Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31284 * 1 3 3 Si 1.86804 * 120.00104 * 2 1 4 4 H 1.48496 * 109.47257 * 274.99994 * 3 2 1 5 5 H 1.48502 * 109.46670 * 35.00406 * 3 2 1 6 6 H 1.48502 * 109.46646 * 154.99807 * 3 2 1 7 7 C 1.39005 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99802 * 185.10010 * 7 2 1 9 9 N 1.37296 * 120.00133 * 5.09926 * 7 2 1 10 10 C 1.36443 * 126.05364 * 174.90614 * 9 7 2 11 11 C 1.35788 * 107.49604 * 180.02562 * 10 9 7 12 12 N 1.40297 * 126.10126 * 180.02562 * 11 10 9 13 13 C 1.34770 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21408 * 120.00222 * 359.97438 * 13 12 11 15 15 C 1.49307 * 119.99877 * 179.97438 * 13 12 11 16 16 O 1.21366 * 120.00020 * 359.97438 * 15 13 12 17 17 N 1.34781 * 120.00221 * 179.97438 * 15 13 12 18 18 C 1.46496 * 120.00085 * 174.42198 * 17 15 13 19 19 C 1.50695 * 115.55284 * 303.33426 * 18 17 15 20 20 C 1.38232 * 120.00194 * 335.03690 * 19 18 17 21 21 C 1.38234 * 120.00104 * 179.73938 * 20 19 18 22 22 C 1.38237 * 119.99826 * 0.53195 * 21 20 19 23 23 C 1.38235 * 119.99986 * 359.74157 * 22 21 20 24 24 C 1.38230 * 119.99913 * 359.97438 * 23 22 21 25 25 C 1.53005 * 117.49591 * 157.66706 * 18 17 15 26 26 C 1.53000 * 117.49552 * 89.01298 * 18 17 15 27 27 C 1.40722 * 107.79985 * 0.02562 * 11 10 9 28 28 N 1.30874 * 108.37832 * 0.02562 * 27 11 10 29 29 H 0.97004 * 119.99410 * 359.97438 * 1 2 3 30 30 H 1.07999 * 126.25141 * 359.77637 * 10 9 7 31 31 H 0.97003 * 119.99222 * 359.97438 * 12 11 10 32 32 H 0.97001 * 119.99576 * 354.42719 * 17 15 13 33 33 H 1.08004 * 120.00055 * 359.97438 * 20 19 18 34 34 H 1.08001 * 120.00406 * 180.29524 * 21 20 19 35 35 H 1.08005 * 119.99747 * 179.77071 * 22 21 20 36 36 H 1.07994 * 120.00022 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.00032 * 179.97438 * 24 23 22 38 38 H 1.09003 * 117.49872 * 0.02562 * 25 18 17 39 39 H 1.08996 * 117.49768 * 145.02193 * 25 18 17 40 40 H 1.09004 * 117.49276 * 214.97517 * 26 18 17 41 41 H 1.09003 * 117.50034 * 359.96768 * 26 18 17 42 42 H 1.08000 * 125.81059 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3887 2.1075 -1.3947 5 1 1.5011 2.6198 0.8032 6 1 3.5933 1.4118 0.5918 7 6 2.0078 -1.2038 -0.0005 8 1 3.0847 -1.2057 0.0826 9 7 1.3254 -2.3905 -0.1067 10 6 1.8834 -3.6306 -0.2178 11 6 0.8686 -4.5291 -0.2988 12 7 1.0040 -5.9200 -0.4231 13 6 -0.0927 -6.7001 -0.4940 14 8 -1.1978 -6.1993 -0.4500 15 6 0.0514 -8.1803 -0.6268 16 8 1.1561 -8.6809 -0.6713 17 7 -1.0453 -8.9606 -0.6973 18 6 -0.9074 -10.3970 -0.9500 19 6 -0.1673 -10.7672 -2.2094 20 6 -0.1215 -9.8818 -3.2699 21 6 0.5620 -10.2193 -4.4231 22 6 1.1903 -11.4468 -4.5200 23 6 1.1397 -12.3346 -3.4616 24 6 0.4612 -11.9947 -2.3062 25 6 -2.0597 -11.3046 -0.5150 26 6 -0.7414 -11.3148 0.2628 27 6 -0.3431 -3.8164 -0.2359 28 7 -0.0669 -2.5422 -0.1223 29 1 -0.4849 0.8401 0.0004 30 1 2.9394 -3.8559 -0.2415 31 1 1.8869 -6.3200 -0.4586 32 1 -1.9260 -8.5710 -0.5807 33 1 -0.6164 -8.9247 -3.1960 34 1 0.6018 -9.5255 -5.2499 35 1 1.7211 -11.7119 -5.4224 36 1 1.6309 -13.2934 -3.5371 37 1 0.4213 -12.6884 -1.4795 38 1 -2.9207 -10.8329 -0.0412 39 1 -2.2822 -12.1698 -1.1395 40 1 -0.0972 -12.1867 0.1496 41 1 -0.7344 -10.8498 1.2487 42 1 -1.3326 -4.2474 -0.2754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746391212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = 59.982442 kcal Electronic energy + Delta-G solvation = -28044.199800 eV Core-core repulsion = 23991.774057 eV Total energy + Delta-G solvation = -4052.425743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.14255 -41.46721 -40.43946 -39.24410 -38.01724 -36.18551 -35.08936 -33.98809 -32.31620 -31.77178 -31.44964 -29.92444 -27.36477 -26.00304 -24.31603 -23.82551 -23.08075 -22.96490 -22.09428 -21.29030 -20.77127 -19.69285 -19.17202 -18.45983 -17.48136 -17.46634 -16.99472 -16.76482 -16.73703 -16.05705 -15.74472 -15.58177 -15.47211 -15.34445 -15.08359 -14.87613 -14.68524 -14.24457 -13.81365 -13.81027 -13.53460 -13.40753 -13.01913 -12.88757 -12.55684 -12.53476 -12.27924 -12.14367 -12.07633 -11.99613 -11.86358 -11.63336 -11.09421 -10.89363 -10.63242 -10.31768 -10.16091 -9.83056 -9.43951 -8.65079 -8.50899 -6.28404 0.24808 0.38962 0.49047 1.20807 1.27950 1.40823 1.58400 1.70757 2.00917 2.10136 2.49220 2.50861 2.60971 2.87451 3.05377 3.11035 3.36464 3.51944 3.75836 3.92181 4.06510 4.11106 4.26307 4.37158 4.40734 4.49951 4.61152 4.67959 4.73360 4.93352 4.95865 4.96474 5.04612 5.11163 5.17362 5.18522 5.22259 5.28133 5.55700 5.61797 5.65846 5.88315 5.97691 6.09759 6.22461 6.44842 6.65159 6.79132 7.03343 7.39308 7.60486 8.48615 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022608 B = 0.002217 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.207995 B =12628.661377 C =13262.956617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.005 4.005 3 Si 1.020 2.980 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.243 1.243 7 C -0.353 4.353 8 H 0.142 0.858 9 N -0.162 5.162 10 C -0.075 4.075 11 C -0.057 4.057 12 N -0.582 5.582 13 C 0.486 3.514 14 O -0.543 6.543 15 C 0.528 3.472 16 O -0.524 6.524 17 N -0.661 5.661 18 C 0.104 3.896 19 C -0.052 4.052 20 C -0.130 4.130 21 C -0.130 4.130 22 C -0.129 4.129 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.166 4.166 27 C -0.048 4.048 28 N -0.308 5.308 29 H 0.278 0.722 30 H 0.188 0.812 31 H 0.422 0.578 32 H 0.421 0.579 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -24.480 -4.228 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.166 1.166 7 C -0.484 4.484 8 H 0.159 0.841 9 N 0.070 4.930 10 C -0.226 4.226 11 C -0.163 4.163 12 N -0.226 5.226 13 C 0.268 3.732 14 O -0.421 6.421 15 C 0.308 3.692 16 O -0.399 6.399 17 N -0.313 5.313 18 C 0.017 3.983 19 C -0.053 4.053 20 C -0.148 4.148 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.169 4.169 26 C -0.204 4.204 27 C -0.223 4.223 28 N -0.139 5.139 29 H 0.088 0.912 30 H 0.205 0.795 31 H 0.260 0.740 32 H 0.259 0.741 33 H 0.117 0.883 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.118 0.882 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.367 -23.171 -4.126 23.538 hybrid contribution 0.347 0.393 -0.072 0.529 sum 0.714 -22.778 -4.198 23.173 Atomic orbital electron populations 1.70381 1.08418 1.29304 1.36691 1.26896 0.96493 1.04324 0.93989 0.84566 0.78533 0.74075 0.78979 1.19129 1.20005 1.16612 1.20666 0.93385 0.80889 1.53489 0.84101 1.44846 1.03700 1.05032 1.39458 1.21997 0.98806 0.84526 1.17250 1.17290 0.93493 0.82772 1.22740 1.42080 1.09766 1.03519 1.67252 1.20270 0.84681 0.88174 0.80105 1.90646 1.26076 1.75168 1.50208 1.19670 0.85411 0.86483 0.77658 1.90750 1.25768 1.75092 1.48295 1.44966 1.09221 1.06891 1.70265 1.19385 1.06196 0.78033 0.94647 1.19092 0.98304 0.95198 0.92689 1.20938 1.00483 0.99074 0.94326 1.21336 0.97857 0.97844 0.97768 1.21464 0.99496 0.93681 1.00059 1.21463 0.98635 1.00566 0.92870 1.21207 0.97441 0.95949 0.99157 1.23599 0.92014 0.99745 1.01508 1.23630 1.00445 1.01091 0.95246 1.24243 0.98879 0.90912 1.08295 1.78154 0.91968 1.16428 1.27382 0.91197 0.79550 0.74013 0.74074 0.88277 0.85471 0.83936 0.83170 0.83646 0.86270 0.85453 0.86051 0.88196 0.80753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.77 11.83 21.66 0.26 -46.52 16 2 C 0.00 -0.25 5.50 84.96 0.47 0.22 16 3 Si 1.02 38.20 29.55 68.60 2.03 40.23 16 4 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.24 -8.23 7.11 99.48 0.71 -7.53 16 7 C -0.35 -18.59 10.24 84.02 0.86 -17.73 16 8 H 0.14 6.44 7.84 -2.91 -0.02 6.42 16 9 N -0.16 -8.99 3.73 -189.97 -0.71 -9.70 16 10 C -0.07 -3.52 11.50 83.41 0.96 -2.56 16 11 C -0.06 -2.64 6.90 37.82 0.26 -2.38 16 12 N -0.58 -21.96 5.45 -305.33 -1.66 -23.63 16 13 C 0.49 17.68 7.85 87.23 0.69 18.37 16 14 O -0.54 -22.23 13.63 -3.43 -0.05 -22.28 16 15 C 0.53 15.96 6.86 87.22 0.60 16.56 16 16 O -0.52 -17.24 15.69 -3.30 -0.05 -17.30 16 17 N -0.66 -15.69 4.86 -427.79 -2.08 -17.77 16 18 C 0.10 2.02 2.31 2.86 0.01 2.02 16 19 C -0.05 -1.12 4.72 -19.87 -0.09 -1.21 16 20 C -0.13 -3.20 8.81 22.27 0.20 -3.00 16 21 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 22 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 23 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 24 C -0.12 -2.06 9.28 22.27 0.21 -1.85 16 25 C -0.13 -1.54 10.08 30.62 0.31 -1.23 16 26 C -0.17 -2.43 9.79 30.62 0.30 -2.13 16 27 C -0.05 -2.57 10.85 85.44 0.93 -1.64 16 28 N -0.31 -18.35 10.41 -56.43 -0.59 -18.93 16 29 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.19 7.03 8.06 -2.91 -0.02 7.01 16 31 H 0.42 13.62 8.29 -92.71 -0.77 12.86 16 32 H 0.42 9.09 8.30 -92.71 -0.77 8.32 16 33 H 0.10 2.69 7.31 -2.91 -0.02 2.66 16 34 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 37 H 0.15 1.73 6.05 -2.91 -0.02 1.71 16 38 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.12 1.39 6.20 -2.39 -0.01 1.37 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.18 9.18 5.92 -2.91 -0.02 9.17 16 Total: -1.00 -75.19 366.14 3.06 -72.13 By element: Atomic # 1 Polarization: 46.99 SS G_CDS: -0.43 Total: 46.56 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 6.35 Total: -2.79 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -4.78 Total: -116.55 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.10 Total: -39.57 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -75.19 3.06 -72.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746391212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.111 kcal (2) G-P(sol) polarization free energy of solvation -75.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds