Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31284 * 1 3 3 Si 1.86804 * 120.00104 * 2 1 4 4 H 1.48496 * 109.47257 * 274.99994 * 3 2 1 5 5 H 1.48502 * 109.46670 * 35.00406 * 3 2 1 6 6 H 1.48502 * 109.46646 * 154.99807 * 3 2 1 7 7 C 1.39005 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99802 * 185.10010 * 7 2 1 9 9 N 1.37296 * 120.00133 * 5.09926 * 7 2 1 10 10 C 1.36443 * 126.05364 * 174.90614 * 9 7 2 11 11 C 1.35788 * 107.49604 * 180.02562 * 10 9 7 12 12 N 1.40297 * 126.10126 * 180.02562 * 11 10 9 13 13 C 1.34770 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21408 * 120.00222 * 359.97438 * 13 12 11 15 15 C 1.49307 * 119.99877 * 179.97438 * 13 12 11 16 16 O 1.21366 * 120.00020 * 359.97438 * 15 13 12 17 17 N 1.34781 * 120.00221 * 179.97438 * 15 13 12 18 18 C 1.46496 * 120.00085 * 174.42198 * 17 15 13 19 19 C 1.50695 * 115.55284 * 303.33426 * 18 17 15 20 20 C 1.38232 * 120.00194 * 335.03690 * 19 18 17 21 21 C 1.38234 * 120.00104 * 179.73938 * 20 19 18 22 22 C 1.38237 * 119.99826 * 0.53195 * 21 20 19 23 23 C 1.38235 * 119.99986 * 359.74157 * 22 21 20 24 24 C 1.38230 * 119.99913 * 359.97438 * 23 22 21 25 25 C 1.53005 * 117.49591 * 157.66706 * 18 17 15 26 26 C 1.53000 * 117.49552 * 89.01298 * 18 17 15 27 27 C 1.40722 * 107.79985 * 0.02562 * 11 10 9 28 28 N 1.30874 * 108.37832 * 0.02562 * 27 11 10 29 29 H 0.97004 * 119.99410 * 359.97438 * 1 2 3 30 30 H 1.07999 * 126.25141 * 359.77637 * 10 9 7 31 31 H 0.97003 * 119.99222 * 359.97438 * 12 11 10 32 32 H 0.97001 * 119.99576 * 354.42719 * 17 15 13 33 33 H 1.08004 * 120.00055 * 359.97438 * 20 19 18 34 34 H 1.08001 * 120.00406 * 180.29524 * 21 20 19 35 35 H 1.08005 * 119.99747 * 179.77071 * 22 21 20 36 36 H 1.07994 * 120.00022 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.00032 * 179.97438 * 24 23 22 38 38 H 1.09003 * 117.49872 * 0.02562 * 25 18 17 39 39 H 1.08996 * 117.49768 * 145.02193 * 25 18 17 40 40 H 1.09004 * 117.49276 * 214.97517 * 26 18 17 41 41 H 1.09003 * 117.50034 * 359.96768 * 26 18 17 42 42 H 1.08000 * 125.81059 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3887 2.1075 -1.3947 5 1 1.5011 2.6198 0.8032 6 1 3.5933 1.4118 0.5918 7 6 2.0078 -1.2038 -0.0005 8 1 3.0847 -1.2057 0.0826 9 7 1.3254 -2.3905 -0.1067 10 6 1.8834 -3.6306 -0.2178 11 6 0.8686 -4.5291 -0.2988 12 7 1.0040 -5.9200 -0.4231 13 6 -0.0927 -6.7001 -0.4940 14 8 -1.1978 -6.1993 -0.4500 15 6 0.0514 -8.1803 -0.6268 16 8 1.1561 -8.6809 -0.6713 17 7 -1.0453 -8.9606 -0.6973 18 6 -0.9074 -10.3970 -0.9500 19 6 -0.1673 -10.7672 -2.2094 20 6 -0.1215 -9.8818 -3.2699 21 6 0.5620 -10.2193 -4.4231 22 6 1.1903 -11.4468 -4.5200 23 6 1.1397 -12.3346 -3.4616 24 6 0.4612 -11.9947 -2.3062 25 6 -2.0597 -11.3046 -0.5150 26 6 -0.7414 -11.3148 0.2628 27 6 -0.3431 -3.8164 -0.2359 28 7 -0.0669 -2.5422 -0.1223 29 1 -0.4849 0.8401 0.0004 30 1 2.9394 -3.8559 -0.2415 31 1 1.8869 -6.3200 -0.4586 32 1 -1.9260 -8.5710 -0.5807 33 1 -0.6164 -8.9247 -3.1960 34 1 0.6018 -9.5255 -5.2499 35 1 1.7211 -11.7119 -5.4224 36 1 1.6309 -13.2934 -3.5371 37 1 0.4213 -12.6884 -1.4795 38 1 -2.9207 -10.8329 -0.0412 39 1 -2.2822 -12.1698 -1.1395 40 1 -0.0972 -12.1867 0.1496 41 1 -0.7344 -10.8498 1.2487 42 1 -1.3326 -4.2474 -0.2754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746391212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = 82.035847 kcal Electronic energy + Delta-G solvation = -28043.243493 eV Core-core repulsion = 23991.774057 eV Total energy + Delta-G solvation = -4051.469436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.86108 -39.95639 -39.14293 -37.96087 -37.10723 -34.53289 -33.32122 -32.84489 -31.00418 -30.71701 -30.33820 -28.09147 -25.70682 -24.51414 -23.36040 -23.12897 -22.35841 -21.20904 -20.66208 -19.82758 -19.48704 -18.21273 -17.63310 -17.42719 -16.42970 -15.75905 -15.54917 -15.49178 -15.24502 -15.10141 -14.74505 -14.61723 -14.12500 -13.84997 -13.63770 -13.48546 -13.11602 -13.05777 -12.98748 -12.97709 -11.92401 -11.75837 -11.65396 -11.57366 -11.39113 -11.32573 -11.23736 -11.08583 -10.94474 -10.83450 -10.55803 -10.30815 -9.40106 -9.24644 -9.14883 -9.05620 -8.89359 -8.66627 -8.14501 -6.79882 -6.62322 -4.29309 1.14334 1.26614 1.62739 2.44610 2.92058 3.02929 3.08198 3.24850 3.35595 3.68832 3.70139 3.84765 3.88752 4.15069 4.34865 4.49569 4.55359 4.58424 4.79114 4.83113 4.95530 4.96059 5.00672 5.12117 5.26607 5.37126 5.42353 5.58535 5.72772 5.80280 5.87223 6.13459 6.18486 6.30676 6.34287 6.37543 6.47680 6.73690 6.82882 6.87646 6.89230 7.14674 7.18721 7.75012 7.84934 8.08271 8.16559 8.46231 8.67471 9.29732 9.58111 10.33709 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022608 B = 0.002217 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.207995 B =12628.661377 C =13262.956617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.138 5.138 10 C -0.077 4.077 11 C -0.070 4.070 12 N -0.582 5.582 13 C 0.484 3.516 14 O -0.523 6.523 15 C 0.517 3.483 16 O -0.509 6.509 17 N -0.677 5.677 18 C 0.137 3.863 19 C -0.040 4.040 20 C -0.102 4.102 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.158 4.158 26 C -0.170 4.170 27 C -0.026 4.026 28 N -0.261 5.261 29 H 0.276 0.724 30 H 0.149 0.851 31 H 0.409 0.591 32 H 0.416 0.584 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.492 -22.177 -4.227 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.454 4.454 8 H 0.136 0.864 9 N 0.095 4.905 10 C -0.228 4.228 11 C -0.175 4.175 12 N -0.224 5.224 13 C 0.264 3.736 14 O -0.401 6.401 15 C 0.298 3.702 16 O -0.383 6.383 17 N -0.331 5.331 18 C 0.050 3.950 19 C -0.041 4.041 20 C -0.120 4.120 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.132 4.132 25 C -0.195 4.195 26 C -0.208 4.208 27 C -0.202 4.202 28 N -0.092 5.092 29 H 0.086 0.914 30 H 0.167 0.833 31 H 0.244 0.756 32 H 0.254 0.746 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.153 -20.801 -4.123 21.237 hybrid contribution 0.885 -0.088 -0.039 0.890 sum -0.268 -20.890 -4.162 21.302 Atomic orbital electron populations 1.70215 1.06199 1.28141 1.34777 1.25673 0.95721 1.00373 0.95349 0.85787 0.79480 0.79851 0.78917 1.19570 1.20041 1.18700 1.19936 0.92133 0.80571 1.52798 0.86411 1.44567 1.04057 1.03672 1.38192 1.21311 0.96978 0.85539 1.18984 1.17250 0.94632 0.80927 1.24735 1.42140 1.08613 1.05094 1.66601 1.19623 0.85364 0.86704 0.81881 1.90658 1.25208 1.74273 1.49938 1.20330 0.84753 0.87992 0.77102 1.90757 1.25180 1.75405 1.46928 1.45015 1.10022 1.05891 1.72131 1.19042 1.03013 0.79246 0.93719 1.18916 0.97843 0.94612 0.92774 1.20919 0.98976 0.99145 0.92948 1.21138 0.97496 0.96787 0.97847 1.21150 0.99816 0.94262 0.98875 1.21059 0.99419 0.99638 0.93490 1.20896 0.97954 0.96193 0.98117 1.23447 0.92550 1.00702 1.02841 1.23533 0.99303 1.01576 0.96395 1.24143 0.97902 0.90894 1.07261 1.78258 0.90230 1.14980 1.25691 0.91353 0.83339 0.75583 0.74601 0.86397 0.85954 0.86134 0.86010 0.85903 0.87489 0.87273 0.87538 0.87775 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.12 11.83 55.50 0.66 -20.46 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.68 29.55 -169.99 -5.02 13.65 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.32 -8.42 10.24 -14.82 -0.15 -8.57 16 8 H 0.12 2.75 7.84 -52.48 -0.41 2.34 16 9 N -0.14 -3.75 3.73 -11.40 -0.04 -3.80 16 10 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 11 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 12 N -0.58 -11.02 5.45 -10.45 -0.06 -11.08 16 13 C 0.48 8.74 7.85 -11.66 -0.09 8.65 16 14 O -0.52 -10.48 13.63 5.45 0.07 -10.41 16 15 C 0.52 7.90 6.86 -11.65 -0.08 7.82 16 16 O -0.51 -8.55 15.69 5.48 0.09 -8.47 16 17 N -0.68 -8.24 4.86 -49.16 -0.24 -8.48 16 18 C 0.14 1.44 2.31 -132.97 -0.31 1.14 16 19 C -0.04 -0.46 4.72 -104.63 -0.49 -0.95 16 20 C -0.10 -1.25 8.81 -39.58 -0.35 -1.60 16 21 C -0.11 -1.25 10.05 -39.58 -0.40 -1.65 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.12 -1.09 10.05 -39.59 -0.40 -1.48 16 24 C -0.11 -1.12 9.28 -39.58 -0.37 -1.49 16 25 C -0.16 -1.15 10.08 -26.69 -0.27 -1.42 16 26 C -0.17 -1.46 9.79 -26.70 -0.26 -1.72 16 27 C -0.03 -0.68 10.85 -17.02 -0.18 -0.86 16 28 N -0.26 -7.47 10.41 30.81 0.32 -7.15 16 29 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.15 2.94 8.06 -52.49 -0.42 2.51 16 31 H 0.41 6.75 8.29 -40.82 -0.34 6.42 16 32 H 0.42 4.58 8.30 -40.82 -0.34 4.25 16 33 H 0.12 1.52 7.31 -52.48 -0.38 1.13 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.95 6.05 -52.49 -0.32 0.63 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 0.79 6.20 -51.93 -0.32 0.47 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.18 4.42 5.92 -52.49 -0.31 4.11 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -33.24 366.14 -7.83 -41.07 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -4.52 Total: 16.42 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -4.61 Total: -6.82 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.64 Total: -50.96 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.16 Total: -18.88 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.24 -7.83 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746391212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.110 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds