Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39735 * 120.08453 * 67.55268 * 3 2 1 5 5 C 1.38044 * 120.13978 * 180.02562 * 4 3 2 6 6 C 1.38101 * 120.30382 * 0.02562 * 5 4 3 7 7 C 1.39642 * 120.16398 * 0.02562 * 6 5 4 8 8 C 1.47860 * 120.07072 * 179.97438 * 7 6 5 9 9 N 1.31238 * 126.37973 * 180.02562 * 8 7 6 10 10 N 1.28659 * 109.24990 * 179.74772 * 9 8 7 11 11 C 1.30383 * 109.52658 * 0.38520 * 10 9 8 12 12 C 1.50701 * 126.18815 * 179.88887 * 11 10 9 13 13 N 1.46900 * 109.47223 * 89.68626 * 12 11 10 14 14 C 1.47443 * 111.00227 * 69.87126 * 13 12 11 15 15 C 1.54312 * 107.23612 * 236.74273 * 14 13 12 16 16 C 1.55142 * 103.17714 * 337.62814 * 15 14 13 17 17 O 1.42900 * 110.99267 * 277.64922 * 16 15 14 18 18 C 1.50700 * 110.99048 * 153.83199 * 16 15 14 19 19 H 1.08004 * 119.99851 * 241.45911 * 18 16 15 20 20 C 1.37875 * 120.00057 * 61.45406 * 18 16 15 21 21 N 1.31517 * 120.00100 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00140 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47176 * 89.99921 * 22 20 18 24 24 H 1.48492 * 109.47176 * 210.00140 * 22 20 18 25 25 H 1.48502 * 109.47068 * 330.00624 * 22 20 18 26 26 C 1.47844 * 110.99982 * 309.02970 * 13 12 11 27 27 O 1.34408 * 107.62570 * 359.62015 * 11 10 9 28 28 C 1.39311 * 119.85360 * 0.22882 * 7 6 5 29 29 H 1.08003 * 119.93143 * 0.04043 * 4 3 2 30 30 H 1.07999 * 119.84573 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.92198 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.47013 * 329.68601 * 12 11 10 33 33 H 1.08994 * 109.47127 * 209.68428 * 12 11 10 34 34 H 1.08997 * 109.88254 * 117.33308 * 14 13 12 35 35 H 1.09001 * 110.02167 * 356.22840 * 14 13 12 36 36 H 1.09002 * 110.70596 * 96.10119 * 15 14 13 37 37 H 1.09005 * 110.70742 * 219.16269 * 15 14 13 38 38 H 0.96696 * 113.99925 * 298.54409 * 17 16 15 39 39 H 0.96993 * 120.00152 * 179.97438 * 21 20 18 40 40 H 1.08999 * 110.37744 * 265.19940 * 26 13 12 41 41 H 1.09008 * 110.37208 * 27.53592 * 26 13 12 42 42 H 1.08001 * 120.14783 * 179.74916 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 -0.4607 -1.1175 5 6 4.6491 -0.4611 -1.1185 6 6 5.3469 -0.0068 -0.0168 7 6 4.6595 0.4561 1.1072 8 6 5.4087 0.9415 2.2859 9 7 4.8922 1.4005 3.4016 10 7 5.8418 1.7263 4.2062 11 6 6.9925 1.4977 3.6374 12 6 8.3497 1.7463 4.2435 13 7 8.7899 0.5463 4.9675 14 6 9.1078 -0.5483 4.0322 15 6 8.2319 -1.7558 4.4268 16 6 7.8829 -1.4695 5.9111 17 8 8.9427 -1.8841 6.7754 18 6 6.5845 -2.1299 6.2975 19 1 5.7487 -1.5284 6.6233 20 6 6.4636 -3.5019 6.2350 21 7 7.4815 -4.2344 5.8387 22 14 4.8545 -4.3206 6.7146 23 1 3.9830 -4.4380 5.5180 24 1 5.1309 -5.6736 7.2604 25 1 4.1704 -3.5007 7.7466 26 6 7.7445 0.0781 5.9021 27 8 6.7495 0.9947 2.4149 28 6 3.2664 0.4545 1.1175 29 1 2.7291 -0.8176 -1.9824 30 1 5.1858 -0.8191 -1.9846 31 1 6.4269 -0.0102 -0.0241 32 1 8.2903 2.5866 4.9352 33 1 9.0641 1.9761 3.4530 34 1 10.1621 -0.8121 4.1149 35 1 8.8811 -0.2438 3.0105 36 1 7.3282 -1.7916 3.8184 37 1 8.7934 -2.6856 4.3355 38 1 9.1328 -2.8314 6.7382 39 1 7.3966 -5.1996 5.7951 40 1 7.9197 0.4802 6.9000 41 1 6.7569 0.3684 5.5432 42 1 2.7300 0.8076 1.9858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = 64.185282 kcal Electronic energy + Delta-G solvation = -29193.349807 eV Core-core repulsion = 25141.106313 eV Total energy + Delta-G solvation = -4052.243494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.08731 -39.84786 -38.65739 -36.76077 -36.09261 -35.13354 -33.13999 -32.18225 -31.83930 -31.13994 -29.14023 -28.25035 -26.36904 -24.79729 -24.50525 -23.98810 -22.27297 -22.08558 -20.23182 -19.67358 -19.43212 -17.58168 -16.99071 -16.89359 -16.68235 -16.02476 -15.57838 -15.41030 -14.92986 -14.80937 -14.56193 -14.38810 -14.24704 -13.80123 -13.49986 -13.21654 -13.12370 -12.91500 -12.75644 -12.36913 -12.24264 -12.19462 -11.87011 -11.79707 -11.64259 -11.35909 -11.30263 -11.06966 -10.85485 -10.83094 -10.48403 -10.45240 -10.31596 -9.98287 -9.47815 -9.28554 -8.81117 -8.64903 -8.19288 -8.08153 -6.25780 -4.33201 0.09577 0.49236 1.48815 2.09671 2.36550 2.39893 2.75615 3.20231 3.27569 3.33324 3.44439 3.48594 3.65472 4.21098 4.27315 4.39731 4.47164 4.51839 4.60830 4.78808 4.98107 5.03326 5.16048 5.26607 5.35892 5.44440 5.47362 5.53307 5.66744 5.73817 5.78512 5.82522 5.90261 5.91387 6.06717 6.19190 6.32671 6.51590 6.74424 6.90998 7.14718 7.23448 7.35738 7.36620 7.40768 7.76909 8.09745 8.34989 8.69921 9.35037 9.44702 10.81371 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009751 B = 0.004015 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.739490 B = 6971.920085 C = 8583.382622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.256 3.744 3 C -0.028 4.028 4 C -0.051 4.051 5 C -0.118 4.118 6 C -0.055 4.055 7 C -0.010 4.010 8 C 0.190 3.810 9 N -0.265 5.265 10 N -0.273 5.273 11 C 0.152 3.848 12 C 0.139 3.861 13 N -0.502 5.502 14 C 0.033 3.967 15 C -0.143 4.143 16 C 0.255 3.745 17 O -0.578 6.578 18 C -0.534 4.534 19 H 0.061 0.939 20 C 0.074 3.926 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.283 1.283 25 H -0.271 1.271 26 C 0.039 3.961 27 O -0.216 6.216 28 C -0.022 4.022 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.378 0.622 39 H 0.267 0.733 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 8.624 -15.737 17.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.059 4.059 3 C -0.031 4.031 4 C -0.072 4.072 5 C -0.136 4.136 6 C -0.076 4.076 7 C -0.012 4.012 8 C -0.018 4.018 9 N -0.113 5.113 10 N -0.121 5.121 11 C -0.059 4.059 12 C 0.007 3.993 13 N -0.225 5.225 14 C -0.094 4.094 15 C -0.182 4.182 16 C 0.214 3.786 17 O -0.386 6.386 18 C -0.573 4.573 19 H 0.079 0.921 20 C -0.128 4.128 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.087 4.087 27 O -0.094 6.094 28 C -0.044 4.044 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.139 0.861 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.227 0.773 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.820 9.591 -14.410 17.406 hybrid contribution -0.313 -1.825 -1.187 2.199 sum -2.134 7.766 -15.597 17.553 Atomic orbital electron populations 1.81280 1.11879 1.08211 1.07054 1.25478 0.92397 0.93972 0.94100 1.15737 0.84670 1.06416 0.96286 1.21392 0.94458 0.94817 0.96582 1.21032 0.93440 1.00280 0.98809 1.21550 1.01232 0.93458 0.91323 1.16969 0.91353 1.03303 0.89609 1.25147 0.78300 1.01344 0.97015 1.74664 1.24730 1.13311 0.98602 1.74444 0.95397 1.18563 1.23732 1.29801 1.01444 0.95156 0.79544 1.21649 0.82771 0.97701 0.97137 1.64072 1.38387 1.04808 1.15193 1.23032 1.01198 0.92123 0.93092 1.23245 0.97895 0.96734 1.00328 1.19585 0.86094 0.87650 0.85237 1.86141 1.56001 1.29864 1.66624 1.21509 0.98089 0.92087 1.45606 0.92082 1.24955 0.96907 0.97204 0.93765 1.69723 1.30527 1.06121 1.47126 0.86517 0.83385 0.78744 0.79016 1.20572 1.20898 1.19568 1.23510 0.92284 0.97137 0.95800 1.84843 1.25544 1.63824 1.35226 1.21188 0.92022 0.93888 0.97317 0.84198 0.83756 0.84096 0.86072 0.87922 0.90562 0.93960 0.93163 0.90040 0.77294 0.92358 0.90302 0.91284 0.83167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.34 18.54 41.84 0.78 -4.56 16 2 C 0.26 2.74 15.32 -22.47 -0.34 2.39 16 3 C -0.03 -0.25 5.73 -106.99 -0.61 -0.86 16 4 C -0.05 -0.33 9.75 -39.09 -0.38 -0.71 16 5 C -0.12 -0.72 10.02 -39.70 -0.40 -1.11 16 6 C -0.06 -0.47 9.72 -39.11 -0.38 -0.85 16 7 C -0.01 -0.12 5.87 -105.04 -0.62 -0.74 16 8 C 0.19 2.86 7.99 -13.87 -0.11 2.75 16 9 N -0.27 -4.65 11.91 32.07 0.38 -4.27 16 10 N -0.27 -4.97 10.65 32.58 0.35 -4.62 16 11 C 0.15 2.44 6.02 -12.89 -0.08 2.37 16 12 C 0.14 1.92 5.91 -4.98 -0.03 1.89 16 13 N -0.50 -8.97 5.41 -232.38 -1.26 -10.23 16 14 C 0.03 0.59 6.46 -2.84 -0.02 0.57 16 15 C -0.14 -3.19 5.36 -24.91 -0.13 -3.32 16 16 C 0.25 6.25 0.88 -89.38 -0.08 6.17 16 17 O -0.58 -14.83 13.16 -35.23 -0.46 -15.29 16 18 C -0.53 -14.52 8.28 -34.44 -0.29 -14.80 16 19 H 0.06 1.71 7.79 -52.48 -0.41 1.30 16 20 C 0.07 1.97 5.29 -17.82 -0.09 1.88 16 21 N -0.90 -23.66 10.75 55.43 0.60 -23.06 16 22 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.04 0.85 5.68 -2.04 -0.01 0.83 16 27 O -0.22 -3.27 10.10 4.03 0.04 -3.23 16 28 C -0.02 -0.23 9.40 -38.76 -0.36 -0.60 16 29 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 30 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 31 H 0.14 1.06 7.92 -52.49 -0.42 0.65 16 32 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.10 1.10 8.04 -51.93 -0.42 0.68 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.04 0.67 6.76 -51.93 -0.35 0.32 16 36 H 0.05 1.19 8.03 -51.93 -0.42 0.77 16 37 H 0.08 1.92 7.53 -51.93 -0.39 1.53 16 38 H 0.38 9.73 7.56 45.56 0.34 10.07 16 39 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 41 H 0.07 1.53 4.90 -51.92 -0.25 1.27 16 42 H 0.15 1.65 7.86 -52.49 -0.41 1.24 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -31.49 364.29 -7.02 -38.51 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -3.97 Total: 9.34 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -3.94 Total: -4.14 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.84 Total: -46.74 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.42 Total: -18.52 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.49 -7.02 -38.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.692 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds