.56 -51.93 -0.39 0.58 16 42 H 0.15 1.24 7.86 -52.49 -0.41 0.82 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -30.22 369.36 -7.05 -37.26 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.14 Total: 7.86 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -3.96 Total: -2.97 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.91 Total: -44.15 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.41 Total: -18.27 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.22 -7.05 -37.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.183 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds