Wall clock time and date at job start Sat Apr 11 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00007 * 2 1 4 4 H 1.48494 * 109.47389 * 240.00089 * 3 2 1 5 5 H 1.48505 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47050 * 120.00154 * 3 2 1 7 7 C 1.37877 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00479 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47550 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47356 * 180.02562 * 10 9 7 12 12 C 1.35308 * 125.87222 * 124.99877 * 11 10 9 13 13 C 1.35353 * 106.18215 * 179.97438 * 12 11 10 14 14 C 1.50697 * 126.75330 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.46727 * 95.00771 * 14 13 12 16 16 C 1.34417 * 118.42172 * 269.97403 * 15 14 13 17 17 O 1.21236 * 120.11521 * 359.97438 * 16 15 14 18 18 C 1.51329 * 119.76678 * 179.97438 * 16 15 14 19 19 C 1.51059 * 117.32973 * 0.02562 * 18 16 15 20 20 C 1.37397 * 121.53818 * 179.97438 * 19 18 16 21 21 C 1.38565 * 119.75022 * 180.02562 * 20 19 18 22 22 C 1.38395 * 120.26622 * 359.97438 * 21 20 19 23 23 C 1.38006 * 120.41386 * 359.97438 * 22 21 20 24 24 C 1.39498 * 119.65393 * 0.02562 * 23 22 21 25 25 C 1.34028 * 118.42561 * 89.99927 * 15 14 13 26 26 O 1.21499 * 118.90172 * 359.97438 * 25 15 14 27 27 N 1.33778 * 106.48876 * 0.26615 * 13 12 11 28 28 N 1.28626 * 108.88745 * 359.55815 * 27 13 12 29 29 H 0.97001 * 119.99909 * 359.97438 * 1 2 3 30 30 H 1.09009 * 109.46864 * 60.00326 * 9 7 2 31 31 H 1.09003 * 109.47104 * 300.00415 * 9 7 2 32 32 H 1.08996 * 109.47058 * 59.99914 * 10 9 7 33 33 H 1.09003 * 109.47067 * 300.00205 * 10 9 7 34 34 H 1.08004 * 126.91326 * 0.02562 * 12 11 10 35 35 H 1.08995 * 109.47386 * 335.00438 * 14 13 12 36 36 H 1.09001 * 109.46983 * 215.00081 * 14 13 12 37 37 H 1.08996 * 107.87955 * 238.03177 * 18 16 15 38 38 H 1.09000 * 107.87552 * 122.00352 * 18 16 15 39 39 H 1.07999 * 120.11977 * 359.97438 * 20 19 18 40 40 H 1.08004 * 119.87055 * 179.97438 * 21 20 19 41 41 H 1.07996 * 119.79398 * 179.72203 * 22 21 20 42 42 H 1.07999 * 120.17367 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 1.6613 -5.9316 -0.8996 13 6 0.7979 -6.9049 -0.5262 14 6 0.5838 -8.2310 -1.2092 15 7 1.4077 -9.2534 -0.5596 16 6 2.6531 -9.4597 -1.0211 17 8 3.0719 -8.8082 -1.9539 18 6 3.5308 -10.5079 -0.3722 19 6 2.9455 -11.2831 0.7846 20 6 3.6658 -12.2548 1.4364 21 6 3.0921 -12.9436 2.4930 22 6 1.7988 -12.6560 2.8930 23 6 1.0677 -11.6811 2.2454 24 6 1.6384 -10.9833 1.1808 25 6 0.8832 -9.9385 0.4660 26 8 -0.2519 -9.6886 0.8199 27 7 0.1674 -6.4551 0.5646 28 7 0.6177 -5.2853 0.8532 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8897 32 1 2.8719 -3.6044 0.8894 33 1 2.8720 -3.6044 -0.8905 34 1 2.3341 -5.9506 -1.7442 35 1 0.8667 -8.1491 -2.2586 36 1 -0.4671 -8.5114 -1.1370 37 1 4.4367 -10.0146 -0.0202 38 1 3.8216 -11.2235 -1.1413 39 1 4.6751 -12.4813 1.1258 40 1 3.6564 -13.7081 3.0064 41 1 1.3576 -13.2007 3.7146 42 1 0.0586 -11.4601 2.5605 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594650115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:07 Heat of formation + Delta-G solvation = 58.120595 kcal Electronic energy + Delta-G solvation = -28211.519668 eV Core-core repulsion = 24159.013190 eV Total energy + Delta-G solvation = -4052.506479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.85600 -41.83723 -39.47619 -38.79093 -35.65464 -35.00690 -33.81838 -32.83226 -31.87850 -31.07782 -29.95257 -28.60514 -27.13858 -25.52909 -24.37499 -23.43976 -22.43018 -22.33130 -21.48497 -20.26024 -18.93150 -18.51444 -17.46048 -17.18127 -16.77441 -16.16317 -15.90778 -15.70240 -15.46148 -15.05679 -14.75487 -14.58523 -14.51905 -14.36505 -14.31476 -14.09541 -13.61435 -13.47099 -13.12002 -12.54332 -12.41793 -12.37924 -12.26288 -11.68164 -11.57127 -11.24581 -11.11421 -10.89560 -10.74998 -10.54639 -10.44958 -10.28076 -10.04862 -9.94577 -9.48995 -9.44714 -9.31496 -9.30013 -8.89070 -8.51800 -6.15883 -4.22939 0.23957 0.81343 1.53773 1.91362 2.29908 2.66470 2.98204 3.04796 3.24948 3.30428 3.31898 3.33290 3.41389 3.89727 4.22251 4.33212 4.34523 4.56827 4.59355 4.76580 4.80180 4.87975 4.96564 4.99889 5.20053 5.20265 5.22387 5.29274 5.36656 5.46127 5.54690 5.70722 5.77878 5.83057 5.86127 5.93025 6.18139 6.32186 6.32659 6.45758 6.78133 7.03333 7.19961 7.40819 7.50491 7.57731 7.78821 8.10682 8.81921 9.00945 9.42439 10.95085 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.002214 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.792651 B =12646.122072 C =12819.876194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.016 3.984 10 C 0.111 3.889 11 N -0.271 5.271 12 C -0.030 4.030 13 C -0.067 4.067 14 C 0.188 3.812 15 N -0.558 5.558 16 C 0.536 3.464 17 O -0.490 6.490 18 C -0.115 4.115 19 C -0.044 4.044 20 C -0.122 4.122 21 C -0.082 4.082 22 C -0.131 4.131 23 C -0.044 4.044 24 C -0.140 4.140 25 C 0.562 3.438 26 O -0.471 6.471 27 N -0.261 5.261 28 N -0.073 5.073 29 H 0.265 0.735 30 H 0.024 0.976 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.187 0.813 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.958 -29.429 0.158 30.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.022 4.022 10 C -0.008 4.008 11 N -0.063 5.063 12 C -0.184 4.184 13 C -0.207 4.207 14 C 0.066 3.934 15 N -0.300 5.300 16 C 0.325 3.675 17 O -0.362 6.362 18 C -0.154 4.154 19 C -0.044 4.044 20 C -0.140 4.140 21 C -0.100 4.100 22 C -0.149 4.149 23 C -0.062 4.062 24 C -0.143 4.143 25 C 0.352 3.648 26 O -0.343 6.343 27 N -0.127 5.127 28 N -0.053 5.053 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.204 0.796 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.642 -28.369 1.121 29.402 hybrid contribution 1.225 0.882 -0.964 1.791 sum 8.868 -27.488 0.156 28.883 Atomic orbital electron populations 1.69969 1.06160 1.27276 1.48920 1.25006 0.94897 0.99498 0.94674 0.86526 0.79482 0.82515 0.78723 1.20069 1.21101 1.20025 1.20892 0.92986 0.90087 1.53208 0.92170 1.19400 0.93804 0.89698 0.99315 1.22766 0.95841 0.78534 1.03624 1.47995 1.25882 1.15291 1.17160 1.23456 1.05128 0.89845 0.99975 1.21758 1.01110 0.98588 0.99226 1.19764 0.97040 0.80905 0.95722 1.46613 1.15728 1.35589 1.32058 1.20629 0.80978 0.83178 0.82700 1.90774 1.72017 1.46778 1.26660 1.20805 0.99689 0.97433 0.97498 1.19754 0.93181 0.95860 0.95643 1.20721 1.00341 0.96215 0.96713 1.21457 0.95056 0.98116 0.95394 1.21224 0.94755 0.98280 1.00653 1.21320 1.00402 0.92534 0.91979 1.19627 0.94833 0.99754 1.00102 1.18188 0.86729 0.80842 0.79000 1.90857 1.17644 1.63835 1.61917 1.75128 1.21332 1.03224 1.13005 1.78371 1.03536 1.08449 1.14920 0.92507 0.95765 0.94400 0.89213 0.88706 0.79627 0.86971 0.86873 0.85727 0.85661 0.84678 0.84983 0.84852 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.40 5.10 -27.88 -0.14 0.25 16 10 C 0.11 2.20 6.39 -4.04 -0.03 2.18 16 11 N -0.27 -5.39 3.44 -61.27 -0.21 -5.60 16 12 C -0.03 -0.51 11.50 -17.05 -0.20 -0.71 16 13 C -0.07 -1.16 6.81 -82.77 -0.56 -1.72 16 14 C 0.19 2.55 5.51 -5.20 -0.03 2.52 16 15 N -0.56 -6.93 2.52 -117.90 -0.30 -7.23 16 16 C 0.54 5.76 7.75 -10.84 -0.08 5.67 16 17 O -0.49 -6.26 16.53 5.60 0.09 -6.17 16 18 C -0.12 -0.78 5.77 -28.55 -0.16 -0.94 16 19 C -0.04 -0.33 5.91 -104.16 -0.62 -0.94 16 20 C -0.12 -0.65 9.80 -39.77 -0.39 -1.04 16 21 C -0.08 -0.41 10.05 -39.40 -0.40 -0.81 16 22 C -0.13 -0.80 10.02 -39.61 -0.40 -1.20 16 23 C -0.04 -0.38 9.61 -39.20 -0.38 -0.76 16 24 C -0.14 -1.41 5.87 -105.10 -0.62 -2.02 16 25 C 0.56 7.29 7.57 -12.86 -0.10 7.19 16 26 O -0.47 -7.52 15.60 5.37 0.08 -7.44 16 27 N -0.26 -5.47 12.41 33.29 0.41 -5.06 16 28 N -0.07 -1.62 12.91 60.35 0.78 -0.84 16 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.02 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.04 1.06 8.12 -51.93 -0.42 0.64 16 32 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 33 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 34 H 0.19 2.55 8.06 -52.48 -0.42 2.12 16 35 H 0.11 1.28 7.30 -51.93 -0.38 0.90 16 36 H 0.11 1.54 7.24 -51.93 -0.38 1.16 16 37 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 40 H 0.13 0.32 8.06 -52.48 -0.42 -0.10 16 41 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.14 1.26 7.67 -52.49 -0.40 0.86 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -35.51 369.01 -7.29 -42.80 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.92 Total: -1.07 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -4.51 Total: -5.34 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 1.42 Total: -44.30 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.18 Total: -13.61 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.51 -7.29 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.916 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds