Wall clock time and date at job start Sat Apr 11 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39739 * 120.08099 * 158.58457 * 3 2 1 5 5 C 1.38039 * 120.13841 * 179.97438 * 4 3 2 6 6 C 1.38105 * 120.30447 * 359.71689 * 5 4 3 7 7 C 1.39638 * 120.15926 * 0.56135 * 6 5 4 8 8 C 1.47864 * 120.06934 * 179.71596 * 7 6 5 9 9 N 1.31228 * 126.38088 * 179.69837 * 8 7 6 10 10 N 1.28656 * 109.25357 * 180.02562 * 9 8 7 11 11 C 1.30387 * 109.52455 * 0.02562 * 10 9 8 12 12 C 1.50698 * 126.18531 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47407 * 90.02789 * 12 11 10 14 14 C 1.48559 * 111.00066 * 69.86567 * 13 12 11 15 15 C 1.54387 * 104.58955 * 159.04379 * 14 13 12 16 16 C 1.54259 * 105.06271 * 336.15098 * 15 14 13 17 17 O 1.42891 * 110.32753 * 118.99791 * 16 15 14 18 18 C 1.50701 * 110.32157 * 241.10373 * 16 15 14 19 19 H 1.08005 * 119.99834 * 118.53799 * 18 16 15 20 20 C 1.37878 * 120.00375 * 298.54694 * 18 16 15 21 21 N 1.31512 * 119.99477 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00285 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47125 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47045 * 119.99736 * 22 20 18 25 25 H 1.48498 * 109.47066 * 239.99964 * 22 20 18 26 26 C 1.48560 * 111.00239 * 185.29090 * 13 12 11 27 27 O 1.34404 * 107.62239 * 0.22485 * 11 10 9 28 28 C 1.39319 * 119.85891 * 359.44257 * 7 6 5 29 29 H 1.08007 * 119.92892 * 359.95557 * 4 3 2 30 30 H 1.07999 * 119.85032 * 180.02562 * 5 4 3 31 31 H 1.08000 * 119.92428 * 180.30050 * 6 5 4 32 32 H 1.08996 * 109.47595 * 330.01871 * 12 11 10 33 33 H 1.09004 * 109.46561 * 210.02010 * 12 11 10 34 34 H 1.08999 * 110.40971 * 40.26912 * 14 13 12 35 35 H 1.08999 * 110.41180 * 277.82119 * 14 13 12 36 36 H 1.09000 * 110.32138 * 95.04641 * 15 14 13 37 37 H 1.09003 * 110.32046 * 217.14933 * 15 14 13 38 38 H 0.96701 * 113.99998 * 61.45138 * 17 16 15 39 39 H 0.97001 * 119.99820 * 180.02562 * 21 20 18 40 40 H 1.09004 * 110.40940 * 82.17346 * 26 13 12 41 41 H 1.08996 * 110.50752 * 319.78735 * 26 13 12 42 42 H 1.07999 * 120.15044 * 180.25341 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 1.1267 -0.4415 5 6 4.6483 1.1288 -0.4415 6 6 5.3468 0.0221 -0.0004 7 6 4.6602 -1.1121 0.4380 8 6 5.4102 -2.2982 0.9039 9 7 4.8945 -3.4214 1.3449 10 7 5.8446 -4.2285 1.6627 11 6 6.9950 -3.6569 1.4393 12 6 8.3525 -4.2653 1.6800 13 7 8.7955 -4.9691 0.4690 14 6 9.1162 -4.0084 -0.6178 15 6 10.0409 -4.7948 -1.5717 16 6 10.6701 -5.9004 -0.6991 17 8 10.3170 -7.1906 -1.2016 18 6 12.1688 -5.7469 -0.6602 19 1 12.6689 -5.5666 0.2800 20 6 12.9015 -5.8366 -1.8247 21 7 12.2924 -6.0555 -2.9695 22 14 14.7591 -5.6457 -1.7765 23 1 15.1960 -5.4068 -0.3775 24 1 15.3974 -6.8841 -2.2903 25 1 15.1604 -4.4938 -2.6235 26 6 10.0728 -5.6889 0.7086 27 8 6.7510 -2.4248 0.9609 28 6 3.2671 -1.1215 0.4409 29 1 2.7276 1.9970 -0.7837 30 1 5.1845 2.0017 -0.7833 31 1 6.4268 0.0322 0.0015 32 1 8.2928 -4.9706 2.5089 33 1 9.0656 -3.4777 1.9238 34 1 9.6360 -3.1389 -0.2154 35 1 8.2070 -3.7029 -1.1357 36 1 9.4612 -5.2363 -2.3823 37 1 10.8149 -4.1407 -1.9733 38 1 10.6288 -7.3612 -2.1009 39 1 12.8079 -6.1189 -3.7888 40 1 9.8838 -6.6487 1.1895 41 1 10.7431 -5.0842 1.3193 42 1 2.7313 -1.9947 0.7828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:49 Heat of formation + Delta-G solvation = 35.145593 kcal Electronic energy + Delta-G solvation = -27846.493901 eV Core-core repulsion = 23792.991151 eV Total energy + Delta-G solvation = -4053.502750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.27833 -40.54099 -40.13964 -37.63795 -37.32196 -36.86668 -34.27313 -34.14526 -32.61324 -32.46799 -30.53458 -29.76187 -27.81584 -26.03386 -25.53273 -25.00476 -23.51586 -22.96255 -21.96217 -21.33213 -20.27241 -19.04345 -18.55649 -18.03291 -17.36490 -17.20569 -16.92751 -16.67658 -16.48699 -16.05369 -15.91797 -15.28533 -15.20366 -14.95775 -14.80261 -14.35509 -14.28115 -14.16453 -13.96552 -13.68634 -13.54031 -13.29445 -13.24341 -13.03312 -12.93431 -12.78493 -12.72005 -12.54300 -12.42231 -12.33780 -12.17402 -12.02364 -11.76870 -11.38493 -11.06691 -10.59122 -10.13709 -10.10768 -9.76513 -9.50585 -8.19089 -6.35198 -0.71483 -0.25725 0.47961 0.97342 1.27769 1.42091 1.46691 1.54955 1.56029 1.88539 2.40175 2.54040 2.72782 2.75558 3.06398 3.07750 3.20558 3.68025 3.80093 3.90527 3.91707 3.97800 4.03918 4.12281 4.22028 4.25487 4.37228 4.43309 4.48817 4.49766 4.56659 4.67697 4.80124 4.84637 5.06435 5.11765 5.17135 5.19225 5.25850 5.41678 5.59520 5.61902 5.63678 5.82725 5.93327 6.23184 6.35393 6.72793 7.13354 7.36757 7.48935 8.86445 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.002169 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.560823 B =12908.009134 C =13495.990615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.279 3.721 3 C -0.035 4.035 4 C -0.027 4.027 5 C -0.103 4.103 6 C -0.047 4.047 7 C -0.042 4.042 8 C 0.208 3.792 9 N -0.306 5.306 10 N -0.301 5.301 11 C 0.192 3.808 12 C 0.136 3.864 13 N -0.519 5.519 14 C 0.042 3.958 15 C -0.110 4.110 16 C 0.233 3.767 17 O -0.597 6.597 18 C -0.555 4.555 19 H 0.062 0.938 20 C 0.027 3.973 21 N -0.913 5.913 22 Si 0.959 3.041 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.279 1.279 26 C 0.063 3.937 27 O -0.216 6.216 28 C -0.024 4.024 29 H 0.172 0.828 30 H 0.183 0.817 31 H 0.152 0.848 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.055 0.945 38 H 0.373 0.627 39 H 0.268 0.732 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 18.856 5.867 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.035 4.035 3 C -0.038 4.038 4 C -0.047 4.047 5 C -0.121 4.121 6 C -0.067 4.067 7 C -0.044 4.044 8 C 0.000 4.000 9 N -0.153 5.153 10 N -0.147 5.147 11 C -0.019 4.019 12 C 0.007 3.993 13 N -0.245 5.245 14 C -0.086 4.086 15 C -0.149 4.149 16 C 0.194 3.806 17 O -0.405 6.405 18 C -0.593 4.593 19 H 0.080 0.920 20 C -0.173 4.173 21 N -0.553 5.553 22 Si 0.785 3.215 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.205 1.205 26 C -0.064 4.064 27 O -0.095 6.095 28 C -0.046 4.046 29 H 0.190 0.810 30 H 0.201 0.799 31 H 0.170 0.830 32 H 0.156 0.844 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.222 0.778 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.849 17.487 6.524 23.242 hybrid contribution 2.950 0.738 -0.967 3.191 sum -10.899 18.225 5.557 21.951 Atomic orbital electron populations 1.81318 1.13330 1.08566 1.10049 1.25693 0.92557 0.92727 0.92559 1.15733 0.83537 0.96773 1.07773 1.21831 0.94792 0.96217 0.91883 1.21456 0.93196 0.98963 0.98472 1.21822 1.01994 0.90769 0.92153 1.17066 0.91396 0.89339 1.06573 1.25828 0.77906 0.97239 0.99061 1.74648 1.25023 0.99841 1.15804 1.74375 0.96115 1.24666 1.19565 1.28101 0.99548 0.79337 0.94914 1.20890 0.84635 0.98557 0.95204 1.65380 1.30112 1.23387 1.05641 1.23105 0.98120 0.94169 0.93187 1.22634 0.96567 0.98595 0.97108 1.19543 0.91550 0.80403 0.89143 1.86139 1.81011 1.37457 1.35938 1.21992 0.92892 1.50235 0.94205 0.91966 1.25706 1.02891 0.93712 0.95038 1.69811 1.37225 1.49426 0.98821 0.85493 0.80196 0.77494 0.78311 1.19103 1.21080 1.20520 1.22955 0.87809 0.98276 0.97311 1.84823 1.25892 1.34255 1.64525 1.21069 0.91770 0.97704 0.94034 0.81025 0.79943 0.83045 0.84440 0.88426 0.92106 0.91777 0.94851 0.92636 0.77805 0.92285 0.90541 0.91169 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.02 18.54 19.00 0.35 -9.67 16 2 C 0.28 4.50 15.32 88.33 1.35 5.85 16 3 C -0.03 -0.39 5.73 -21.40 -0.12 -0.51 16 4 C -0.03 -0.12 9.75 22.59 0.22 0.10 16 5 C -0.10 -0.37 10.02 22.19 0.22 -0.15 16 6 C -0.05 -0.46 9.72 22.58 0.22 -0.24 16 7 C -0.04 -0.69 5.87 -20.13 -0.12 -0.81 16 8 C 0.21 5.14 7.99 87.33 0.70 5.84 16 9 N -0.31 -9.41 11.91 -166.30 -1.98 -11.39 16 10 N -0.30 -9.95 12.22 -165.34 -2.02 -11.97 16 11 C 0.19 5.53 7.47 88.32 0.66 6.19 16 12 C 0.14 3.56 5.44 85.56 0.47 4.03 16 13 N -0.52 -18.09 5.36 -886.03 -4.75 -22.84 16 14 C 0.04 1.48 5.98 86.45 0.52 1.99 16 15 C -0.11 -4.90 5.55 31.49 0.17 -4.73 16 16 C 0.23 11.05 1.05 -10.65 -0.01 11.04 16 17 O -0.60 -31.30 12.94 -148.98 -1.93 -33.23 16 18 C -0.55 -27.92 8.08 25.60 0.21 -27.71 16 19 H 0.06 3.05 7.58 -2.91 -0.02 3.03 16 20 C 0.03 1.36 5.02 84.66 0.43 1.78 16 21 N -0.91 -47.58 10.81 21.45 0.23 -47.35 16 22 Si 0.96 40.21 29.54 68.60 2.03 42.23 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 26 C 0.06 2.44 5.76 86.45 0.50 2.94 16 27 O -0.22 -5.51 10.66 -8.40 -0.09 -5.60 16 28 C -0.02 -0.36 9.40 22.80 0.21 -0.14 16 29 H 0.17 -0.16 8.06 -2.91 -0.02 -0.18 16 30 H 0.18 -0.57 8.06 -2.91 -0.02 -0.59 16 31 H 0.15 1.21 7.92 -2.91 -0.02 1.19 16 32 H 0.14 3.15 8.13 -2.39 -0.02 3.13 16 33 H 0.10 2.04 7.88 -2.38 -0.02 2.02 16 34 H 0.06 1.89 7.82 -2.39 -0.02 1.87 16 35 H 0.06 2.21 8.12 -2.39 -0.02 2.19 16 36 H 0.03 1.59 7.98 -2.39 -0.02 1.57 16 37 H 0.05 2.63 7.24 -2.39 -0.02 2.62 16 38 H 0.37 20.08 7.32 -74.06 -0.54 19.54 16 39 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 40 H 0.08 3.00 8.08 -2.39 -0.02 2.98 16 41 H 0.07 2.43 7.56 -2.39 -0.02 2.42 16 42 H 0.14 2.37 7.86 -2.91 -0.02 2.35 16 Total: -1.00 -67.88 369.36 -1.99 -69.88 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.54 Total: 24.47 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 5.62 Total: 5.47 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -8.17 Total: -103.22 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -2.02 Total: -38.84 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Total: -67.88 -1.99 -69.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.022 kcal (2) G-P(sol) polarization free energy of solvation -67.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds