Wall clock time and date at job start Sat Apr 11 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46955 * 221.42319 * 3 2 1 5 5 C 1.34778 * 119.99889 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00015 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.99782 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.47459 * 54.88514 * 7 5 4 9 9 C 1.53001 * 109.47166 * 294.87979 * 7 5 4 10 10 O 1.45202 * 109.46840 * 174.88186 * 7 5 4 11 11 C 1.34866 * 116.99900 * 207.55410 * 10 7 5 12 12 O 1.21600 * 120.00180 * 5.39223 * 11 10 7 13 13 C 1.46712 * 120.00218 * 185.38474 * 11 10 7 14 14 C 1.36217 * 125.45252 * 185.05238 * 13 11 10 15 15 C 1.41654 * 107.74432 * 180.27981 * 14 13 11 16 16 C 1.40046 * 133.34141 * 179.76223 * 15 14 13 17 17 C 1.36566 * 119.83208 * 180.02562 * 16 15 14 18 18 C 1.38853 * 120.60355 * 359.95415 * 17 16 15 19 19 C 1.37848 * 120.63967 * 0.02562 * 18 17 16 20 20 C 1.39092 * 119.81011 * 0.02562 * 19 18 17 21 21 N 1.37823 * 133.14703 * 179.97438 * 20 19 18 22 22 C 1.36874 * 125.62094 * 359.97438 * 21 20 19 23 23 H 1.08000 * 119.99938 * 139.06497 * 22 21 20 24 24 C 1.39022 * 120.00287 * 319.05991 * 22 21 20 25 25 N 1.31344 * 119.99552 * 336.02875 * 24 22 21 26 26 Si 1.86795 * 120.00089 * 156.02457 * 24 22 21 27 27 H 1.48503 * 109.47086 * 184.99853 * 26 24 22 28 28 H 1.48506 * 109.47142 * 304.99646 * 26 24 22 29 29 H 1.48495 * 109.47083 * 64.99676 * 26 24 22 30 30 H 4.40646 * 5.51381 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.46796 * 101.42903 * 3 2 1 32 32 H 1.08995 * 109.47215 * 341.42921 * 3 2 1 33 33 H 0.97001 * 119.99601 * 0.02562 * 4 3 2 34 34 H 1.09007 * 109.47263 * 300.00480 * 9 7 5 35 35 H 1.09001 * 109.47067 * 60.00000 * 9 7 5 36 36 H 1.08999 * 109.47364 * 180.02562 * 9 7 5 37 37 H 1.08007 * 126.12723 * 0.03918 * 14 13 11 38 38 H 1.08007 * 120.07876 * 359.97032 * 16 15 14 39 39 H 1.08003 * 119.69630 * 179.97438 * 17 16 15 40 40 H 1.07997 * 119.68652 * 180.02562 * 18 17 16 41 41 H 1.07997 * 120.09309 * 179.97438 * 19 18 17 42 42 H 0.96995 * 120.00306 * 353.25252 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 1.0366 0.9139 5 6 4.4589 1.2222 1.0764 6 8 5.2474 0.5314 0.4665 7 6 4.9607 2.2874 2.0169 8 1 4.5250 2.1350 3.0043 9 6 4.5572 3.6655 1.4885 10 8 6.4077 2.2091 2.1091 11 6 6.9724 2.6409 3.2551 12 8 6.2708 2.9790 4.1890 13 6 8.4333 2.7026 3.3753 14 6 9.1201 3.0260 4.5063 15 6 10.5025 2.9764 4.2010 16 6 11.6615 3.2121 4.9509 17 6 12.8881 3.0818 4.3648 18 6 12.9984 2.7160 3.0299 19 6 11.8723 2.4782 2.2712 20 6 10.6120 2.6057 2.8457 21 7 9.3332 2.4398 2.3591 22 6 9.0077 2.0790 1.0795 23 1 8.2079 1.3749 0.9039 24 6 9.7066 2.6191 0.0059 25 7 10.3214 3.7725 0.1360 26 14 9.7713 1.7045 -1.6215 27 1 10.6711 2.4242 -2.5584 28 1 10.2875 0.3303 -1.3968 29 1 8.4069 1.6318 -2.2031 30 1 -1.0501 -0.0004 -0.0001 31 1 3.0093 0.2045 -1.0073 32 1 3.0099 -0.9733 0.3273 33 1 2.5033 1.5889 1.4019 34 1 4.9930 3.8179 0.5010 35 1 3.4710 3.7243 1.4193 36 1 4.9205 4.4360 2.1685 37 1 8.6880 3.2791 5.4632 38 1 11.5854 3.4972 5.9899 39 1 13.7805 3.2645 4.9451 40 1 13.9759 2.6168 2.5815 41 1 11.9683 2.1946 1.2336 42 1 10.2079 4.2939 0.9460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729767119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:34 Heat of formation + Delta-G solvation = -5.131441 kcal Electronic energy + Delta-G solvation = -28950.441040 eV Core-core repulsion = 24862.898996 eV Total energy + Delta-G solvation = -4087.542044 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.76857 -40.14553 -39.05233 -36.21458 -36.02111 -35.52016 -33.76061 -33.10362 -31.65323 -30.66841 -29.12066 -28.23994 -27.42363 -24.90141 -24.65303 -23.23230 -21.09205 -20.77995 -20.32056 -19.50974 -19.02357 -18.42457 -17.36521 -17.14615 -16.22480 -15.88321 -15.66565 -15.48085 -15.34048 -14.96032 -14.35310 -14.21590 -13.94525 -13.66371 -13.63075 -13.35981 -13.12529 -13.02926 -12.76594 -12.52123 -12.24935 -12.15873 -11.86166 -11.47499 -11.16182 -11.09434 -10.92197 -10.82794 -10.54240 -10.48100 -10.36431 -10.30859 -10.18301 -9.90331 -9.67775 -9.31045 -9.11816 -8.83142 -7.52153 -7.11109 -6.80465 -4.49264 1.51888 1.96976 2.39061 2.53616 2.60469 2.74467 2.81770 3.19145 3.20386 3.40001 3.54146 3.89192 3.90618 3.99568 4.36998 4.53564 4.68292 4.88085 4.89207 4.99443 5.23347 5.25353 5.31452 5.48348 5.64086 5.68004 5.74301 5.83326 6.00114 6.07010 6.09699 6.26098 6.37456 6.48714 6.68342 6.79602 6.88820 6.95584 7.12187 7.22165 7.34018 7.41617 7.48196 7.72989 7.79789 7.82626 8.05977 8.15154 8.36774 8.76410 9.07475 10.10431 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.003480 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.367072 B = 8044.385975 C = 9509.044744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.206 4.206 3 C 0.231 3.769 4 N -0.730 5.730 5 C 0.520 3.480 6 O -0.500 6.500 7 C 0.067 3.933 8 H 0.107 0.893 9 C -0.163 4.163 10 O -0.303 6.303 11 C 0.546 3.454 12 O -0.528 6.528 13 C -0.027 4.027 14 C -0.164 4.164 15 C -0.126 4.126 16 C -0.083 4.083 17 C -0.155 4.155 18 C -0.141 4.141 19 C -0.071 4.071 20 C 0.055 3.945 21 N -0.239 5.239 22 C -0.412 4.412 23 H 0.121 0.879 24 C 0.029 3.971 25 N -0.817 5.817 26 Si 1.075 2.925 27 H -0.273 1.273 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.222 0.778 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.404 0.596 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.267 -2.806 0.152 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.206 4.206 3 C 0.109 3.891 4 N -0.386 5.386 5 C 0.305 3.695 6 O -0.373 6.373 7 C 0.008 3.992 8 H 0.125 0.875 9 C -0.221 4.221 10 O -0.218 6.218 11 C 0.394 3.606 12 O -0.418 6.418 13 C -0.140 4.140 14 C -0.191 4.191 15 C -0.130 4.130 16 C -0.102 4.102 17 C -0.174 4.174 18 C -0.161 4.161 19 C -0.091 4.091 20 C -0.060 4.060 21 N 0.100 4.900 22 C -0.541 4.541 23 H 0.138 0.862 24 C -0.187 4.187 25 N -0.443 5.443 26 Si 0.897 3.103 27 H -0.198 1.198 28 H -0.200 1.200 29 H -0.198 1.198 30 H 0.239 0.761 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.238 0.762 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.153 0.847 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.347 -3.262 -1.916 11.961 hybrid contribution -1.481 0.370 1.839 2.390 sum -12.828 -2.892 -0.076 13.150 Atomic orbital electron populations 1.25018 0.95915 0.98862 0.99338 1.22933 0.94226 1.01855 1.01601 1.18074 0.83002 0.92716 0.95293 1.45823 1.06813 1.38648 1.47339 1.20229 0.81910 0.84382 0.82950 1.90799 1.54696 1.45939 1.45830 1.22273 0.81947 0.95059 0.99902 0.87493 1.22144 1.01721 0.94702 1.03534 1.87040 1.19658 1.76346 1.38755 1.20130 0.87825 0.73090 0.79505 1.90775 1.63056 1.48303 1.39711 1.19095 0.85635 1.16633 0.92594 1.20276 0.91232 1.10559 0.97066 1.17900 0.92944 1.08644 0.93557 1.20095 0.91095 1.00846 0.98154 1.20334 0.96409 1.05258 0.95364 1.20585 0.96909 1.04275 0.94361 1.20193 0.89394 1.00105 0.99358 1.18357 0.86096 1.08742 0.92783 1.40341 1.02233 1.39716 1.07744 1.21094 1.24128 1.28704 0.80137 0.86164 1.26899 0.92549 0.95450 1.03788 1.70621 1.35057 1.08280 1.30350 0.83439 0.77956 0.75669 0.73209 1.19781 1.19955 1.19827 0.76129 0.88724 0.88816 0.76181 0.90558 0.90703 0.90486 0.84737 0.87446 0.87532 0.87172 0.86392 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 19.25 29.55 0.57 -0.66 16 2 C -0.21 -1.82 13.46 -37.12 -0.50 -2.32 16 3 C 0.23 2.32 6.15 -6.83 -0.04 2.28 16 4 N -0.73 -7.96 5.50 -63.16 -0.35 -8.31 16 5 C 0.52 8.05 7.18 -10.99 -0.08 7.97 16 6 O -0.50 -9.97 16.51 -14.05 -0.23 -10.20 16 7 C 0.07 1.08 2.99 -27.88 -0.08 1.00 16 8 H 0.11 1.57 7.17 -51.93 -0.37 1.19 16 9 C -0.16 -2.19 9.48 37.16 0.35 -1.83 16 10 O -0.30 -6.53 7.19 -47.62 -0.34 -6.87 16 11 C 0.55 12.42 7.85 34.15 0.27 12.68 16 12 O -0.53 -11.66 16.12 -19.34 -0.31 -11.98 16 13 C -0.03 -0.65 6.76 -82.27 -0.56 -1.21 16 14 C -0.16 -3.78 10.55 -39.01 -0.41 -4.19 16 15 C -0.13 -2.92 6.16 -106.90 -0.66 -3.58 16 16 C -0.08 -1.65 10.06 -39.51 -0.40 -2.05 16 17 C -0.15 -2.89 9.97 -39.96 -0.40 -3.29 16 18 C -0.14 -2.81 10.02 -39.50 -0.40 -3.21 16 19 C -0.07 -1.66 8.78 -39.41 -0.35 -2.00 16 20 C 0.06 1.38 5.58 -83.83 -0.47 0.92 16 21 N -0.24 -6.21 2.56 -56.10 -0.14 -6.35 16 22 C -0.41 -10.86 8.65 -15.01 -0.13 -10.99 16 23 H 0.12 3.27 6.85 -52.49 -0.36 2.91 16 24 C 0.03 0.74 4.17 -17.47 -0.07 0.67 16 25 N -0.82 -21.75 12.15 55.50 0.67 -21.07 16 26 Si 1.07 22.57 29.98 -169.99 -5.10 17.47 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 28 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 29 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 30 H 0.22 0.77 7.80 -54.08 -0.42 0.35 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.40 3.29 8.24 -40.82 -0.34 2.96 16 34 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 35 H 0.07 0.70 7.93 -51.93 -0.41 0.28 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.13 2.78 8.06 -52.48 -0.42 2.36 16 38 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 39 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.12 2.84 6.82 -52.49 -0.36 2.48 16 42 H 0.29 8.06 7.45 -40.82 -0.30 7.76 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -32.07 375.45 -8.23 -40.31 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -4.74 Total: 11.17 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -3.35 Total: -9.83 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.18 Total: -35.73 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.89 Total: -29.05 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.10 Total: 17.47 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.07 -8.23 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729767119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.175 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds