Wall clock time and date at job start Sat Apr 11 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00007 * 2 1 4 4 H 1.48494 * 109.47389 * 240.00089 * 3 2 1 5 5 H 1.48505 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47050 * 120.00154 * 3 2 1 7 7 C 1.37877 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00479 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47550 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47356 * 180.02562 * 10 9 7 12 12 C 1.35308 * 125.87222 * 124.99877 * 11 10 9 13 13 C 1.35353 * 106.18215 * 179.97438 * 12 11 10 14 14 C 1.50697 * 126.75330 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.46727 * 95.00771 * 14 13 12 16 16 C 1.34417 * 118.42172 * 269.97403 * 15 14 13 17 17 O 1.21236 * 120.11521 * 359.97438 * 16 15 14 18 18 C 1.51329 * 119.76678 * 179.97438 * 16 15 14 19 19 C 1.51059 * 117.32973 * 0.02562 * 18 16 15 20 20 C 1.37397 * 121.53818 * 179.97438 * 19 18 16 21 21 C 1.38565 * 119.75022 * 180.02562 * 20 19 18 22 22 C 1.38395 * 120.26622 * 359.97438 * 21 20 19 23 23 C 1.38006 * 120.41386 * 359.97438 * 22 21 20 24 24 C 1.39498 * 119.65393 * 0.02562 * 23 22 21 25 25 C 1.34028 * 118.42561 * 89.99927 * 15 14 13 26 26 O 1.21499 * 118.90172 * 359.97438 * 25 15 14 27 27 N 1.33778 * 106.48876 * 0.26615 * 13 12 11 28 28 N 1.28626 * 108.88745 * 359.55815 * 27 13 12 29 29 H 0.97001 * 119.99909 * 359.97438 * 1 2 3 30 30 H 1.09009 * 109.46864 * 60.00326 * 9 7 2 31 31 H 1.09003 * 109.47104 * 300.00415 * 9 7 2 32 32 H 1.08996 * 109.47058 * 59.99914 * 10 9 7 33 33 H 1.09003 * 109.47067 * 300.00205 * 10 9 7 34 34 H 1.08004 * 126.91326 * 0.02562 * 12 11 10 35 35 H 1.08995 * 109.47386 * 335.00438 * 14 13 12 36 36 H 1.09001 * 109.46983 * 215.00081 * 14 13 12 37 37 H 1.08996 * 107.87955 * 238.03177 * 18 16 15 38 38 H 1.09000 * 107.87552 * 122.00352 * 18 16 15 39 39 H 1.07999 * 120.11977 * 359.97438 * 20 19 18 40 40 H 1.08004 * 119.87055 * 179.97438 * 21 20 19 41 41 H 1.07996 * 119.79398 * 179.72203 * 22 21 20 42 42 H 1.07999 * 120.17367 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 1.6613 -5.9316 -0.8996 13 6 0.7979 -6.9049 -0.5262 14 6 0.5838 -8.2310 -1.2092 15 7 1.4077 -9.2534 -0.5596 16 6 2.6531 -9.4597 -1.0211 17 8 3.0719 -8.8082 -1.9539 18 6 3.5308 -10.5079 -0.3722 19 6 2.9455 -11.2831 0.7846 20 6 3.6658 -12.2548 1.4364 21 6 3.0921 -12.9436 2.4930 22 6 1.7988 -12.6560 2.8930 23 6 1.0677 -11.6811 2.2454 24 6 1.6384 -10.9833 1.1808 25 6 0.8832 -9.9385 0.4660 26 8 -0.2519 -9.6886 0.8199 27 7 0.1674 -6.4551 0.5646 28 7 0.6177 -5.2853 0.8532 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8897 32 1 2.8719 -3.6044 0.8894 33 1 2.8720 -3.6044 -0.8905 34 1 2.3341 -5.9506 -1.7442 35 1 0.8667 -8.1491 -2.2586 36 1 -0.4671 -8.5114 -1.1370 37 1 4.4367 -10.0146 -0.0202 38 1 3.8216 -11.2235 -1.1413 39 1 4.6751 -12.4813 1.1258 40 1 3.6564 -13.7081 3.0064 41 1 1.3576 -13.2007 3.7146 42 1 0.0586 -11.4601 2.5605 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594650115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:06 Heat of formation + Delta-G solvation = 34.885953 kcal Electronic energy + Delta-G solvation = -28212.527198 eV Core-core repulsion = 24159.013190 eV Total energy + Delta-G solvation = -4053.514008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.34265 -42.71266 -40.19519 -39.59587 -36.97237 -36.37604 -34.92818 -34.39446 -32.72757 -32.05886 -31.78599 -29.23454 -28.25451 -27.39859 -25.20214 -24.45752 -24.01645 -22.99417 -22.81501 -21.78679 -19.69394 -19.29494 -18.95845 -18.32104 -18.07993 -17.35505 -17.31157 -16.72506 -16.48373 -16.18539 -15.91124 -15.72562 -15.52262 -15.33691 -15.25878 -14.94748 -14.88244 -14.39683 -14.18863 -13.97074 -13.78579 -13.43481 -12.98048 -12.91864 -12.87417 -12.74641 -12.63747 -12.34517 -12.06059 -12.02876 -11.76988 -11.60457 -11.49865 -11.39745 -11.01297 -10.96955 -10.64672 -10.33218 -10.02405 -9.79967 -8.28293 -6.43351 -0.40215 0.33643 0.58031 0.76219 1.06257 1.39118 1.44307 1.48637 1.53172 1.78341 1.88524 2.37851 2.73100 2.76594 3.06754 3.25928 3.33035 3.57293 3.63782 3.85602 3.90148 3.98033 4.16790 4.19572 4.22031 4.35197 4.36240 4.38056 4.46551 4.49178 4.50019 4.57571 4.81926 4.83729 5.00255 5.00998 5.25106 5.25607 5.36810 5.40121 5.47041 5.52090 5.72622 5.86629 5.91912 6.01134 6.33889 6.66957 6.72544 7.27958 7.47654 8.84171 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.002214 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.792651 B =12646.122072 C =12819.876194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.259 1.259 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.024 3.976 10 C 0.124 3.876 11 N -0.278 5.278 12 C -0.016 4.016 13 C -0.066 4.066 14 C 0.188 3.812 15 N -0.562 5.562 16 C 0.531 3.469 17 O -0.511 6.511 18 C -0.109 4.109 19 C -0.043 4.043 20 C -0.114 4.114 21 C -0.071 4.071 22 C -0.133 4.133 23 C -0.064 4.064 24 C -0.172 4.172 25 C 0.558 3.442 26 O -0.520 6.520 27 N -0.288 5.288 28 N -0.123 5.123 29 H 0.265 0.735 30 H -0.008 1.008 31 H -0.005 1.005 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.225 0.775 35 H 0.136 0.864 36 H 0.104 0.896 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.154 0.846 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.482 -31.431 -0.452 34.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.100 0.900 9 C -0.014 4.014 10 C 0.005 3.995 11 N -0.070 5.070 12 C -0.170 4.170 13 C -0.207 4.207 14 C 0.065 3.935 15 N -0.303 5.303 16 C 0.323 3.677 17 O -0.385 6.385 18 C -0.147 4.147 19 C -0.043 4.043 20 C -0.132 4.132 21 C -0.088 4.088 22 C -0.151 4.151 23 C -0.083 4.083 24 C -0.175 4.175 25 C 0.351 3.649 26 O -0.395 6.395 27 N -0.154 5.154 28 N -0.102 5.102 29 H 0.074 0.926 30 H 0.010 0.990 31 H 0.014 0.986 32 H 0.120 0.880 33 H 0.149 0.851 34 H 0.241 0.759 35 H 0.154 0.846 36 H 0.122 0.878 37 H 0.165 0.835 38 H 0.177 0.823 39 H 0.191 0.809 40 H 0.185 0.815 41 H 0.171 0.829 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.199 -30.401 0.520 32.761 hybrid contribution -0.187 1.341 -0.774 1.560 sum 12.012 -29.059 -0.254 31.445 Atomic orbital electron populations 1.70143 1.08307 1.28238 1.50613 1.26090 0.95701 1.03962 0.94191 0.85327 0.78015 0.77097 0.79568 1.18367 1.21446 1.18841 1.21409 0.94157 0.90617 1.52041 0.90002 1.19144 0.94186 0.92304 0.95765 1.22565 0.94268 0.76639 1.05989 1.47978 1.25736 1.15737 1.17575 1.24048 1.04809 0.88439 0.99703 1.22363 1.00212 0.99997 0.98080 1.19798 0.97282 0.79782 0.96601 1.46736 1.16485 1.35071 1.32055 1.21419 0.80319 0.83572 0.82351 1.90755 1.72165 1.47909 1.27649 1.20885 0.98808 0.96996 0.98057 1.19912 0.92034 0.96436 0.95945 1.21156 1.01551 0.94612 0.95834 1.21938 0.94308 0.97874 0.94711 1.21503 0.95418 0.97398 1.00802 1.21360 1.00293 0.93941 0.92682 1.19586 0.96314 1.00270 1.01311 1.18835 0.86447 0.80972 0.78631 1.90822 1.19745 1.65556 1.63385 1.75085 1.22266 1.03224 1.14811 1.78358 1.05503 1.09477 1.16871 0.92617 0.98957 0.98620 0.88010 0.85076 0.75879 0.84592 0.87824 0.83492 0.82263 0.80946 0.81457 0.82862 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.98 42.86 29.54 68.60 2.03 44.89 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.54 -29.30 9.11 25.60 0.23 -29.07 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.02 1.26 5.10 29.85 0.15 1.41 16 10 C 0.12 4.85 6.39 86.38 0.55 5.40 16 11 N -0.28 -11.16 3.44 -347.74 -1.20 -12.36 16 12 C -0.02 -0.54 11.50 83.49 0.96 0.42 16 13 C -0.07 -2.33 6.81 41.60 0.28 -2.04 16 14 C 0.19 5.22 5.51 85.63 0.47 5.69 16 15 N -0.56 -14.05 2.52 -764.25 -1.92 -15.97 16 16 C 0.53 10.53 7.75 87.91 0.68 11.21 16 17 O -0.51 -11.93 16.53 -2.89 -0.05 -11.98 16 18 C -0.11 -1.10 5.77 29.42 0.17 -0.93 16 19 C -0.04 -0.52 5.91 -19.56 -0.12 -0.63 16 20 C -0.11 -0.69 9.80 22.15 0.22 -0.47 16 21 C -0.07 -0.41 10.05 22.39 0.23 -0.19 16 22 C -0.13 -1.38 10.02 22.25 0.22 -1.16 16 23 C -0.06 -1.15 9.61 22.52 0.22 -0.93 16 24 C -0.17 -3.44 5.87 -20.17 -0.12 -3.56 16 25 C 0.56 15.25 7.57 86.77 0.66 15.91 16 26 O -0.52 -18.23 15.60 -3.71 -0.06 -18.28 16 27 N -0.29 -12.75 12.41 -48.60 -0.60 -13.35 16 28 N -0.12 -5.75 12.91 37.02 0.48 -5.27 16 29 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 30 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 31 H 0.00 -0.28 8.12 -2.39 -0.02 -0.30 16 32 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.13 4.16 8.07 -2.39 -0.02 4.14 16 34 H 0.22 5.48 8.06 -2.91 -0.02 5.46 16 35 H 0.14 3.03 7.30 -2.39 -0.02 3.01 16 36 H 0.10 3.04 7.24 -2.39 -0.02 3.02 16 37 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.16 0.58 8.14 -2.39 -0.02 0.57 16 39 H 0.17 -0.21 8.06 -2.91 -0.02 -0.23 16 40 H 0.17 -0.15 8.06 -2.91 -0.02 -0.18 16 41 H 0.15 0.88 8.06 -2.91 -0.02 0.85 16 42 H 0.12 2.53 7.67 -2.91 -0.02 2.51 16 Total: -1.00 -83.94 369.01 5.29 -78.65 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.06 Total: 9.24 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 5.27 Total: 1.47 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -2.96 Total: -103.98 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.11 Total: -30.27 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -83.94 5.29 -78.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.539 kcal (2) G-P(sol) polarization free energy of solvation -83.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds