Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47061 * 2 1 4 4 O 1.42898 * 109.47163 * 240.00009 * 2 1 3 5 5 C 1.53000 * 109.47209 * 119.99984 * 2 1 3 6 6 C 1.52999 * 109.47242 * 184.99816 * 5 2 1 7 7 N 1.46497 * 109.47335 * 179.97438 * 6 5 2 8 8 C 1.34776 * 119.99918 * 180.02562 * 7 6 5 9 9 O 1.21363 * 120.00181 * 359.97438 * 8 7 6 10 10 C 1.49317 * 119.99918 * 180.02562 * 8 7 6 11 11 O 1.21390 * 119.99575 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99860 * 179.97438 * 10 8 7 13 13 C 1.39810 * 119.99828 * 185.60886 * 12 10 8 14 14 C 1.38796 * 120.08078 * 34.09969 * 13 12 10 15 15 C 1.38149 * 120.00931 * 179.97438 * 14 13 12 16 16 C 1.38579 * 120.19046 * 0.02562 * 15 14 13 17 17 F 1.35099 * 119.91699 * 180.02562 * 16 15 14 18 18 C 1.38337 * 120.16951 * 359.97438 * 16 15 14 19 19 C 1.38740 * 119.98739 * 359.97438 * 18 16 15 20 20 O 1.35742 * 120.09933 * 180.29612 * 19 18 16 21 21 C 1.34799 * 116.99886 * 354.20690 * 20 19 18 22 22 H 1.08000 * 119.99707 * 354.52894 * 21 20 19 23 23 C 1.38658 * 119.99911 * 174.52420 * 21 20 19 24 24 N 1.31560 * 119.99729 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 120.00143 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46886 * 90.00012 * 25 23 21 27 27 H 1.48498 * 109.47053 * 209.99695 * 25 23 21 28 28 H 1.48500 * 109.46963 * 329.99908 * 25 23 21 29 29 H 1.09009 * 109.47058 * 299.99816 * 1 2 3 30 30 H 1.08995 * 109.47418 * 60.00072 * 1 2 3 31 31 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 32 32 H 0.96701 * 113.99747 * 300.00456 * 4 2 1 33 33 H 1.08997 * 109.47254 * 65.00031 * 5 2 1 34 34 H 1.08997 * 109.47032 * 304.99790 * 5 2 1 35 35 H 1.09011 * 109.46605 * 59.99848 * 6 5 2 36 36 H 1.09001 * 109.47100 * 300.00450 * 6 5 2 37 37 H 0.96994 * 120.00108 * 0.02562 * 7 6 5 38 38 H 0.96997 * 119.99719 * 5.60781 * 12 10 8 39 39 H 1.07999 * 119.99967 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.89974 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.00937 * 180.02562 * 18 16 15 42 42 H 0.97008 * 119.99618 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5648 -0.6133 1.3137 7 7 4.0531 -1.3034 2.5101 8 6 5.3740 -1.3386 2.7758 9 8 6.1589 -0.7991 2.0236 10 6 5.8717 -2.0425 3.9950 11 8 5.0866 -2.5825 4.7470 12 7 7.1926 -2.0781 4.2604 13 6 7.6695 -2.8345 5.3352 14 6 7.0441 -4.0246 5.6801 15 6 7.5168 -4.7710 6.7421 16 6 8.6150 -4.3350 7.4663 17 9 9.0730 -5.0696 8.5035 18 6 9.2441 -3.1500 7.1292 19 6 8.7760 -2.3952 6.0633 20 8 9.3953 -1.2351 5.7268 21 6 10.3834 -0.8107 6.5396 22 1 10.5907 -1.3387 7.4587 23 6 11.1335 0.3036 6.1958 24 7 12.0981 0.7175 6.9889 25 14 10.7743 1.2172 4.6064 26 1 9.7699 2.2804 4.8628 27 1 12.0258 1.8315 4.0950 28 1 10.2419 0.2658 3.5981 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.7209 -1.5952 -1.2329 33 1 1.7517 -1.7715 1.2056 34 1 1.6054 -0.2617 2.1369 35 1 3.8531 0.4371 1.3573 36 1 3.9994 -1.0728 0.4259 37 1 3.4259 -1.7349 3.1111 38 1 7.8124 -1.5791 3.7057 39 1 6.1878 -4.3672 5.1182 40 1 7.0291 -5.6970 7.0087 41 1 10.1000 -2.8128 7.6951 42 1 12.6226 1.4973 6.7484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760322913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = -168.132500 kcal Electronic energy + Delta-G solvation = -28693.322044 eV Core-core repulsion = 24167.942519 eV Total energy + Delta-G solvation = -4525.379525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.37907 -40.88678 -39.60529 -38.62688 -38.15381 -36.60403 -35.54283 -34.27767 -32.56735 -32.33678 -29.80971 -29.58622 -28.81465 -25.67133 -25.29192 -23.40805 -22.19839 -22.02766 -21.53731 -20.21978 -18.87092 -18.29607 -17.86324 -17.15534 -16.83703 -16.58953 -16.16591 -16.06719 -15.65968 -15.51645 -15.29727 -15.06220 -14.51859 -14.34782 -14.17100 -14.10838 -13.94622 -13.62037 -13.46902 -13.36135 -13.16830 -12.54454 -12.48423 -12.39117 -12.11616 -11.94504 -11.75815 -11.64281 -11.53654 -11.29167 -10.97873 -10.85775 -10.59766 -10.45170 -9.95933 -9.78779 -9.49160 -9.44297 -9.04185 -8.10166 -7.39422 -6.59110 -4.26745 1.19856 1.82800 1.91221 2.31836 3.14028 3.17605 3.22551 3.29738 3.59182 3.88161 4.08968 4.11501 4.22745 4.35372 4.43907 4.50588 4.58602 4.82712 4.83993 4.86746 4.90067 5.10032 5.24565 5.35264 5.36455 5.56486 5.58609 5.62245 5.68825 5.79060 5.90713 6.00656 6.22282 6.56016 6.69280 6.70733 6.74298 6.96281 7.17149 7.33662 7.41254 7.56961 7.74200 7.80907 8.05901 8.73210 9.26299 10.47135 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.002831 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.414385 B = 9888.067954 C =12120.865779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.103 0.897 4 O -0.561 6.561 5 C -0.166 4.166 6 C 0.119 3.881 7 N -0.705 5.705 8 C 0.510 3.490 9 O -0.512 6.512 10 C 0.501 3.499 11 O -0.515 6.515 12 N -0.618 5.618 13 C 0.048 3.952 14 C -0.044 4.044 15 C -0.224 4.224 16 C 0.138 3.862 17 F -0.147 7.147 18 C -0.246 4.246 19 C 0.171 3.829 20 O -0.202 6.202 21 C -0.393 4.393 22 H 0.110 0.890 23 C 0.069 3.931 24 N -0.867 5.867 25 Si 0.903 3.097 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.257 1.257 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.375 0.625 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.412 0.588 38 H 0.423 0.577 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.152 0.848 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.048 -4.472 -11.220 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.121 0.879 4 O -0.367 6.367 5 C -0.204 4.204 6 C -0.004 4.004 7 N -0.359 5.359 8 C 0.291 3.709 9 O -0.387 6.387 10 C 0.282 3.718 11 O -0.392 6.392 12 N -0.263 5.263 13 C -0.046 4.046 14 C -0.064 4.064 15 C -0.244 4.244 16 C 0.118 3.882 17 F -0.125 7.125 18 C -0.266 4.266 19 C 0.116 3.884 20 O -0.106 6.106 21 C -0.467 4.467 22 H 0.128 0.872 23 C -0.137 4.137 24 N -0.503 5.503 25 Si 0.728 3.272 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.180 1.180 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.223 0.777 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.248 0.752 38 H 0.261 0.739 39 H 0.155 0.845 40 H 0.145 0.855 41 H 0.169 0.831 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.573 -3.531 -11.503 22.976 hybrid contribution -0.129 -0.087 0.030 0.159 sum -19.702 -3.618 -11.473 23.085 Atomic orbital electron populations 1.22499 0.95978 1.02747 1.03077 1.21840 0.93026 0.96931 0.83652 0.87916 1.86635 1.77106 1.29191 1.43760 1.22573 0.95167 1.02467 1.00194 1.21429 0.93445 0.98051 0.87432 1.45720 1.07022 1.56091 1.27071 1.20069 0.83354 0.81243 0.86278 1.90809 1.55190 1.43940 1.48761 1.20014 0.83268 0.82106 0.86377 1.90748 1.54955 1.45310 1.48164 1.42807 1.07101 1.46869 1.29533 1.16805 0.98483 0.94613 0.94651 1.20445 0.98655 0.90888 0.96441 1.20488 1.00057 1.03370 1.00481 1.17476 0.94388 0.90358 0.86003 1.91438 1.88466 1.76392 1.56223 1.20996 1.05908 0.96420 1.03298 1.18507 0.91852 0.86180 0.91885 1.83540 1.46030 1.31700 1.49338 1.20781 1.10164 1.13059 1.02742 0.87225 1.24493 0.94002 0.96175 0.98994 1.69640 1.18596 1.24920 1.37108 0.86219 0.78255 0.80306 0.82428 1.19612 1.20451 1.18041 0.91347 0.91542 0.92171 0.77736 0.90556 0.89901 0.90861 0.90156 0.75171 0.73871 0.84539 0.85495 0.83101 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.75 9.53 37.16 0.35 -0.40 16 2 C 0.11 0.57 3.59 -26.73 -0.10 0.47 16 3 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 4 O -0.56 -3.83 12.87 -35.23 -0.45 -4.28 16 5 C -0.17 -0.86 5.01 -26.73 -0.13 -1.00 16 6 C 0.12 1.02 5.57 -4.04 -0.02 1.00 16 7 N -0.70 -7.29 5.55 -60.77 -0.34 -7.63 16 8 C 0.51 7.29 7.88 -11.65 -0.09 7.20 16 9 O -0.51 -8.67 16.48 5.49 0.09 -8.58 16 10 C 0.50 8.01 7.61 -11.65 -0.09 7.92 16 11 O -0.52 -8.56 14.23 5.46 0.08 -8.48 16 12 N -0.62 -10.96 5.18 -10.16 -0.05 -11.01 16 13 C 0.05 0.93 6.28 -83.52 -0.52 0.41 16 14 C -0.04 -0.76 8.65 -39.41 -0.34 -1.10 16 15 C -0.22 -3.78 10.02 -39.49 -0.40 -4.18 16 16 C 0.14 2.59 7.29 -39.42 -0.29 2.31 16 17 F -0.15 -2.69 17.26 2.25 0.04 -2.65 16 18 C -0.25 -5.17 9.11 -39.36 -0.36 -5.53 16 19 C 0.17 3.73 6.67 -38.91 -0.26 3.47 16 20 O -0.20 -4.93 8.13 0.16 0.00 -4.93 16 21 C -0.39 -10.46 9.90 30.89 0.31 -10.15 16 22 H 0.11 3.00 5.53 -52.49 -0.29 2.71 16 23 C 0.07 1.84 5.49 -17.51 -0.10 1.74 16 24 N -0.87 -24.03 13.96 55.48 0.77 -23.26 16 25 Si 0.90 20.77 28.62 -169.99 -4.86 15.90 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 29 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.38 1.25 9.05 45.56 0.41 1.67 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.08 0.77 7.82 -51.93 -0.41 0.37 16 37 H 0.41 3.58 7.94 -40.82 -0.32 3.26 16 38 H 0.42 7.58 8.03 -40.82 -0.33 7.25 16 39 H 0.14 2.15 6.48 -52.49 -0.34 1.81 16 40 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.15 3.33 5.71 -52.48 -0.30 3.03 16 42 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -30.79 370.12 -5.28 -36.06 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -4.09 Total: 11.12 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.03 Total: 2.16 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.38 Total: -41.90 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.28 Total: -26.27 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.86 Total: 15.90 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.79 -5.28 -36.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760322913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.071 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds