Wall clock time and date at job start Sat Apr 11 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99986 * 2 1 4 4 O 1.20823 * 119.99580 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00079 * 179.97438 * 3 2 1 6 6 C 1.50705 * 109.46745 * 179.97438 * 5 3 2 7 7 C 1.38381 * 119.92655 * 270.01632 * 6 5 3 8 8 C 1.38341 * 120.29512 * 180.02562 * 7 6 5 9 9 C 1.37969 * 120.14852 * 359.70850 * 8 7 6 10 10 C 1.39578 * 119.84925 * 0.52751 * 9 8 7 11 11 C 1.47801 * 120.14714 * 179.77123 * 10 9 8 12 12 O 1.21560 * 120.00166 * 179.72195 * 11 10 9 13 13 N 1.34774 * 119.99939 * 359.72091 * 11 10 9 14 14 C 1.39389 * 119.99817 * 185.11456 * 13 11 10 15 15 C 1.38623 * 119.57804 * 185.35991 * 14 13 11 16 16 C 1.40807 * 118.79183 * 179.70187 * 15 14 13 17 17 C 1.41543 * 120.99566 * 180.25330 * 16 15 14 18 18 H 1.08000 * 119.99589 * 153.74644 * 17 16 15 19 19 C 1.40022 * 120.00145 * 333.74823 * 17 16 15 20 20 N 1.30741 * 119.99909 * 350.15899 * 19 17 16 21 21 Si 1.86800 * 120.00151 * 170.15663 * 19 17 16 22 22 H 1.48501 * 109.47284 * 89.99833 * 21 19 17 23 23 H 1.48501 * 109.47525 * 210.00178 * 21 19 17 24 24 H 1.48505 * 109.47176 * 330.00059 * 21 19 17 25 25 C 1.41180 * 118.00531 * 0.27993 * 16 15 14 26 26 C 1.37585 * 119.02354 * 359.97438 * 25 16 15 27 27 N 1.32083 * 121.11165 * 0.02827 * 26 25 16 28 28 C 1.37923 * 119.92505 * 90.00436 * 6 5 3 29 29 H 1.09003 * 109.46448 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47151 * 299.99734 * 1 2 3 31 31 H 1.08997 * 109.46893 * 60.00331 * 1 2 3 32 32 H 1.09000 * 109.47191 * 60.00307 * 5 3 2 33 33 H 1.08991 * 109.47511 * 299.99683 * 5 3 2 34 34 H 1.08004 * 119.85528 * 0.02562 * 7 6 5 35 35 H 1.08006 * 119.92496 * 180.02562 * 8 7 6 36 36 H 1.08003 * 120.07671 * 180.29587 * 9 8 7 37 37 H 0.96995 * 120.00130 * 5.11729 * 13 11 10 38 38 H 1.07993 * 120.60813 * 359.97438 * 15 14 13 39 39 H 0.97007 * 119.99526 * 179.97438 * 20 19 17 40 40 H 1.08010 * 120.48711 * 180.02562 * 25 16 15 41 41 H 1.08001 * 119.44640 * 180.02562 * 26 25 16 42 42 H 1.08001 * 120.07995 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 3.9935 2.7201 -0.0002 7 6 4.1894 3.3815 -1.1998 8 6 4.5820 4.7080 -1.2094 9 6 4.7751 5.3821 -0.0212 10 6 4.5841 4.7196 1.1924 11 6 4.7940 5.4339 2.4691 12 8 4.6220 4.8558 3.5245 13 7 5.1762 6.7264 2.4632 14 6 5.4774 7.3695 3.6627 15 6 5.7609 8.7264 3.6591 16 6 6.0568 9.3607 4.8809 17 6 6.3478 10.7449 4.9319 18 1 6.1590 11.3034 5.8368 19 6 6.8804 11.3902 3.8092 20 7 7.2881 10.6886 2.7841 21 14 7.0084 13.2535 3.7759 22 1 8.3220 13.6695 4.3295 23 1 6.8869 13.7332 2.3758 24 1 5.9177 13.8393 4.5961 25 6 6.0549 8.5744 6.0535 26 6 5.7664 7.2326 5.9569 27 7 5.4940 6.6752 4.7909 28 6 4.1881 3.3807 1.1948 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.9564 0.7807 -0.8892 33 1 3.9557 0.7811 0.8908 34 1 4.0350 2.8598 -2.1328 35 1 4.7328 5.2185 -2.1492 36 1 5.0770 6.4191 -0.0301 37 1 5.2416 7.2090 1.6244 38 1 5.7508 9.2878 2.7366 39 1 7.6567 11.1357 2.0061 40 1 6.2759 9.0198 7.0123 41 1 5.7627 6.6247 6.8497 42 1 4.0351 2.8634 2.1305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614505323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:19 Heat of formation + Delta-G solvation = -55.216755 kcal Electronic energy + Delta-G solvation = -27537.846326 eV Core-core repulsion = 23448.132420 eV Total energy + Delta-G solvation = -4089.713906 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85069 -40.02694 -38.80256 -37.54566 -36.67551 -34.39772 -33.89265 -33.17974 -31.20208 -30.51082 -29.23331 -28.42081 -27.06129 -26.01256 -24.14935 -22.54538 -21.98452 -21.46012 -20.95310 -19.54046 -17.91547 -17.89758 -17.52085 -16.84521 -16.66029 -16.17021 -15.87970 -15.33159 -14.96962 -14.68838 -14.57905 -14.20722 -13.96131 -13.88991 -13.68230 -13.61066 -13.31178 -12.79212 -12.70367 -12.59617 -12.39432 -12.35030 -12.11063 -11.71463 -11.45424 -11.23628 -11.18434 -11.09558 -10.91957 -10.76837 -10.30785 -10.16463 -9.77477 -9.48096 -9.39621 -8.99836 -8.94988 -8.00113 -7.75782 -7.05364 -6.75988 -4.64049 0.84218 1.18925 1.95516 2.42848 2.63727 2.78643 3.00742 3.05311 3.18620 3.35711 3.56743 3.84579 4.02404 4.25562 4.57699 4.65992 4.69319 4.78021 4.80032 4.87126 4.93184 5.02589 5.14043 5.19744 5.22418 5.43250 5.65593 5.67784 5.84839 5.96466 6.09418 6.25723 6.27375 6.31284 6.56494 6.62957 6.76362 6.79784 6.94350 7.11538 7.36614 7.44883 7.48385 7.76447 7.93041 8.18756 8.40729 8.68446 8.74222 8.84852 9.66419 10.08421 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.002215 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.131098 B =12637.115705 C =13480.368367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.493 6.493 5 C -0.069 4.069 6 C -0.093 4.093 7 C -0.084 4.084 8 C -0.125 4.125 9 C -0.082 4.082 10 C -0.121 4.121 11 C 0.542 3.458 12 O -0.478 6.478 13 N -0.652 5.652 14 C 0.335 3.665 15 C -0.237 4.237 16 C 0.141 3.859 17 C -0.453 4.453 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.795 5.795 21 Si 0.915 3.085 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.281 4.281 26 C 0.118 3.882 27 N -0.553 5.553 28 C -0.044 4.044 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.407 0.593 38 H 0.133 0.867 39 H 0.281 0.719 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -15.226 -12.481 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.300 3.700 4 O -0.379 6.379 5 C -0.107 4.107 6 C -0.094 4.094 7 C -0.102 4.102 8 C -0.143 4.143 9 C -0.101 4.101 10 C -0.124 4.124 11 C 0.327 3.673 12 O -0.349 6.349 13 N -0.298 5.298 14 C 0.110 3.890 15 C -0.263 4.263 16 C 0.133 3.867 17 C -0.485 4.485 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.422 5.422 21 Si 0.739 3.261 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.305 4.305 26 C -0.037 4.037 27 N -0.272 5.272 28 C -0.063 4.063 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.243 0.757 38 H 0.151 0.849 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.142 0.858 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.756 -16.277 -12.007 21.325 hybrid contribution 0.201 2.145 -0.553 2.224 sum -6.556 -14.132 -12.560 20.011 Atomic orbital electron populations 1.23270 0.76203 1.03652 1.02715 1.86493 1.23563 1.33520 1.84393 1.23727 0.91980 0.81430 0.72854 1.90730 1.66984 1.36229 1.43987 1.20280 0.87872 0.95532 1.06994 1.19134 1.02411 0.94206 0.93602 1.21110 0.97223 0.94774 0.97097 1.21033 1.00623 0.94510 0.98097 1.21441 0.96969 0.99874 0.91814 1.20127 1.03794 0.95055 0.93440 1.18291 0.78364 0.82006 0.88630 1.90840 1.46497 1.65921 1.31668 1.43317 1.66415 1.11472 1.08596 1.18172 0.96700 0.88894 0.85186 1.21672 1.11799 0.91592 1.01191 1.17593 0.85892 0.93185 0.90047 1.19573 1.36891 0.93280 0.98722 0.90034 1.25951 0.92733 1.01074 0.94559 1.69741 1.29315 1.37761 1.05355 0.86203 0.79719 0.81719 0.78458 1.19393 1.20055 1.18434 1.21934 1.14722 0.94921 0.98901 1.21760 0.95787 0.92414 0.93715 1.67180 1.23961 1.38842 0.97241 1.21079 0.94172 0.93091 0.97981 0.88081 0.91753 0.91906 0.86528 0.86351 0.85807 0.85214 0.85272 0.75663 0.84898 0.90806 0.87904 0.85809 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.34 10.57 -39.26 -0.41 -3.75 16 3 C 0.46 4.87 7.95 36.00 0.29 5.15 16 4 O -0.49 -7.04 15.78 -18.75 -0.30 -7.34 16 5 C -0.07 -0.56 5.94 -29.03 -0.17 -0.74 16 6 C -0.09 -1.04 4.37 -104.68 -0.46 -1.50 16 7 C -0.08 -0.84 9.69 -39.49 -0.38 -1.22 16 8 C -0.12 -1.31 10.03 -39.64 -0.40 -1.70 16 9 C -0.08 -1.05 9.54 -39.18 -0.37 -1.42 16 10 C -0.12 -1.90 5.87 -104.97 -0.62 -2.51 16 11 C 0.54 10.92 7.72 -12.35 -0.10 10.83 16 12 O -0.48 -11.41 14.64 5.31 0.08 -11.33 16 13 N -0.65 -13.32 5.33 -12.36 -0.07 -13.39 16 14 C 0.34 8.29 7.40 -154.76 -1.15 7.14 16 15 C -0.24 -6.06 8.61 -38.47 -0.33 -6.39 16 16 C 0.14 3.73 5.60 -106.55 -0.60 3.13 16 17 C -0.45 -11.65 9.14 -37.65 -0.34 -11.99 16 18 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 19 C 0.07 1.80 5.31 -17.35 -0.09 1.71 16 20 N -0.80 -19.47 10.70 55.55 0.59 -18.87 16 21 Si 0.91 17.94 29.57 -169.99 -5.03 12.91 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 C -0.28 -6.94 9.90 -38.70 -0.38 -7.32 16 26 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 27 N -0.55 -14.37 7.89 -12.54 -0.10 -14.47 16 28 C -0.04 -0.63 9.24 -39.18 -0.36 -0.99 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 31 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.12 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.12 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.13 1.44 6.42 -52.48 -0.34 1.10 16 37 H 0.41 6.89 6.74 -40.82 -0.28 6.61 16 38 H 0.13 3.36 6.11 -52.49 -0.32 3.04 16 39 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 40 H 0.10 2.32 8.06 -52.48 -0.42 1.89 16 41 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 42 H 0.14 1.96 7.65 -52.49 -0.40 1.56 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -34.46 369.70 -8.93 -43.39 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -4.68 Total: 11.13 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -4.60 Total: -3.85 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.43 Total: -46.73 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.63 Total: -22.43 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.46 -8.93 -43.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614505323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.826 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds