Wall clock time and date at job start Sat Apr 11 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00211 * 2 1 4 4 H 1.48500 * 109.47372 * 270.00013 * 3 2 1 5 5 H 1.48503 * 109.46981 * 29.99858 * 3 2 1 6 6 H 1.48496 * 109.47171 * 149.99579 * 3 2 1 7 7 C 1.37873 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99875 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00441 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47546 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00498 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47332 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47226 * 65.00128 * 12 11 10 14 14 C 1.47159 * 110.99995 * 189.99856 * 13 12 11 15 15 C 1.52899 * 108.49724 * 165.26825 * 14 13 12 16 16 C 1.50715 * 109.87045 * 50.45007 * 15 14 13 17 17 C 1.37739 * 121.75833 * 343.05967 * 16 15 14 18 18 C 1.38685 * 119.76369 * 180.28908 * 17 16 15 19 19 C 1.38058 * 120.37701 * 359.97438 * 18 17 16 20 20 C 1.38226 * 119.87074 * 359.97438 * 19 18 17 21 21 C 1.38076 * 119.82281 * 0.06765 * 20 19 18 22 22 S 1.76205 * 119.82608 * 179.97438 * 21 20 19 23 23 N 1.65597 * 107.21933 * 114.99633 * 22 21 20 24 24 O 1.42102 * 106.40263 * 228.54024 * 22 21 20 25 25 O 1.42100 * 106.39779 * 1.45544 * 22 21 20 26 26 C 1.46638 * 111.00057 * 67.01193 * 13 12 11 27 27 H 0.97000 * 119.99720 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47316 * 59.99545 * 9 7 2 29 29 H 1.09000 * 109.47016 * 299.99861 * 9 7 2 30 30 H 1.09001 * 109.46979 * 59.99992 * 11 10 9 31 31 H 1.09000 * 109.46881 * 300.00458 * 11 10 9 32 32 H 1.09003 * 109.46787 * 304.99640 * 12 11 10 33 33 H 1.09004 * 109.46612 * 185.00120 * 12 11 10 34 34 H 1.09001 * 109.63290 * 45.57108 * 14 13 12 35 35 H 1.08996 * 109.79951 * 285.06957 * 14 13 12 36 36 H 1.09002 * 109.39319 * 170.54983 * 15 14 13 37 37 H 1.09000 * 109.39180 * 290.35791 * 15 14 13 38 38 H 1.08000 * 119.81461 * 180.02562 * 18 17 16 39 39 H 1.08001 * 120.06888 * 179.97438 * 19 18 17 40 40 H 1.07996 * 120.09264 * 180.02562 * 20 19 18 41 41 H 0.97002 * 120.00194 * 0.02562 * 23 22 21 42 42 H 0.97002 * 119.99704 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.27147 * 296.17607 * 26 13 12 44 44 H 1.09001 * 109.26817 * 55.68503 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9879 -2.5413 -0.0001 11 6 5.4125 -2.6542 -0.0001 12 6 5.8070 -4.1324 -0.0009 13 7 5.3677 -4.7558 -1.2564 14 6 5.5142 -6.2189 -1.1982 15 6 4.7175 -6.8324 -2.3501 16 6 5.0800 -6.1501 -3.6442 17 6 5.7238 -4.9326 -3.6663 18 6 6.0324 -4.3390 -4.8811 19 6 5.6986 -4.9617 -6.0672 20 6 5.0536 -6.1841 -6.0453 21 6 4.7448 -6.7759 -4.8366 22 16 3.9219 -8.3338 -4.8085 23 7 4.9672 -9.4283 -4.1365 24 8 2.8402 -8.1998 -3.8968 25 8 3.7516 -8.7220 -6.1648 26 6 6.1114 -4.2163 -2.3993 27 1 -0.4850 0.8401 -0.0004 28 1 3.8746 -0.6807 0.8905 29 1 3.8752 -0.6796 -0.8895 30 1 5.8153 -2.1707 0.8899 31 1 5.8152 -2.1705 -0.8901 32 1 5.3311 -4.6358 0.8407 33 1 6.8898 -4.2195 0.0887 34 1 5.1278 -6.5882 -0.2483 35 1 6.5657 -6.4889 -1.2956 36 1 4.9484 -7.8951 -2.4242 37 1 3.6516 -6.7059 -2.1606 38 1 6.5375 -3.3846 -4.8994 39 1 5.9410 -4.4948 -7.0104 40 1 4.7911 -6.6745 -6.9709 41 1 5.8483 -9.1434 -3.8477 42 1 4.6981 -10.3543 -4.0311 43 1 5.8895 -3.1544 -2.5040 44 1 7.1799 -4.3452 -2.2263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603027390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:11 Heat of formation + Delta-G solvation = -80.157975 kcal Electronic energy + Delta-G solvation = -27764.554654 eV Core-core repulsion = 23809.203167 eV Total energy + Delta-G solvation = -3955.351487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.46740 -37.91150 -37.34646 -36.39840 -35.98094 -33.93101 -33.13837 -32.63971 -32.12261 -29.97203 -28.88600 -27.34597 -25.14511 -23.58128 -23.29163 -21.82468 -21.43844 -19.91405 -19.53894 -18.29489 -17.68593 -16.86499 -16.75211 -16.44527 -15.95861 -15.78409 -15.58646 -15.36938 -15.05770 -14.55645 -14.35289 -14.09286 -14.01493 -13.57140 -13.25575 -12.80677 -12.62232 -12.58241 -12.49088 -12.36586 -12.21512 -12.20700 -12.03127 -11.84775 -11.64530 -11.47478 -10.94678 -10.90911 -10.81324 -10.74682 -10.67566 -10.36379 -9.83698 -9.53351 -9.13017 -8.88173 -8.80515 -8.43070 -8.26629 -6.06933 -4.05416 0.17487 0.56553 1.05693 2.84480 3.17047 3.25764 3.32482 3.33531 3.48464 3.75398 4.23042 4.34719 4.38110 4.49852 4.58698 4.71691 4.78770 5.01745 5.03675 5.07527 5.18108 5.23303 5.23884 5.37175 5.42996 5.46242 5.50421 5.58902 5.65766 5.74847 5.75285 5.85087 5.88912 6.02235 6.07314 6.10667 6.23618 6.56641 6.61425 6.67238 6.99196 7.01993 7.06295 7.64144 8.08026 8.72255 9.07040 9.52378 11.06303 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.002885 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.844779 B = 9703.965972 C = 9979.821287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.363 6.363 11 C 0.061 3.939 12 C 0.061 3.939 13 N -0.518 5.518 14 C 0.056 3.944 15 C -0.114 4.114 16 C 0.036 3.964 17 C -0.091 4.091 18 C -0.054 4.054 19 C -0.144 4.144 20 C -0.019 4.019 21 C -0.678 4.678 22 S 2.701 3.299 23 N -1.252 6.252 24 O -0.952 6.952 25 O -0.969 6.969 26 C 0.091 3.909 27 H 0.266 0.734 28 H 0.000 1.000 29 H -0.005 1.005 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.144 0.856 41 H 0.415 0.585 42 H 0.420 0.580 43 H 0.096 0.904 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.740 -17.007 -9.184 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.102 0.898 9 C 0.093 3.907 10 O -0.282 6.282 11 C -0.017 4.017 12 C -0.066 4.066 13 N -0.242 5.242 14 C -0.072 4.072 15 C -0.151 4.151 16 C 0.034 3.966 17 C -0.092 4.092 18 C -0.072 4.072 19 C -0.163 4.163 20 C -0.039 4.039 21 C -0.766 4.766 22 S 2.790 3.210 23 N -0.927 5.927 24 O -0.941 6.941 25 O -0.959 6.959 26 C -0.037 4.037 27 H 0.076 0.924 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.243 0.757 42 H 0.250 0.750 43 H 0.114 0.886 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.934 -16.975 -9.618 26.500 hybrid contribution 2.229 1.441 0.251 2.667 sum 20.163 -15.534 -9.367 27.122 Atomic orbital electron populations 1.69881 1.06033 1.26962 1.50531 1.24771 0.94782 0.98652 0.94813 0.86866 0.80314 0.83949 0.78660 1.20037 1.20828 1.19204 1.20901 0.88291 0.95338 1.50781 0.89849 1.20576 0.96259 0.79852 0.93972 1.88030 1.16551 1.28761 1.94842 1.22337 0.86020 0.94458 0.98925 1.22195 0.97068 0.95461 0.91908 1.62133 1.55821 1.03698 1.02542 1.22104 0.97710 0.88303 0.99065 1.21191 1.04679 0.98068 0.91209 1.19256 0.90988 0.93405 0.92958 1.19669 0.99826 0.94595 0.95134 1.21420 0.95243 0.98742 0.91826 1.21181 1.00779 0.95861 0.98484 1.20911 0.92064 0.94597 0.96282 1.30401 1.22520 1.24528 0.99187 1.01594 0.72838 0.72944 0.73574 1.53165 1.31764 1.24511 1.83216 1.93661 1.50410 1.85680 1.64340 1.93573 1.84661 1.81814 1.35819 1.21050 0.95060 0.99842 0.87735 0.92429 0.98254 0.98727 0.93962 0.94592 0.89364 0.93934 0.89297 0.94501 0.90129 0.86014 0.85035 0.84835 0.83829 0.75745 0.74972 0.88561 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -15.63 9.99 -34.44 -0.34 -15.98 16 8 H 0.08 2.79 8.06 -52.48 -0.42 2.37 16 9 C 0.17 4.33 4.76 36.00 0.17 4.50 16 10 O -0.36 -8.47 10.27 -35.23 -0.36 -8.83 16 11 C 0.06 1.02 6.01 37.16 0.22 1.24 16 12 C 0.06 0.81 5.33 -3.83 -0.02 0.79 16 13 N -0.52 -7.20 4.63 -236.19 -1.09 -8.30 16 14 C 0.06 0.61 5.57 -3.73 -0.02 0.59 16 15 C -0.11 -1.30 4.48 -27.93 -0.13 -1.43 16 16 C 0.04 0.43 5.77 -104.60 -0.60 -0.17 16 17 C -0.09 -1.11 5.79 -104.68 -0.61 -1.72 16 18 C -0.05 -0.56 9.65 -39.48 -0.38 -0.94 16 19 C -0.14 -1.39 10.05 -39.65 -0.40 -1.79 16 20 C -0.02 -0.20 9.54 -39.65 -0.38 -0.58 16 21 C -0.68 -7.63 5.88 -39.44 -0.23 -7.86 16 22 S 2.70 28.42 5.50 -107.50 -0.59 27.83 16 23 N -1.25 -7.18 8.36 60.35 0.50 -6.68 16 24 O -0.95 -13.52 16.14 -57.17 -0.92 -14.44 16 25 O -0.97 -12.54 16.95 -57.17 -0.97 -13.51 16 26 C 0.09 1.11 4.92 -5.16 -0.03 1.08 16 27 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 28 H 0.00 0.00 7.20 -51.93 -0.37 -0.38 16 29 H 0.00 -0.12 7.57 -51.93 -0.39 -0.52 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.57 6.44 -51.93 -0.33 0.23 16 32 H 0.09 1.17 7.89 -51.93 -0.41 0.76 16 33 H 0.04 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 35 H 0.04 0.32 8.05 -51.93 -0.42 -0.10 16 36 H 0.08 0.65 5.60 -51.93 -0.29 0.36 16 37 H 0.12 1.73 7.49 -51.93 -0.39 1.34 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.14 1.30 7.32 -52.49 -0.38 0.92 16 41 H 0.42 1.47 8.38 -34.47 -0.29 1.18 16 42 H 0.42 1.60 8.96 -34.46 -0.31 1.29 16 43 H 0.10 1.27 6.55 -51.93 -0.34 0.93 16 44 H 0.05 0.46 8.07 -51.93 -0.42 0.04 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -39.23 363.28 -10.72 -49.95 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.03 Total: -0.85 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -2.84 Total: -20.23 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.19 Total: -42.36 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -2.25 Total: -36.78 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 16 Polarization: 28.42 SS G_CDS: -0.59 Total: 27.83 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -39.23 -10.72 -49.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603027390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.204 kcal (2) G-P(sol) polarization free energy of solvation -39.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds