Wall clock time and date at job start Sat Apr 11 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99986 * 2 1 4 4 O 1.20823 * 119.99580 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00079 * 179.97438 * 3 2 1 6 6 C 1.50705 * 109.46745 * 179.97438 * 5 3 2 7 7 C 1.38381 * 119.92655 * 270.01632 * 6 5 3 8 8 C 1.38341 * 120.29512 * 180.02562 * 7 6 5 9 9 C 1.37969 * 120.14852 * 359.70850 * 8 7 6 10 10 C 1.39578 * 119.84925 * 0.52751 * 9 8 7 11 11 C 1.47801 * 120.14714 * 179.77123 * 10 9 8 12 12 O 1.21560 * 120.00166 * 179.72195 * 11 10 9 13 13 N 1.34774 * 119.99939 * 359.72091 * 11 10 9 14 14 C 1.39389 * 119.99817 * 185.11456 * 13 11 10 15 15 C 1.38623 * 119.57804 * 185.35991 * 14 13 11 16 16 C 1.40807 * 118.79183 * 179.70187 * 15 14 13 17 17 C 1.41543 * 120.99566 * 180.25330 * 16 15 14 18 18 H 1.08000 * 119.99589 * 153.74644 * 17 16 15 19 19 C 1.40022 * 120.00145 * 333.74823 * 17 16 15 20 20 N 1.30741 * 119.99909 * 350.15899 * 19 17 16 21 21 Si 1.86800 * 120.00151 * 170.15663 * 19 17 16 22 22 H 1.48501 * 109.47284 * 89.99833 * 21 19 17 23 23 H 1.48501 * 109.47525 * 210.00178 * 21 19 17 24 24 H 1.48505 * 109.47176 * 330.00059 * 21 19 17 25 25 C 1.41180 * 118.00531 * 0.27993 * 16 15 14 26 26 C 1.37585 * 119.02354 * 359.97438 * 25 16 15 27 27 N 1.32083 * 121.11165 * 0.02827 * 26 25 16 28 28 C 1.37923 * 119.92505 * 90.00436 * 6 5 3 29 29 H 1.09003 * 109.46448 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47151 * 299.99734 * 1 2 3 31 31 H 1.08997 * 109.46893 * 60.00331 * 1 2 3 32 32 H 1.09000 * 109.47191 * 60.00307 * 5 3 2 33 33 H 1.08991 * 109.47511 * 299.99683 * 5 3 2 34 34 H 1.08004 * 119.85528 * 0.02562 * 7 6 5 35 35 H 1.08006 * 119.92496 * 180.02562 * 8 7 6 36 36 H 1.08003 * 120.07671 * 180.29587 * 9 8 7 37 37 H 0.96995 * 120.00130 * 5.11729 * 13 11 10 38 38 H 1.07993 * 120.60813 * 359.97438 * 15 14 13 39 39 H 0.97007 * 119.99526 * 179.97438 * 20 19 17 40 40 H 1.08010 * 120.48711 * 180.02562 * 25 16 15 41 41 H 1.08001 * 119.44640 * 180.02562 * 26 25 16 42 42 H 1.08001 * 120.07995 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 3.9935 2.7201 -0.0002 7 6 4.1894 3.3815 -1.1998 8 6 4.5820 4.7080 -1.2094 9 6 4.7751 5.3821 -0.0212 10 6 4.5841 4.7196 1.1924 11 6 4.7940 5.4339 2.4691 12 8 4.6220 4.8558 3.5245 13 7 5.1762 6.7264 2.4632 14 6 5.4774 7.3695 3.6627 15 6 5.7609 8.7264 3.6591 16 6 6.0568 9.3607 4.8809 17 6 6.3478 10.7449 4.9319 18 1 6.1590 11.3034 5.8368 19 6 6.8804 11.3902 3.8092 20 7 7.2881 10.6886 2.7841 21 14 7.0084 13.2535 3.7759 22 1 8.3220 13.6695 4.3295 23 1 6.8869 13.7332 2.3758 24 1 5.9177 13.8393 4.5961 25 6 6.0549 8.5744 6.0535 26 6 5.7664 7.2326 5.9569 27 7 5.4940 6.6752 4.7909 28 6 4.1881 3.3807 1.1948 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.9564 0.7807 -0.8892 33 1 3.9557 0.7811 0.8908 34 1 4.0350 2.8598 -2.1328 35 1 4.7328 5.2185 -2.1492 36 1 5.0770 6.4191 -0.0301 37 1 5.2416 7.2090 1.6244 38 1 5.7508 9.2878 2.7366 39 1 7.6567 11.1357 2.0061 40 1 6.2759 9.0198 7.0123 41 1 5.7627 6.6247 6.8497 42 1 4.0351 2.8634 2.1305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614505323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:18 Heat of formation + Delta-G solvation = -75.203702 kcal Electronic energy + Delta-G solvation = -27538.713025 eV Core-core repulsion = 23448.132420 eV Total energy + Delta-G solvation = -4090.580605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76538 -41.38713 -40.18134 -39.10555 -37.50748 -36.19267 -35.62901 -34.14578 -32.52663 -32.16836 -30.52337 -29.64998 -27.94561 -27.74718 -25.45900 -23.87823 -23.44578 -22.92495 -22.01029 -21.02358 -19.56152 -18.96999 -18.68375 -17.73709 -17.56468 -17.36312 -17.27251 -16.89557 -16.22816 -16.11964 -16.07714 -15.91559 -15.53354 -14.92268 -14.65354 -14.63257 -14.42058 -14.37860 -14.28040 -14.13359 -13.38479 -13.17833 -13.07914 -12.95711 -12.87296 -12.72362 -12.58940 -12.14376 -12.11351 -11.91910 -11.81122 -11.62804 -11.55946 -11.21442 -11.12841 -9.99858 -9.95028 -9.88911 -9.66725 -8.91690 -8.60138 -6.59794 -0.22171 0.25878 0.79314 0.98022 1.16981 1.41125 1.52628 1.56591 1.72511 2.02834 2.03857 2.20191 2.77224 2.90553 3.45904 3.51677 3.71595 3.86151 3.96179 4.06027 4.14723 4.21764 4.28009 4.30974 4.32336 4.52865 4.60412 4.70569 4.72121 4.76865 4.82905 4.89768 4.96376 5.05765 5.22406 5.29501 5.35293 5.37390 5.41308 5.44876 5.59040 5.86865 5.90658 6.10755 6.42653 6.53396 6.71595 6.76665 6.81823 7.18924 7.77934 8.28056 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.002215 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.131098 B =12637.115705 C =13480.368367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.460 3.540 4 O -0.538 6.538 5 C -0.067 4.067 6 C -0.093 4.093 7 C -0.072 4.072 8 C -0.120 4.120 9 C -0.087 4.087 10 C -0.149 4.149 11 C 0.539 3.461 12 O -0.526 6.526 13 N -0.646 5.646 14 C 0.330 3.670 15 C -0.254 4.254 16 C 0.111 3.889 17 C -0.481 4.481 18 H 0.084 0.916 19 C 0.035 3.965 20 N -0.816 5.816 21 Si 0.991 3.009 22 H -0.263 1.263 23 H -0.263 1.263 24 H -0.259 1.259 25 C -0.294 4.294 26 C 0.111 3.889 27 N -0.580 5.580 28 C -0.061 4.061 29 H 0.133 0.867 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.159 0.841 33 H 0.133 0.867 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.139 0.861 37 H 0.421 0.579 38 H 0.131 0.869 39 H 0.292 0.708 40 H 0.119 0.881 41 H 0.151 0.849 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 -15.619 -15.332 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.304 3.696 4 O -0.428 6.428 5 C -0.103 4.103 6 C -0.093 4.093 7 C -0.090 4.090 8 C -0.137 4.137 9 C -0.105 4.105 10 C -0.153 4.153 11 C 0.328 3.672 12 O -0.401 6.401 13 N -0.293 5.293 14 C 0.104 3.896 15 C -0.280 4.280 16 C 0.103 3.897 17 C -0.512 4.512 18 H 0.103 0.897 19 C -0.181 4.181 20 N -0.442 5.442 21 Si 0.811 3.189 22 H -0.187 1.187 23 H -0.187 1.187 24 H -0.183 1.183 25 C -0.318 4.318 26 C -0.042 4.042 27 N -0.300 5.300 28 C -0.080 4.080 29 H 0.151 0.849 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.176 0.824 33 H 0.151 0.849 34 H 0.182 0.818 35 H 0.183 0.817 36 H 0.157 0.843 37 H 0.260 0.740 38 H 0.148 0.852 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.168 0.832 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.543 -16.704 -14.891 23.315 hybrid contribution 0.103 2.154 0.247 2.171 sum -6.440 -14.550 -14.645 21.625 Atomic orbital electron populations 1.23515 0.75094 1.05654 1.02238 1.86493 1.24711 1.32733 1.83853 1.24186 0.92832 0.81096 0.71440 1.90720 1.68100 1.37618 1.46318 1.20432 0.86206 0.93961 1.09731 1.19427 1.01360 0.95727 0.92799 1.21654 0.94544 0.94659 0.98113 1.21465 0.99042 0.94840 0.98369 1.21620 0.96824 1.00480 0.91598 1.19837 1.07581 0.95758 0.92087 1.19062 0.76717 0.81508 0.89960 1.90791 1.48692 1.66731 1.33873 1.43324 1.66111 1.11928 1.07980 1.18436 0.95870 0.89059 0.86216 1.21657 1.13251 0.92019 1.01030 1.18045 0.86476 0.94199 0.90973 1.19869 1.37994 0.93408 0.99928 0.89743 1.26847 0.91650 1.05980 0.93620 1.69777 1.28612 1.39963 1.05877 0.85064 0.79707 0.75135 0.78968 1.18749 1.18735 1.18330 1.22125 1.15232 0.95136 0.99262 1.22231 0.94888 0.92797 0.94331 1.67302 1.25125 1.39542 0.98050 1.21120 0.95237 0.92799 0.98892 0.84864 0.92859 0.91836 0.82365 0.84910 0.81815 0.81689 0.84345 0.74014 0.85164 0.89678 0.86329 0.83156 0.86339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.36 -5.98 10.57 -51.43 -0.54 -6.53 16 3 C 0.46 9.04 7.95 71.23 0.57 9.60 16 4 O -0.54 -15.07 15.78 21.97 0.35 -14.73 16 5 C -0.07 -0.90 5.94 29.10 0.17 -0.73 16 6 C -0.09 -1.89 4.37 -19.90 -0.09 -1.98 16 7 C -0.07 -1.17 9.69 22.33 0.22 -0.96 16 8 C -0.12 -2.12 10.03 22.23 0.22 -1.90 16 9 C -0.09 -2.12 9.54 22.53 0.21 -1.90 16 10 C -0.15 -4.81 5.87 -20.09 -0.12 -4.93 16 11 C 0.54 22.89 7.72 86.77 0.67 23.56 16 12 O -0.53 -26.69 14.64 -3.90 -0.06 -26.75 16 13 N -0.65 -27.61 5.33 -311.30 -1.66 -29.27 16 14 C 0.33 17.03 7.40 132.78 0.98 18.01 16 15 C -0.25 -13.49 8.61 22.99 0.20 -13.30 16 16 C 0.11 6.08 5.60 -21.11 -0.12 5.96 16 17 C -0.48 -25.16 9.14 23.52 0.21 -24.94 16 18 H 0.08 4.21 7.87 -2.91 -0.02 4.19 16 19 C 0.04 1.69 5.31 85.29 0.45 2.15 16 20 N -0.82 -40.03 10.70 21.84 0.23 -39.80 16 21 Si 0.99 36.09 29.57 68.60 2.03 38.12 16 22 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 23 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 24 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 25 C -0.29 -14.94 9.90 22.84 0.23 -14.71 16 26 C 0.11 5.57 11.15 84.50 0.94 6.51 16 27 N -0.58 -31.40 7.89 -193.57 -1.53 -32.93 16 28 C -0.06 -1.77 9.24 22.53 0.21 -1.56 16 29 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.79 8.13 -2.39 -0.02 0.77 16 31 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 32 H 0.16 0.84 8.08 -2.39 -0.02 0.82 16 33 H 0.13 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 36 H 0.14 2.98 6.42 -2.91 -0.02 2.96 16 37 H 0.42 14.80 6.74 -92.71 -0.63 14.17 16 38 H 0.13 6.82 6.11 -2.91 -0.02 6.81 16 39 H 0.29 12.74 8.29 -92.70 -0.77 11.97 16 40 H 0.12 5.46 8.06 -2.91 -0.02 5.43 16 41 H 0.15 6.47 8.06 -2.91 -0.02 6.44 16 42 H 0.12 3.69 7.65 -2.91 -0.02 3.67 16 Total: -1.00 -79.05 369.70 5.44 -73.61 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: 0.45 Total: 37.83 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 6.16 Total: 0.44 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -2.95 Total: -102.00 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -0.25 Total: -48.00 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Total: -79.05 5.44 -73.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614505323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.596 kcal (2) G-P(sol) polarization free energy of solvation -79.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds