Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99833 * 2 1 4 4 O 1.21549 * 119.99975 * 359.97438 * 3 2 1 5 5 C 1.47863 * 119.99620 * 180.02562 * 3 2 1 6 6 C 1.39706 * 120.07312 * 359.97438 * 5 3 2 7 7 C 1.38062 * 120.14473 * 180.02562 * 6 5 3 8 8 C 1.38097 * 120.30025 * 359.95867 * 7 6 5 9 9 C 1.39680 * 120.14151 * 0.02562 * 8 7 6 10 10 C 1.47828 * 120.07446 * 179.97438 * 9 8 7 11 11 O 1.21554 * 120.00164 * 179.97438 * 10 9 8 12 12 N 1.34775 * 119.99533 * 359.97438 * 10 9 8 13 13 C 1.39855 * 119.99883 * 175.49150 * 12 10 9 14 14 C 1.38980 * 120.03755 * 215.11433 * 13 12 10 15 15 C 1.38150 * 120.06367 * 180.02562 * 14 13 12 16 16 C 1.38170 * 120.14206 * 359.74452 * 15 14 13 17 17 C 1.38908 * 120.07418 * 0.50903 * 16 15 14 18 18 O 1.35750 * 120.03362 * 179.77018 * 17 16 15 19 19 C 1.34827 * 116.99801 * 354.33743 * 18 17 16 20 20 H 1.07995 * 120.00266 * 5.02700 * 19 18 17 21 21 C 1.38656 * 120.00068 * 185.02520 * 19 18 17 22 22 N 1.31568 * 119.99700 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00408 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47129 * 90.00134 * 23 21 19 25 25 H 1.48502 * 109.47144 * 210.00170 * 23 21 19 26 26 H 1.48496 * 109.47002 * 330.00078 * 23 21 19 27 27 C 1.38726 * 120.03777 * 35.12854 * 13 12 10 28 28 C 1.39296 * 120.07113 * 180.22939 * 5 3 2 29 29 H 1.09005 * 109.47239 * 59.99830 * 1 2 3 30 30 H 1.08994 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46924 * 300.00349 * 1 2 3 32 32 H 0.96994 * 120.00168 * 179.97438 * 2 1 3 33 33 H 1.07996 * 119.92456 * 0.02562 * 6 5 3 34 34 H 1.08001 * 119.84572 * 179.97438 * 7 6 5 35 35 H 1.07996 * 119.92528 * 180.02562 * 8 7 6 36 36 H 0.97001 * 120.00724 * 355.48293 * 12 10 9 37 37 H 1.08002 * 119.96533 * 0.03942 * 14 13 12 38 38 H 1.08000 * 119.92920 * 180.02562 * 15 14 13 39 39 H 1.08003 * 119.96484 * 180.25528 * 16 15 14 40 40 H 0.96998 * 119.99487 * 179.97438 * 22 21 19 41 41 H 1.08004 * 120.07066 * 0.02562 * 27 13 12 42 42 H 1.07997 * 120.14618 * 0.02562 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1672 -0.0006 6 6 4.3175 -0.0418 -0.0006 7 6 5.6982 -0.0436 -0.0006 8 6 6.3964 1.1478 -0.0014 9 6 5.7090 2.3637 -0.0018 10 6 6.4579 3.6382 -0.0021 11 8 5.8583 4.6956 -0.0029 12 7 7.8056 3.6277 -0.0016 13 6 8.5143 4.8296 -0.0971 14 6 9.7151 4.8756 -0.7953 15 6 10.4159 6.0625 -0.8895 16 6 9.9231 7.2083 -0.2950 17 6 8.7261 7.1678 0.4087 18 8 8.2450 8.2929 0.9964 19 6 9.0324 9.3868 0.9603 20 1 9.9610 9.3658 0.4095 21 6 8.6497 10.5388 1.6304 22 7 7.5185 10.5642 2.3018 23 14 9.7408 12.0542 1.5811 24 1 9.3606 12.9004 0.4215 25 1 9.5692 12.8288 2.8364 26 1 11.1599 11.6382 1.4461 27 6 8.0195 5.9773 0.5051 28 6 4.3155 2.3726 0.0043 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9500 -0.8400 0.0004 33 1 3.7775 -0.9771 -0.0006 34 1 6.2344 -0.9811 -0.0002 35 1 7.4764 1.1394 -0.0018 36 1 8.2842 2.7866 0.0652 37 1 10.1007 3.9827 -1.2648 38 1 11.3486 6.0959 -1.4330 39 1 10.4712 8.1355 -0.3740 40 1 7.2510 11.3700 2.7709 41 1 7.0869 5.9441 1.0488 42 1 3.7791 3.3100 0.0088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741903582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = -30.768709 kcal Electronic energy + Delta-G solvation = -27297.296229 eV Core-core repulsion = 23208.642469 eV Total energy + Delta-G solvation = -4088.653759 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.84228 -40.03791 -38.83515 -38.05801 -36.47930 -35.06915 -34.23985 -32.24182 -31.99300 -31.45246 -29.45558 -28.46619 -27.29514 -25.32211 -24.54222 -23.56748 -22.16632 -21.48101 -21.17053 -20.14518 -18.92179 -18.20722 -17.26073 -16.80325 -16.47467 -16.35721 -15.69107 -15.60163 -15.09627 -15.03288 -14.84132 -14.64527 -14.20661 -14.13927 -14.06375 -13.67350 -13.53236 -13.42516 -12.90917 -12.76206 -12.62115 -12.49119 -12.33874 -11.72325 -11.70669 -11.50359 -11.21123 -10.98974 -10.78092 -10.44109 -10.36190 -9.86405 -9.75763 -9.63610 -9.42006 -9.38075 -9.17432 -8.79291 -7.70734 -7.17403 -6.39067 -3.98336 0.25210 0.72354 2.01674 2.33832 2.38915 2.72261 3.00821 3.12496 3.17138 3.18753 3.22365 3.62885 4.00628 4.18565 4.28034 4.38515 4.58190 4.67020 4.70704 4.81832 4.98536 5.11825 5.13585 5.19009 5.36384 5.41359 5.48753 5.63048 5.79628 5.81546 5.85280 5.89842 5.93541 6.09432 6.21121 6.34349 6.40090 6.67968 6.87243 7.02602 7.04490 7.09421 7.36200 7.49343 7.64627 7.79475 7.82495 8.05440 8.27530 9.05453 9.76885 10.78723 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.002206 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.077424 B =12689.755937 C =14248.213880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.734 5.734 3 C 0.557 3.443 4 O -0.524 6.524 5 C -0.144 4.144 6 C -0.066 4.066 7 C -0.132 4.132 8 C -0.061 4.061 9 C -0.131 4.131 10 C 0.548 3.452 11 O -0.497 6.497 12 N -0.663 5.663 13 C 0.173 3.827 14 C -0.235 4.235 15 C -0.058 4.058 16 C -0.244 4.244 17 C 0.166 3.834 18 O -0.172 6.172 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.038 3.962 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.267 1.267 27 C -0.186 4.186 28 C 0.001 3.999 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.400 0.600 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.404 0.596 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.270 0.730 41 H 0.135 0.865 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 -27.634 -5.015 28.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.386 5.386 3 C 0.345 3.655 4 O -0.401 6.401 5 C -0.147 4.147 6 C -0.085 4.085 7 C -0.150 4.150 8 C -0.080 4.080 9 C -0.135 4.135 10 C 0.335 3.665 11 O -0.371 6.371 12 N -0.308 5.308 13 C 0.080 3.920 14 C -0.256 4.256 15 C -0.077 4.077 16 C -0.264 4.264 17 C 0.111 3.889 18 O -0.075 6.075 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.207 4.207 28 C -0.019 4.019 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.235 0.765 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.240 0.760 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.152 0.848 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.570 -25.891 -4.751 26.906 hybrid contribution 1.093 -0.227 -0.060 1.118 sum -4.476 -26.118 -4.811 26.932 Atomic orbital electron populations 1.21576 0.78969 1.02349 1.02762 1.45677 1.08003 1.08435 1.76510 1.18250 0.87094 0.83868 0.76328 1.90841 1.69711 1.31025 1.48484 1.19839 0.92942 0.94168 1.07796 1.21444 0.94738 0.96796 0.95492 1.21032 0.93826 0.98343 1.01813 1.21570 1.00327 0.91642 0.94479 1.19949 0.94059 0.93233 1.06213 1.18241 0.82060 0.88863 0.77297 1.90901 1.68219 1.31529 1.46461 1.43208 1.05852 1.08758 1.72990 1.17147 0.92439 0.84958 0.97490 1.20253 0.98193 0.98719 1.08433 1.20494 0.98021 0.91899 0.97321 1.21188 0.99405 0.99483 1.06326 1.19137 0.91110 0.87532 0.91075 1.83998 1.42031 1.15668 1.65803 1.21348 1.03922 0.88265 1.33286 0.88963 1.25321 0.97035 0.98660 0.95610 1.70064 1.20670 1.28851 1.29813 0.85698 0.79379 0.80106 0.78136 1.19880 1.20285 1.19191 1.20196 1.03423 0.90212 1.06843 1.21457 0.92440 0.98798 0.89192 0.91930 0.90485 0.91915 0.76479 0.85248 0.84493 0.84875 0.75987 0.87366 0.87000 0.85417 0.91999 0.84764 0.82912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.85 0.64 1.15 16 2 N -0.73 -5.01 5.66 -68.04 -0.39 -5.40 16 3 C 0.56 6.24 7.77 -12.32 -0.10 6.14 16 4 O -0.52 -8.28 16.34 5.32 0.09 -8.19 16 5 C -0.14 -1.47 5.87 -105.02 -0.62 -2.08 16 6 C -0.07 -0.42 9.54 -39.10 -0.37 -0.79 16 7 C -0.13 -0.78 10.02 -39.70 -0.40 -1.17 16 8 C -0.06 -0.49 9.54 -39.09 -0.37 -0.86 16 9 C -0.13 -1.60 5.87 -105.02 -0.62 -2.22 16 10 C 0.55 8.90 7.61 -12.34 -0.09 8.80 16 11 O -0.50 -10.62 13.78 5.32 0.07 -10.54 16 12 N -0.66 -9.69 5.28 -10.74 -0.06 -9.75 16 13 C 0.17 3.26 6.29 -83.74 -0.53 2.73 16 14 C -0.23 -4.00 9.96 -39.34 -0.39 -4.40 16 15 C -0.06 -1.07 10.03 -39.64 -0.40 -1.47 16 16 C -0.24 -5.43 9.17 -39.36 -0.36 -5.79 16 17 C 0.17 4.26 6.64 -39.14 -0.26 4.00 16 18 O -0.17 -5.17 9.76 0.06 0.00 -5.17 16 19 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 20 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -26.13 13.67 55.48 0.76 -25.37 16 23 Si 0.94 21.02 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 27 C -0.19 -4.36 8.64 -39.20 -0.34 -4.70 16 28 C 0.00 0.01 9.14 -38.78 -0.35 -0.34 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.40 1.33 6.85 -40.82 -0.28 1.05 16 33 H 0.13 0.33 6.39 -52.49 -0.34 0.00 16 34 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 35 H 0.13 0.69 6.40 -52.49 -0.34 0.36 16 36 H 0.40 4.02 6.86 -40.82 -0.28 3.74 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.13 2.81 5.63 -52.48 -0.30 2.51 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.13 3.40 6.23 -52.48 -0.33 3.07 16 42 H 0.15 2.39 7.23 -52.49 -0.38 2.01 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -38.79 364.82 -7.58 -46.37 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.18 Total: 7.57 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -4.36 Total: -11.01 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.32 Total: -40.52 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.16 Total: -23.91 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.79 -7.58 -46.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741903582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.606 kcal (2) G-P(sol) polarization free energy of solvation -38.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds