Wall clock time and date at job start Sat Apr 11 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76200 * 99.99986 * 2 1 4 4 C 1.39278 * 120.44350 * 180.27461 * 3 2 1 5 5 C 1.39134 * 118.42988 * 180.28130 * 4 3 2 6 6 N 1.38638 * 120.43519 * 179.71627 * 5 4 3 7 7 C 1.46504 * 119.99822 * 359.72911 * 6 5 4 8 8 C 1.53036 * 109.45840 * 154.99463 * 7 6 5 9 9 C 1.53192 * 109.31350 * 181.38198 * 8 7 6 10 10 N 1.46927 * 108.77835 * 305.37116 * 9 8 7 11 11 C 1.36931 * 120.63063 * 233.58494 * 10 9 8 12 12 H 1.08000 * 120.00194 * 27.69394 * 11 10 9 13 13 C 1.38812 * 119.99661 * 207.69852 * 11 10 9 14 14 N 1.31617 * 120.00378 * 17.35460 * 13 11 10 15 15 Si 1.86807 * 119.99569 * 197.35510 * 13 11 10 16 16 H 1.48498 * 109.47223 * 60.00170 * 15 13 11 17 17 H 1.48507 * 109.46987 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47060 * 299.99503 * 15 13 11 19 19 C 1.46925 * 118.73378 * 53.60431 * 10 9 8 20 20 C 1.53038 * 109.45911 * 275.06940 * 7 6 5 21 21 N 1.33136 * 119.13453 * 359.44811 * 5 4 3 22 22 C 1.32506 * 120.81103 * 0.27393 * 21 5 4 23 23 S 1.76200 * 119.13795 * 179.97438 * 22 21 5 24 24 C 1.80998 * 99.99952 * 179.97438 * 23 22 21 25 25 N 1.32500 * 121.71966 * 0.02562 * 22 21 5 26 26 H 1.08998 * 109.46891 * 299.99836 * 1 2 3 27 27 H 1.08997 * 109.46932 * 60.00071 * 1 2 3 28 28 H 1.09001 * 109.47204 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.78626 * 0.03407 * 4 3 2 30 30 H 0.96995 * 120.00188 * 179.72460 * 6 5 4 31 31 H 1.09000 * 109.44452 * 35.03566 * 7 6 5 32 32 H 1.08996 * 109.50328 * 301.34224 * 8 7 6 33 33 H 1.09005 * 109.49381 * 61.43728 * 8 7 6 34 34 H 1.09009 * 109.58209 * 65.15896 * 9 8 7 35 35 H 1.09001 * 109.58664 * 185.57986 * 9 8 7 36 36 H 0.96999 * 120.00020 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.58490 * 186.60126 * 19 10 9 38 38 H 1.09002 * 109.70655 * 66.25118 * 19 10 9 39 39 H 1.09006 * 109.49625 * 298.56227 * 20 7 6 40 40 H 1.08996 * 109.50117 * 58.63222 * 20 7 6 41 41 H 1.09000 * 109.47378 * 300.00292 * 24 23 22 42 42 H 1.09004 * 109.47003 * 59.99730 * 24 23 22 43 43 H 1.09000 * 109.47370 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4210 2.2217 -0.0058 5 6 3.6144 3.5995 0.0005 6 7 4.8957 4.1289 0.0010 7 6 6.0572 3.2360 0.0010 8 6 7.2585 3.9622 -0.6083 9 6 8.4617 3.0143 -0.6384 10 7 8.6922 2.4995 0.7183 11 6 9.9236 2.6107 1.3068 12 1 10.5853 3.4169 1.0266 13 6 10.3214 1.6869 2.2635 14 7 9.6947 0.5341 2.3661 15 14 11.7466 2.0801 3.4055 16 1 11.4282 3.2980 4.1933 17 1 11.9706 0.9386 4.3287 18 1 12.9735 2.3163 2.6028 19 6 7.5764 1.8629 1.4313 20 6 6.3832 2.8236 1.4383 21 7 2.5528 4.4030 0.0005 22 6 1.3248 3.9052 0.0001 23 16 -0.0485 5.0092 0.0008 24 6 -1.4102 3.8169 -0.0009 25 7 1.1026 2.5990 0.0002 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 4.2631 1.5454 -0.0108 30 1 5.0232 5.0904 0.0014 31 1 5.8320 2.3478 -0.5894 32 1 7.0172 4.2762 -1.6238 33 1 7.4996 4.8369 -0.0042 34 1 8.2559 2.1842 -1.3142 35 1 9.3446 3.5553 -0.9789 36 1 9.9725 -0.1111 3.0349 37 1 7.8752 1.6439 2.4565 38 1 7.2977 0.9378 0.9265 39 1 6.6326 3.7090 2.0231 40 1 5.5187 2.3276 1.8795 41 1 -1.3448 3.1918 -0.8915 42 1 -1.3453 3.1900 0.8884 43 1 -2.3606 4.3507 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594550089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:01 Heat of formation + Delta-G solvation = 52.189793 kcal Electronic energy + Delta-G solvation = -24880.183211 eV Core-core repulsion = 21405.616376 eV Total energy + Delta-G solvation = -3474.566835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82959 -39.69947 -37.10007 -34.84443 -33.83284 -32.41203 -31.73640 -30.78276 -29.83936 -29.63525 -27.00934 -25.79451 -24.89638 -23.85389 -23.24168 -21.08606 -20.01501 -19.20436 -18.61634 -17.50294 -17.11389 -16.87511 -16.44432 -16.37875 -16.16249 -15.61779 -15.44427 -15.31142 -14.85935 -14.80529 -14.71901 -14.44233 -14.26873 -14.07650 -13.51414 -13.36078 -13.19836 -13.09297 -12.97270 -12.60361 -12.56390 -12.23437 -12.11745 -12.02409 -11.90761 -11.86309 -11.78442 -11.39562 -11.36507 -11.33433 -10.54927 -10.44478 -9.37838 -9.05338 -8.71868 -8.64027 -7.88468 -5.32995 -0.26344 0.13241 0.13782 0.35877 1.10135 1.34913 1.47165 1.49715 1.55918 1.92507 2.51087 2.56797 3.27545 3.50757 3.62564 3.65301 3.79559 3.97889 4.09870 4.19193 4.29307 4.29515 4.37993 4.39074 4.40469 4.43468 4.57930 4.62957 4.77342 4.88794 4.92842 4.99867 5.01614 5.02415 5.10439 5.29993 5.45267 5.53453 5.63719 5.70559 6.01078 6.38158 6.42805 6.92206 7.13901 7.84608 8.35462 9.18177 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.002690 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.040207 B =10405.028542 C =11341.403888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.054 6.054 3 C 0.189 3.811 4 C -0.293 4.293 5 C 0.459 3.541 6 N -0.689 5.689 7 C 0.169 3.831 8 C -0.124 4.124 9 C 0.144 3.856 10 N -0.610 5.610 11 C -0.263 4.263 12 H 0.069 0.931 13 C -0.049 4.049 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.280 1.280 17 H -0.296 1.296 18 H -0.274 1.274 19 C 0.182 3.818 20 C -0.136 4.136 21 N -0.587 5.587 22 C 0.335 3.665 23 S -0.006 6.006 24 C -0.133 4.133 25 N -0.568 5.568 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.144 0.856 30 H 0.412 0.588 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.250 0.750 37 H 0.055 0.945 38 H 0.003 0.997 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.380 4.021 -6.739 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.184 5.816 3 C -0.066 4.066 4 C -0.331 4.331 5 C 0.211 3.789 6 N -0.319 5.319 7 C 0.065 3.935 8 C -0.163 4.163 9 C 0.018 3.982 10 N -0.333 5.333 11 C -0.394 4.394 12 H 0.087 0.913 13 C -0.245 4.245 14 N -0.579 5.579 15 Si 0.792 3.208 16 H -0.206 1.206 17 H -0.222 1.222 18 H -0.200 1.200 19 C 0.056 3.944 20 C -0.176 4.176 21 N -0.317 5.317 22 C -0.045 4.045 23 S 0.227 5.773 24 C -0.302 4.302 25 N -0.297 5.297 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.145 0.855 29 H 0.162 0.838 30 H 0.249 0.751 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.021 0.979 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.330 4.536 -6.653 24.680 hybrid contribution 1.210 -0.663 0.858 1.625 sum -22.120 3.873 -5.795 23.192 Atomic orbital electron populations 1.23546 0.91316 1.07771 1.07025 1.86097 1.10743 0.94893 1.89885 1.23404 0.91223 1.00034 0.91967 1.21689 0.98198 0.95355 1.17843 1.18410 0.86309 0.88574 0.85631 1.44791 1.00537 1.09996 1.76607 1.20932 0.83744 0.92708 0.96161 1.22148 0.93858 0.98974 1.01345 1.21014 0.96205 0.94899 0.86057 1.44330 1.07296 1.69043 1.12633 1.19477 0.94168 1.06674 1.19040 0.91301 1.25766 1.00981 0.94590 1.03161 1.70161 1.44839 1.06682 1.36219 0.85397 0.79736 0.76730 0.78920 1.20646 1.22178 1.19978 1.20498 0.85279 0.91335 0.97293 1.22435 0.98379 1.00183 0.96613 1.68029 0.97872 1.39155 1.26679 1.25063 0.95354 0.92017 0.92116 1.85790 0.92995 1.08290 1.90266 1.23634 0.97834 1.01685 1.07052 1.69086 1.33000 1.01729 1.25839 0.89185 0.88959 0.85483 0.83803 0.75129 0.90381 0.89231 0.91394 0.96056 0.91708 0.94095 0.92675 0.97918 0.92847 0.92616 0.89095 0.89266 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.68 113.37 1.10 -0.68 16 2 S -0.05 -1.19 22.73 -56.49 -1.28 -2.47 16 3 C 0.19 5.22 7.00 84.74 0.59 5.81 16 4 C -0.29 -8.87 8.70 22.74 0.20 -8.67 16 5 C 0.46 14.09 7.68 132.97 1.02 15.12 16 6 N -0.69 -19.54 5.23 -324.18 -1.70 -21.24 16 7 C 0.17 5.24 2.12 45.02 0.10 5.34 16 8 C -0.12 -3.71 5.55 30.67 0.17 -3.54 16 9 C 0.14 5.52 6.52 86.36 0.56 6.08 16 10 N -0.61 -29.43 2.99 -699.08 -2.09 -31.52 16 11 C -0.26 -14.13 9.58 84.03 0.81 -13.32 16 12 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 13 C -0.05 -2.72 4.91 84.86 0.42 -2.30 16 14 N -0.93 -54.56 11.19 21.65 0.24 -54.32 16 15 Si 0.96 44.42 29.59 68.60 2.03 46.45 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 C 0.18 8.58 5.31 86.36 0.46 9.04 16 20 C -0.14 -5.04 5.62 30.67 0.17 -4.87 16 21 N -0.59 -18.20 10.43 -194.24 -2.03 -20.22 16 22 C 0.34 9.31 7.85 180.46 1.42 10.73 16 23 S -0.01 -0.12 22.89 -56.49 -1.29 -1.41 16 24 C -0.13 -1.62 9.61 113.37 1.09 -0.53 16 25 N -0.57 -14.82 7.98 -192.87 -1.54 -16.36 16 26 H 0.09 1.26 8.13 -2.40 -0.02 1.24 16 27 H 0.09 1.24 8.13 -2.40 -0.02 1.22 16 28 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.14 4.43 6.32 -2.91 -0.02 4.41 16 30 H 0.41 10.64 8.73 -92.71 -0.81 9.83 16 31 H 0.08 2.48 6.49 -2.39 -0.02 2.47 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.06 2.40 7.93 -2.39 -0.02 2.39 16 36 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 37 H 0.05 2.99 6.04 -2.38 -0.01 2.97 16 38 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.06 2.02 7.81 -2.39 -0.02 2.00 16 41 H 0.09 1.12 8.11 -2.39 -0.02 1.10 16 42 H 0.09 1.14 8.11 -2.39 -0.02 1.12 16 43 H 0.13 0.85 8.14 -2.40 -0.02 0.83 16 Total: -1.00 -65.09 373.47 0.66 -64.43 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.22 Total: 18.47 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 8.10 Total: 18.19 kcal Atomic # 7 Polarization: -136.55 SS G_CDS: -7.11 Total: -143.66 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.58 Total: -3.88 kcal Total: -65.09 0.66 -64.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594550089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.623 kcal (2) G-P(sol) polarization free energy of solvation -65.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds